RNA–Protein interactions for RNA: ENST00000345617.7

HDAC4-201, Transcript of histone deacetylase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDAC4, Length 8,976 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-201ENST00000345617 MBD3O95983 291 aa23.46■■□□□ 1.35
HDAC4-201ENST00000345617 AMOTL1Q8IY63 956 aa23.45■■□□□ 1.35
HDAC4-201ENST00000345617 RRP9O43818 475 aaKnown RBP23.45■■□□□ 1.34
HDAC4-201ENST00000345617 PCMTD1Q96MG8 357 aaPredicted RBP23.45■■□□□ 1.34
HDAC4-201ENST00000345617 PKD2Q13563 968 aa23.45■■□□□ 1.34
HDAC4-201ENST00000345617 TXLNBQ8N3L3 684 aa23.45■■□□□ 1.34
HDAC4-201ENST00000345617 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.45■■□□□ 1.34
HDAC4-201ENST00000345617 CCDC73Q6ZRK6 1079 aa23.44■■□□□ 1.34
HDAC4-201ENST00000345617 PDE4CQ08493 712 aa23.44■■□□□ 1.34
HDAC4-201ENST00000345617 NUP155O75694 1391 aa23.44■■□□□ 1.34
HDAC4-201ENST00000345617 CARMIL1Q5VZK9 1371 aa23.43■■□□□ 1.34
HDAC4-201ENST00000345617 CUX1P39880 1505 aa23.43■■□□□ 1.34
HDAC4-201ENST00000345617 VPS53Q5VIR6 699 aa23.43■■□□□ 1.34
HDAC4-201ENST00000345617 BICD2Q8TD16 824 aa23.43■■□□□ 1.34
HDAC4-201ENST00000345617 CUX2O14529 1486 aa23.43■■□□□ 1.34
HDAC4-201ENST00000345617 INTS3Q68E01 1043 aaKnown RBP23.43■■□□□ 1.34
HDAC4-201ENST00000345617 TSPYL1Q9H0U9 437 aa23.42■■□□□ 1.34
HDAC4-201ENST00000345617 OLFM4Q6UX06 510 aa23.41■■□□□ 1.34
HDAC4-201ENST00000345617 CPLX1O14810 134 aa23.41■■□□□ 1.34
HDAC4-201ENST00000345617 ANKRD45Q5TZF3 282 aa23.41■■□□□ 1.34
HDAC4-201ENST00000345617 PRDM2Q13029 1718 aa23.4■■□□□ 1.34
HDAC4-201ENST00000345617 GOLGA6L10A6NI86 522 aa23.4■■□□□ 1.34
HDAC4-201ENST00000345617 MPHOSPH9Q99550 1183 aa23.4■■□□□ 1.34
HDAC4-201ENST00000345617 SLC4A10Q6U841 1118 aa23.39■■□□□ 1.34
HDAC4-201ENST00000345617 ZSCAN21Q9Y5A6 473 aaPredicted RBP23.39■■□□□ 1.34
HDAC4-201ENST00000345617 NINLQ9Y2I6 1382 aa23.38■■□□□ 1.33
HDAC4-201ENST00000345617 CCDC144AA2RUR9 1427 aa23.38■■□□□ 1.33
HDAC4-201ENST00000345617 KIAA0754O94854 1291 aa23.38■■□□□ 1.33
HDAC4-201ENST00000345617 RILPL2Q969X0 211 aa23.38■■□□□ 1.33
HDAC4-201ENST00000345617 FOXD4L5Q5VV16 416 aaPredicted RBP23.38■■□□□ 1.33
HDAC4-201ENST00000345617 FOXD4L4Q8WXT5 416 aaPredicted RBP23.38■■□□□ 1.33
HDAC4-201ENST00000345617 PDCP20941 246 aa23.37■■□□□ 1.33
HDAC4-201ENST00000345617 IQCEQ6IPM2 695 aa23.37■■□□□ 1.33
HDAC4-201ENST00000345617 MCM2P49736 904 aa23.36■■□□□ 1.33
HDAC4-201ENST00000345617 SAFBQ15424 915 aaKnown RBP eCLIP23.36■■□□□ 1.33
HDAC4-201ENST00000345617 TOMM22Q9NS69 142 aa23.36■■□□□ 1.33
HDAC4-201ENST00000345617 ABCC8Q09428 1581 aa23.35■■□□□ 1.33
HDAC4-201ENST00000345617 EIF3JO75822 258 aaKnown RBP23.35■■□□□ 1.33
HDAC4-201ENST00000345617 ODF2Q5BJF6 829 aa23.35■■□□□ 1.33
HDAC4-201ENST00000345617 CT47A1Q5JQC4 288 aaPredicted RBP23.35■■□□□ 1.33
HDAC4-201ENST00000345617 RSPH4AQ5TD94 716 aa23.35■■□□□ 1.33
HDAC4-201ENST00000345617 TRDNQ13061 729 aa23.35■■□□□ 1.33
HDAC4-201ENST00000345617 SMARCE1Q969G3 411 aa23.35■■□□□ 1.33
HDAC4-201ENST00000345617 EPS15P42566 896 aa23.34■■□□□ 1.33
HDAC4-201ENST00000345617 PIP4K2AP48426 406 aaPredicted RBP23.34■■□□□ 1.33
HDAC4-201ENST00000345617 ERLIN2O94905 339 aa23.34■■□□□ 1.33
HDAC4-201ENST00000345617 LUC7LQ9NQ29 371 aaKnown RBP23.34■■□□□ 1.33
HDAC4-201ENST00000345617 SMC3Q9UQE7 1217 aa23.34■■□□□ 1.33
HDAC4-201ENST00000345617 PDIA4P13667 645 aaKnown RBP23.33■■□□□ 1.33
HDAC4-201ENST00000345617 CLUAP1Q96AJ1 413 aa23.33■■□□□ 1.33
HDAC4-201ENST00000345617 NAP1L1P55209 391 aaKnown RBP23.32■■□□□ 1.32
HDAC4-201ENST00000345617 BRMS1Q9HCU9 246 aa23.32■■□□□ 1.32
HDAC4-201ENST00000345617 DEF6Q9H4E7 631 aa23.31■■□□□ 1.32
HDAC4-201ENST00000345617 ERC2O15083 957 aa23.31■■□□□ 1.32
HDAC4-201ENST00000345617 ANKRD18AQ8IVF6 992 aa23.31■■□□□ 1.32
HDAC4-201ENST00000345617 SOX12O15370 315 aa23.3■■□□□ 1.32
HDAC4-201ENST00000345617 RABEP1Q15276 862 aa23.3■■□□□ 1.32
HDAC4-201ENST00000345617 NOL10Q9BSC4 688 aaKnown RBP23.3■■□□□ 1.32
HDAC4-201ENST00000345617 ERLIN1O75477 346 aa23.3■■□□□ 1.32
HDAC4-201ENST00000345617 ANO2Q9NQ90 1003 aa23.3■■□□□ 1.32
HDAC4-201ENST00000345617 USP47Q96K76 1375 aa23.29■■□□□ 1.32
HDAC4-201ENST00000345617 NFKBIBQ15653 356 aa23.29■■□□□ 1.32
HDAC4-201ENST00000345617 PDCL2Q8N4E4 241 aa23.29■■□□□ 1.32
HDAC4-201ENST00000345617 PSMA5P28066 241 aa23.28■■□□□ 1.32
HDAC4-201ENST00000345617 HSP90AB4PQ58FF6 505 aa23.28■■□□□ 1.32
HDAC4-201ENST00000345617 C22orf23Q9BZE7 217 aa23.28■■□□□ 1.32
HDAC4-201ENST00000345617 FRAT2O75474 233 aaPredicted RBP23.28■■□□□ 1.32
HDAC4-201ENST00000345617 ERICH2A1L162 156 aa23.28■■□□□ 1.32
HDAC4-201ENST00000345617 STK11IPQ8N1F8 1099 aa23.28■■□□□ 1.32
HDAC4-201ENST00000345617 G3V3G9 751 aa23.28■■□□□ 1.32
HDAC4-201ENST00000345617 DCAF8Q5TAQ9 597 aa23.28■■□□□ 1.32
HDAC4-201ENST00000345617 KINO60870 393 aaKnown RBP23.27■■□□□ 1.32
HDAC4-201ENST00000345617 XBP1P17861 261 aa23.27■■□□□ 1.32
HDAC4-201ENST00000345617 R3HCC1Q9Y3T6 440 aaKnown RBP23.26■■□□□ 1.31
HDAC4-201ENST00000345617 TSPY26PQ9H489 355 aa23.25■■□□□ 1.31
HDAC4-201ENST00000345617 PAK3O75914 559 aaPredicted RBP23.24■■□□□ 1.31
HDAC4-201ENST00000345617 TOP2AP11388 1531 aaKnown RBP23.24■■□□□ 1.31
HDAC4-201ENST00000345617 CSB-PGBD3P0DP91 1061 aa23.24■■□□□ 1.31
HDAC4-201ENST00000345617 SAFB2Q14151 953 aaKnown RBP eCLIP23.24■■□□□ 1.31
HDAC4-201ENST00000345617 ZNF330Q9Y3S2 320 aaPredicted RBP23.24■■□□□ 1.31
HDAC4-201ENST00000345617 CT47B1P0C2W7 299 aaPredicted RBP23.23■■□□□ 1.31
HDAC4-201ENST00000345617 CCDC146Q8IYE0 955 aa23.23■■□□□ 1.31
HDAC4-201ENST00000345617 API5Q9BZZ5 524 aaKnown RBP23.23■■□□□ 1.31
HDAC4-201ENST00000345617 DYDC1Q8WWB3 177 aa23.23■■□□□ 1.31
HDAC4-201ENST00000345617 CCDC43Q96MW1 224 aaKnown RBP23.23■■□□□ 1.31
HDAC4-201ENST00000345617 TRIM5Q9C035 493 aa23.23■■□□□ 1.31
HDAC4-201ENST00000345617 AXDND1Q5T1B0 1012 aaPredicted RBP23.23■■□□□ 1.31
HDAC4-201ENST00000345617 OFD1O75665 1012 aa23.22■■□□□ 1.31
HDAC4-201ENST00000345617 DZIP1LQ8IYY4 767 aaKnown RBP23.22■■□□□ 1.31
HDAC4-201ENST00000345617 HSP90AB2PQ58FF8 381 aa23.22■■□□□ 1.31
HDAC4-201ENST00000345617 IFIT2P09913 472 aaKnown RBP23.22■■□□□ 1.31
HDAC4-201ENST00000345617 C9orf78Q9NZ63 289 aaPredicted RBP23.22■■□□□ 1.31
HDAC4-201ENST00000345617 VPS37CA5D8V6 355 aaPredicted RBP23.21■■□□□ 1.31
HDAC4-201ENST00000345617 CRBNQ96SW2 442 aa23.21■■□□□ 1.31
HDAC4-201ENST00000345617 FAM107BQ9H098 131 aa23.21■■□□□ 1.31
HDAC4-201ENST00000345617 DHX16O60231 1041 aaKnown RBP23.2■■□□□ 1.3
HDAC4-201ENST00000345617 PRKRIP1Q9H875 184 aaPredicted RBP23.2■■□□□ 1.3
HDAC4-201ENST00000345617 SOGA1O94964 1423 aa23.2■■□□□ 1.3
HDAC4-201ENST00000345617 SCAPERQ9BY12 1400 aa23.2■■□□□ 1.3
HDAC4-201ENST00000345617 FOXD4L6Q3SYB3 417 aaPredicted RBP23.2■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms