RNA–Protein interactions for RNA: ENST00000345512.7

PTPRU-201, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRU, Length 4,470 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-201ENST00000345512 PTMAP06454 111 aaKnown RBP19.53■□□□□ 0.72
PTPRU-201ENST00000345512 PDE3AQ14432 1141 aa19.53■□□□□ 0.72
PTPRU-201ENST00000345512 TERF2IPQ9NYB0 399 aa19.53■□□□□ 0.72
PTPRU-201ENST00000345512 SLFN5Q08AF3 891 aa19.53■□□□□ 0.72
PTPRU-201ENST00000345512 MTHFSP49914 203 aa19.51■□□□□ 0.71
PTPRU-201ENST00000345512 GPATCH8Q9UKJ3 1502 aaKnown RBP19.5■□□□□ 0.71
PTPRU-201ENST00000345512 ELL2O00472 640 aaPredicted RBP19.5■□□□□ 0.71
PTPRU-201ENST00000345512 MAGI1Q96QZ7 1491 aaPredicted RBP19.49■□□□□ 0.71
PTPRU-201ENST00000345512 DUSP27Q5VZP5 1158 aa19.49■□□□□ 0.71
PTPRU-201ENST00000345512 EVC2Q86UK5 1308 aa19.48■□□□□ 0.71
PTPRU-201ENST00000345512 SOX12O15370 315 aa19.48■□□□□ 0.71
PTPRU-201ENST00000345512 DDX19BQ9UMR2 479 aa19.48■□□□□ 0.71
PTPRU-201ENST00000345512 TMEM132EQ6IEE7 984 aa19.48■□□□□ 0.71
PTPRU-201ENST00000345512 CALD1Q05682 793 aaKnown RBP19.48■□□□□ 0.71
PTPRU-201ENST00000345512 ANKRD45Q5TZF3 282 aa19.48■□□□□ 0.71
PTPRU-201ENST00000345512 PDZRN3Q9UPQ7 1066 aa19.48■□□□□ 0.71
PTPRU-201ENST00000345512 RSPH6AQ9H0K4 717 aa19.47■□□□□ 0.71
PTPRU-201ENST00000345512 DISP3Q9P2K9 1392 aa19.47■□□□□ 0.71
PTPRU-201ENST00000345512 C22orf23Q9BZE7 217 aa19.47■□□□□ 0.71
PTPRU-201ENST00000345512 CHMP5Q9NZZ3 219 aa19.47■□□□□ 0.71
PTPRU-201ENST00000345512 RALGAPBQ86X10 1494 aa19.46■□□□□ 0.71
PTPRU-201ENST00000345512 MSNP26038 577 aaKnown RBP19.46■□□□□ 0.71
PTPRU-201ENST00000345512 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.46■□□□□ 0.71
PTPRU-201ENST00000345512 DDX11L8A8MPP1 907 aa19.46■□□□□ 0.71
PTPRU-201ENST00000345512 SLC12A5Q9H2X9 1139 aa19.46■□□□□ 0.71
PTPRU-201ENST00000345512 TEX14Q8IWB6 1497 aa19.45■□□□□ 0.7
PTPRU-201ENST00000345512 NUP153P49790 1475 aaKnown RBP19.45■□□□□ 0.7
PTPRU-201ENST00000345512 DNTTIP2Q5QJE6 756 aaKnown RBP19.45■□□□□ 0.7
PTPRU-201ENST00000345512 ZNF608Q9ULD9 1512 aaPredicted RBP19.45■□□□□ 0.7
PTPRU-201ENST00000345512 AAMPQ13685 434 aa19.44■□□□□ 0.7
PTPRU-201ENST00000345512 CCDC141Q6ZP82 1450 aa19.44■□□□□ 0.7
PTPRU-201ENST00000345512 RNF123Q5XPI4 1314 aa19.44■□□□□ 0.7
PTPRU-201ENST00000345512 RIPK4P57078 832 aa19.44■□□□□ 0.7
PTPRU-201ENST00000345512 GRIN2AQ12879 1464 aa19.44■□□□□ 0.7
PTPRU-201ENST00000345512 LNPKQ9C0E8 428 aa19.43■□□□□ 0.7
PTPRU-201ENST00000345512 VGFO15240 615 aaPredicted RBP19.43■□□□□ 0.7
PTPRU-201ENST00000345512 PTMSP20962 102 aa19.43■□□□□ 0.7
PTPRU-201ENST00000345512 C14orf37Q86TY3 774 aa19.42■□□□□ 0.7
PTPRU-201ENST00000345512 CFAP44Q96MT7 982 aa19.42■□□□□ 0.7
PTPRU-201ENST00000345512 PARD3Q8TEW0 1356 aa19.42■□□□□ 0.7
PTPRU-201ENST00000345512 PZPP20742 1482 aa19.41■□□□□ 0.7
PTPRU-201ENST00000345512 PLEKHG5O94827 1062 aa19.41■□□□□ 0.7
PTPRU-201ENST00000345512 HAP1P54257 671 aaPredicted RBP19.41■□□□□ 0.7
PTPRU-201ENST00000345512 WWC1Q8IX03 1113 aa19.41■□□□□ 0.7
PTPRU-201ENST00000345512 GGNBP2Q9H3C7 697 aa19.41■□□□□ 0.7
PTPRU-201ENST00000345512 MINK1Q8N4C8 1332 aaPredicted RBP19.41■□□□□ 0.7
PTPRU-201ENST00000345512 SPATA31E1Q6ZUB1 1445 aa19.4■□□□□ 0.7
PTPRU-201ENST00000345512 MAGI3Q5TCQ9 1506 aa19.4■□□□□ 0.7
PTPRU-201ENST00000345512 PLCB2Q00722 1185 aa19.4■□□□□ 0.7
PTPRU-201ENST00000345512 ZBTB7CA1YPR0 619 aa19.39■□□□□ 0.7
PTPRU-201ENST00000345512 MLECQ14165 292 aa19.39■□□□□ 0.69
PTPRU-201ENST00000345512 PLEKHH2Q8IVE3 1493 aa19.39■□□□□ 0.69
PTPRU-201ENST00000345512 TSR2Q969E8 191 aaKnown RBP19.39■□□□□ 0.69
PTPRU-201ENST00000345512 CABP2Q9NPB3 220 aa19.38■□□□□ 0.69
PTPRU-201ENST00000345512 DIAPH1O60610 1272 aaKnown RBP19.38■□□□□ 0.69
PTPRU-201ENST00000345512 LRPPRCP42704 1394 aaKnown RBP19.38■□□□□ 0.69
PTPRU-201ENST00000345512 EXOSC9Q06265 439 aaKnown RBP19.37■□□□□ 0.69
PTPRU-201ENST00000345512 WDR62O43379 1518 aa19.37■□□□□ 0.69
PTPRU-201ENST00000345512 PER1O15534 1290 aaPredicted RBP19.37■□□□□ 0.69
PTPRU-201ENST00000345512 DDX49Q9Y6V7 483 aaKnown RBP19.36■□□□□ 0.69
PTPRU-201ENST00000345512 TESK2Q96S53 571 aa19.35■□□□□ 0.69
PTPRU-201ENST00000345512 MCCP23508 829 aa19.34■□□□□ 0.69
PTPRU-201ENST00000345512 SAMD9Q5K651 1589 aa19.34■□□□□ 0.69
PTPRU-201ENST00000345512 KIF16BQ96L93 1317 aa19.34■□□□□ 0.69
PTPRU-201ENST00000345512 KIF14Q15058 1648 aa19.34■□□□□ 0.69
PTPRU-201ENST00000345512 RAPGEF6Q8TEU7 1601 aa19.34■□□□□ 0.69
PTPRU-201ENST00000345512 TRAK2O60296 914 aa19.33■□□□□ 0.69
PTPRU-201ENST00000345512 WDR63Q8IWG1 891 aa19.33■□□□□ 0.69
PTPRU-201ENST00000345512 NKTRP30414 1462 aaKnown RBP19.33■□□□□ 0.69
PTPRU-201ENST00000345512 RTF1Q92541 710 aaKnown RBP19.33■□□□□ 0.68
PTPRU-201ENST00000345512 KDM6BO15054 1643 aa19.33■□□□□ 0.68
PTPRU-201ENST00000345512 PRAG1Q86YV5 1406 aa19.33■□□□□ 0.68
PTPRU-201ENST00000345512 SCAPERQ9BY12 1400 aa19.33■□□□□ 0.68
PTPRU-201ENST00000345512 IGHDP01880 384 aa19.32■□□□□ 0.68
PTPRU-201ENST00000345512 NINLQ9Y2I6 1382 aa19.32■□□□□ 0.68
PTPRU-201ENST00000345512 SLC4A10Q6U841 1118 aa19.32■□□□□ 0.68
PTPRU-201ENST00000345512 SKOR2Q2VWA4 1001 aaPredicted RBP19.31■□□□□ 0.68
PTPRU-201ENST00000345512 LMOD3Q0VAK6 560 aa19.31■□□□□ 0.68
PTPRU-201ENST00000345512 MVPQ14764 893 aaKnown RBP19.31■□□□□ 0.68
PTPRU-201ENST00000345512 AMER1Q5JTC6 1135 aaPredicted RBP19.31■□□□□ 0.68
PTPRU-201ENST00000345512 DNMT1P26358 1616 aaKnown RBP19.3■□□□□ 0.68
PTPRU-201ENST00000345512 RARSP54136 660 aaKnown RBP19.3■□□□□ 0.68
PTPRU-201ENST00000345512 FOXD4L5Q5VV16 416 aaPredicted RBP19.3■□□□□ 0.68
PTPRU-201ENST00000345512 FOXD4L4Q8WXT5 416 aaPredicted RBP19.3■□□□□ 0.68
PTPRU-201ENST00000345512 OS9Q13438 667 aaPredicted RBP19.29■□□□□ 0.68
PTPRU-201ENST00000345512 HMOX1P09601 288 aa19.29■□□□□ 0.68
PTPRU-201ENST00000345512 C8orf34Q49A92 452 aa19.29■□□□□ 0.68
PTPRU-201ENST00000345512 NOL8Q76FK4 1167 aaKnown RBP19.29■□□□□ 0.68
PTPRU-201ENST00000345512 FAM43AQ8N2R8 423 aa19.29■□□□□ 0.68
PTPRU-201ENST00000345512 ST18O60284 1047 aa19.28■□□□□ 0.68
PTPRU-201ENST00000345512 NOB1Q9ULX3 412 aaKnown RBP19.28■□□□□ 0.68
PTPRU-201ENST00000345512 PLEKHH1Q9ULM0 1364 aa19.27■□□□□ 0.68
PTPRU-201ENST00000345512 UHRF1BP1Q6BDS2 1440 aa19.27■□□□□ 0.68
PTPRU-201ENST00000345512 HMMRO75330 724 aa19.27■□□□□ 0.68
PTPRU-201ENST00000345512 GCC2Q8IWJ2 1684 aa19.27■□□□□ 0.68
PTPRU-201ENST00000345512 MRE11P49959 708 aa19.27■□□□□ 0.68
PTPRU-201ENST00000345512 HSP90AA2PQ14568 343 aaPredicted RBP19.27■□□□□ 0.67
PTPRU-201ENST00000345512 NSD3Q9BZ95 1437 aa19.26■□□□□ 0.67
PTPRU-201ENST00000345512 TRIM6-TRIM34B2RNG4 842 aa19.25■□□□□ 0.67
PTPRU-201ENST00000345512 ATF7IPQ6VMQ6 1270 aa19.25■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms