RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 SPATA31D1Q6ZQQ2 1576 aa21.67■■□□□ 1.06
LIMS1-202ENST00000338045 PPLO60437 1756 aa21.65■■□□□ 1.06
LIMS1-202ENST00000338045 FBXO31Q5XUX0 539 aaPredicted RBP21.65■■□□□ 1.06
LIMS1-202ENST00000338045 CHGAP10645 457 aaKnown RBP21.64■■□□□ 1.06
LIMS1-202ENST00000338045 ARID4BQ4LE39 1312 aaPredicted RBP21.63■■□□□ 1.05
LIMS1-202ENST00000338045 ADGRF5Q8IZF2 1346 aa21.63■■□□□ 1.05
LIMS1-202ENST00000338045 KIF7Q2M1P5 1343 aa21.63■■□□□ 1.05
LIMS1-202ENST00000338045 ST20-MTHFSA0A0A6YYL1 179 aa21.62■■□□□ 1.05
LIMS1-202ENST00000338045 ZMYM3Q14202 1370 aa21.62■■□□□ 1.05
LIMS1-202ENST00000338045 TMEM131LA2VDJ0 1609 aa21.62■■□□□ 1.05
LIMS1-202ENST00000338045 NEXMIFQ5QGS0 1516 aa21.6■■□□□ 1.05
LIMS1-202ENST00000338045 ESF1Q9H501 851 aaKnown RBP21.6■■□□□ 1.05
LIMS1-202ENST00000338045 PIK3C2GO75747 1445 aa21.59■■□□□ 1.05
LIMS1-202ENST00000338045 IQGAP1P46940 1657 aa21.58■■□□□ 1.05
LIMS1-202ENST00000338045 ZFYVE9O95405 1425 aa21.57■■□□□ 1.04
LIMS1-202ENST00000338045 SCAF11Q99590 1463 aaKnown RBP21.56■■□□□ 1.04
LIMS1-202ENST00000338045 CFAP70Q5T0N1 1121 aa21.55■■□□□ 1.04
LIMS1-202ENST00000338045 MYO5BQ9ULV0 1848 aa21.54■■□□□ 1.04
LIMS1-202ENST00000338045 SETBP1Q9Y6X0 1596 aa21.54■■□□□ 1.04
LIMS1-202ENST00000338045 VGFO15240 615 aaPredicted RBP21.54■■□□□ 1.04
LIMS1-202ENST00000338045 TESK2Q96S53 571 aa21.53■■□□□ 1.04
LIMS1-202ENST00000338045 C14orf93Q9H972 538 aaKnown RBP21.52■■□□□ 1.04
LIMS1-202ENST00000338045 A2ML1A8K2U0 1454 aa21.5■■□□□ 1.03
LIMS1-202ENST00000338045 ADGRB1O14514 1584 aa21.49■■□□□ 1.03
LIMS1-202ENST00000338045 TNRQ92752 1358 aa21.48■■□□□ 1.03
LIMS1-202ENST00000338045 ANP32CO43423 234 aa21.47■■□□□ 1.03
LIMS1-202ENST00000338045 EIF3AQ14152 1382 aaKnown RBP21.47■■□□□ 1.03
LIMS1-202ENST00000338045 FER1L4A9Z1Z3 1794 aa21.46■■□□□ 1.03
LIMS1-202ENST00000338045 STAG3Q9UJ98 1225 aa21.45■■□□□ 1.02
LIMS1-202ENST00000338045 KDM5AP29375 1690 aaKnown RBP21.45■■□□□ 1.02
LIMS1-202ENST00000338045 DISP3Q9P2K9 1392 aa21.43■■□□□ 1.02
LIMS1-202ENST00000338045 C3P01024 1663 aa21.43■■□□□ 1.02
LIMS1-202ENST00000338045 NUTM2DQ5VT03 806 aaPredicted RBP21.43■■□□□ 1.02
LIMS1-202ENST00000338045 MYO3AQ8NEV4 1616 aa21.42■■□□□ 1.02
LIMS1-202ENST00000338045 TMF1P82094 1093 aa21.42■■□□□ 1.02
LIMS1-202ENST00000338045 NLRP1Q9C000 1473 aa21.41■■□□□ 1.02
LIMS1-202ENST00000338045 RIMS2Q9UQ26 1411 aa21.4■■□□□ 1.02
LIMS1-202ENST00000338045 CCER2I3L3R5 266 aa21.4■■□□□ 1.02
LIMS1-202ENST00000338045 POLR3GLQ9BT43 218 aa21.39■■□□□ 1.02
LIMS1-202ENST00000338045 SBNO2Q9Y2G9 1366 aa21.39■■□□□ 1.01
LIMS1-202ENST00000338045 SLC24A1O60721 1099 aa21.39■■□□□ 1.01
LIMS1-202ENST00000338045 CEBPAP49715 358 aaPredicted RBP21.37■■□□□ 1.01
LIMS1-202ENST00000338045 UBR1Q8IWV7 1749 aa21.37■■□□□ 1.01
LIMS1-202ENST00000338045 TMEM132EQ6IEE7 984 aa21.37■■□□□ 1.01
LIMS1-202ENST00000338045 ASXL1Q8IXJ9 1541 aa21.37■■□□□ 1.01
LIMS1-202ENST00000338045 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.35■■□□□ 1.01
LIMS1-202ENST00000338045 ALKQ9UM73 1620 aa21.34■■□□□ 1.01
LIMS1-202ENST00000338045 CDCA8Q53HL2 280 aa21.34■■□□□ 1.01
LIMS1-202ENST00000338045 TMEM2Q9UHN6 1383 aa21.33■■□□□ 1
LIMS1-202ENST00000338045 CENPJQ9HC77 1338 aaPredicted RBP21.32■■□□□ 1
LIMS1-202ENST00000338045 PRKRIP1Q9H875 184 aaPredicted RBP21.32■■□□□ 1
LIMS1-202ENST00000338045 TRAK1Q9UPV9 953 aa21.32■■□□□ 1
LIMS1-202ENST00000338045 ADAMTSL3P82987 1691 aa21.32■■□□□ 1
LIMS1-202ENST00000338045 ARHGEF28Q8N1W1 1705 aaKnown RBP21.31■■□□□ 1
LIMS1-202ENST00000338045 HDGFP51858 240 aaKnown RBP21.3■■□□□ 1
LIMS1-202ENST00000338045 SETD1AO15047 1707 aaKnown RBP21.29■■□□□ 1
LIMS1-202ENST00000338045 PTPRMP28827 1452 aa21.28■■□□□ 1
LIMS1-202ENST00000338045 NRXN3Q9Y4C0 1643 aa21.28■■□□□ 1
LIMS1-202ENST00000338045 RIMS1Q86UR5 1692 aaKnown RBP21.28■■□□□ 1
LIMS1-202ENST00000338045 QRICH2Q9H0J4 1663 aa21.28■■□□□ 1
LIMS1-202ENST00000338045 YTHDC2Q9H6S0 1430 aaKnown RBP21.27■■□□□ 1
LIMS1-202ENST00000338045 YTHDC1Q96MU7 727 aaKnown RBP21.26■□□□□ 0.99
LIMS1-202ENST00000338045 SLIT1O75093 1534 aa21.25■□□□□ 0.99
LIMS1-202ENST00000338045 PER1O15534 1290 aaPredicted RBP21.25■□□□□ 0.99
LIMS1-202ENST00000338045 ARHGAP23Q9P227 1491 aa21.25■□□□□ 0.99
LIMS1-202ENST00000338045 MYOM1P52179 1685 aa21.23■□□□□ 0.99
LIMS1-202ENST00000338045 PANK3Q9H999 370 aa21.22■□□□□ 0.99
LIMS1-202ENST00000338045 DLC1Q96QB1 1528 aa21.21■□□□□ 0.99
LIMS1-202ENST00000338045 LRPPRCP42704 1394 aaKnown RBP21.21■□□□□ 0.99
LIMS1-202ENST00000338045 KTN1Q86UP2 1357 aaKnown RBP21.21■□□□□ 0.99
LIMS1-202ENST00000338045 CENPBP07199 599 aaPredicted RBP21.21■□□□□ 0.99
LIMS1-202ENST00000338045 SENP3Q9H4L4 574 aaPredicted RBP21.21■□□□□ 0.99
LIMS1-202ENST00000338045 PLEKHG1Q9ULL1 1385 aa21.21■□□□□ 0.99
LIMS1-202ENST00000338045 PUS7Q96PZ0 661 aaKnown RBP21.2■□□□□ 0.98
LIMS1-202ENST00000338045 STK26Q9P289 416 aa21.2■□□□□ 0.98
LIMS1-202ENST00000338045 ABCC11Q96J66 1382 aa21.19■□□□□ 0.98
LIMS1-202ENST00000338045 LTKP29376 864 aa21.19■□□□□ 0.98
LIMS1-202ENST00000338045 PLPPR3Q6T4P5 718 aa21.19■□□□□ 0.98
LIMS1-202ENST00000338045 THEMISQ8N1K5 641 aaPredicted RBP21.19■□□□□ 0.98
LIMS1-202ENST00000338045 CEP170BQ9Y4F5 1589 aaPredicted RBP21.18■□□□□ 0.98
LIMS1-202ENST00000338045 METP08581 1390 aa21.17■□□□□ 0.98
LIMS1-202ENST00000338045 ADAMTS13Q76LX8 1427 aa21.17■□□□□ 0.98
LIMS1-202ENST00000338045 TULP4Q9NRJ4 1543 aa21.17■□□□□ 0.98
LIMS1-202ENST00000338045 TXNDC2Q86VQ3 553 aa21.16■□□□□ 0.98
LIMS1-202ENST00000338045 MED14O60244 1454 aa21.15■□□□□ 0.98
LIMS1-202ENST00000338045 EID1Q9Y6B2 187 aa21.15■□□□□ 0.98
LIMS1-202ENST00000338045 EVC2Q86UK5 1308 aa21.15■□□□□ 0.98
LIMS1-202ENST00000338045 RALBP1Q15311 655 aa21.15■□□□□ 0.98
LIMS1-202ENST00000338045 PRAM1Q96QH2 718 aa21.15■□□□□ 0.98
LIMS1-202ENST00000338045 TECPR2O15040 1411 aa21.14■□□□□ 0.98
LIMS1-202ENST00000338045 ZNF142P52746 1687 aaPredicted RBP21.14■□□□□ 0.97
LIMS1-202ENST00000338045 PARD3Q8TEW0 1356 aa21.14■□□□□ 0.97
LIMS1-202ENST00000338045 KNDC1Q76NI1 1749 aa21.13■□□□□ 0.97
LIMS1-202ENST00000338045 CCDC184Q52MB2 194 aa21.13■□□□□ 0.97
LIMS1-202ENST00000338045 SETD1BQ9UPS6 1966 aaKnown RBP21.12■□□□□ 0.97
LIMS1-202ENST00000338045 SIRT1Q96EB6 747 aa21.11■□□□□ 0.97
LIMS1-202ENST00000338045 POGKQ9P215 609 aa21.11■□□□□ 0.97
LIMS1-202ENST00000338045 FAM135BQ49AJ0 1406 aa21.1■□□□□ 0.97
LIMS1-202ENST00000338045 SAFB2Q14151 953 aaKnown RBP eCLIP21.09■□□□□ 0.97
LIMS1-202ENST00000338045 CPS1P31327 1500 aa21.09■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms