RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 TRAPPC8Q9Y2L5 1435 aa8.8□□□□□ -1
SF3B1-201ENST00000335508 SLC26A8Q96RN1 970 aa8.8□□□□□ -1
SF3B1-201ENST00000335508 PTPN23Q9H3S7 1636 aa8.8□□□□□ -1
SF3B1-201ENST00000335508 A0A0G2JS52 829 aa8.8□□□□□ -1
SF3B1-201ENST00000335508 NUTM2FA1L443 756 aa8.8□□□□□ -1
SF3B1-201ENST00000335508 PRAM1Q96QH2 718 aa8.8□□□□□ -1
SF3B1-201ENST00000335508 NLRP6P59044 892 aa8.8□□□□□ -1
SF3B1-201ENST00000335508 PSME1Q06323 249 aa8.8□□□□□ -1
SF3B1-201ENST00000335508 RCAN3Q9UKA8 241 aa8.8□□□□□ -1
SF3B1-201ENST00000335508 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.79□□□□□ -1
SF3B1-201ENST00000335508 TULP1O00294 542 aaPredicted RBP8.79□□□□□ -1
SF3B1-201ENST00000335508 PTPRKQ15262 1439 aa8.79□□□□□ -1
SF3B1-201ENST00000335508 E9PSI1 815 aa8.79□□□□□ -1
SF3B1-201ENST00000335508 FRAT1Q92837 279 aaPredicted RBP8.79□□□□□ -1
SF3B1-201ENST00000335508 DUOX2Q9NRD8 1548 aa8.78□□□□□ -1
SF3B1-201ENST00000335508 LAS1LQ9Y4W2 734 aaKnown RBP8.78□□□□□ -1
SF3B1-201ENST00000335508 ADGRL2O95490 1459 aa8.78□□□□□ -1
SF3B1-201ENST00000335508 SLC12A5Q9H2X9 1139 aa8.78□□□□□ -1
SF3B1-201ENST00000335508 TNRQ92752 1358 aa8.77□□□□□ -1
SF3B1-201ENST00000335508 TEFQ10587 303 aa8.77□□□□□ -1.01
SF3B1-201ENST00000335508 AAMPQ13685 434 aa8.77□□□□□ -1.01
SF3B1-201ENST00000335508 SAMD9Q5K651 1589 aa8.77□□□□□ -1.01
SF3B1-201ENST00000335508 TBX22Q9Y458 520 aa8.77□□□□□ -1.01
SF3B1-201ENST00000335508 KIF21AQ7Z4S6 1674 aa8.76□□□□□ -1.01
SF3B1-201ENST00000335508 FBXO31Q5XUX0 539 aaPredicted RBP8.76□□□□□ -1.01
SF3B1-201ENST00000335508 NINLQ9Y2I6 1382 aa8.76□□□□□ -1.01
SF3B1-201ENST00000335508 FAM135AQ9P2D6 1515 aa8.75□□□□□ -1.01
SF3B1-201ENST00000335508 HSP90AA1P07900 732 aaKnown RBP8.75□□□□□ -1.01
SF3B1-201ENST00000335508 CADPS2Q86UW7 1296 aa8.75□□□□□ -1.01
SF3B1-201ENST00000335508 GGNBP2Q9H3C7 697 aa8.75□□□□□ -1.01
SF3B1-201ENST00000335508 APAF1O14727 1248 aa8.75□□□□□ -1.01
SF3B1-201ENST00000335508 MAGI2Q86UL8 1455 aa8.75□□□□□ -1.01
SF3B1-201ENST00000335508 RAPGEF4Q8WZA2 1011 aa8.75□□□□□ -1.01
SF3B1-201ENST00000335508 MTHFSP49914 203 aa8.74□□□□□ -1.01
SF3B1-201ENST00000335508 ZNF428Q96B54 188 aa8.74□□□□□ -1.01
SF3B1-201ENST00000335508 RUNDC1Q96C34 613 aa8.74□□□□□ -1.01
SF3B1-201ENST00000335508 ADGRF5Q8IZF2 1346 aa8.74□□□□□ -1.01
SF3B1-201ENST00000335508 HMMRO75330 724 aa8.74□□□□□ -1.01
SF3B1-201ENST00000335508 GNAI1P63096 354 aa8.74□□□□□ -1.01
SF3B1-201ENST00000335508 CABP2Q9NPB3 220 aa8.74□□□□□ -1.01
SF3B1-201ENST00000335508 CABP1Q9NZU7 370 aa8.73□□□□□ -1.01
SF3B1-201ENST00000335508 MAPKBP1O60336 1514 aa8.73□□□□□ -1.01
SF3B1-201ENST00000335508 RWDD1Q9H446 243 aaPredicted RBP8.73□□□□□ -1.01
SF3B1-201ENST00000335508 MBD5Q9P267 1494 aa8.73□□□□□ -1.01
SF3B1-201ENST00000335508 HMGB2P26583 209 aaKnown RBP8.72□□□□□ -1.01
SF3B1-201ENST00000335508 SCAF11Q99590 1463 aaKnown RBP8.72□□□□□ -1.01
SF3B1-201ENST00000335508 KCNH5Q8NCM2 988 aa8.72□□□□□ -1.01
SF3B1-201ENST00000335508 SYCP2Q9BX26 1530 aa8.72□□□□□ -1.01
SF3B1-201ENST00000335508 CDK19Q9BWU1 502 aa8.72□□□□□ -1.01
SF3B1-201ENST00000335508 API5Q9BZZ5 524 aaKnown RBP8.72□□□□□ -1.01
SF3B1-201ENST00000335508 GAS2L2Q8NHY3 880 aa8.72□□□□□ -1.01
SF3B1-201ENST00000335508 NUDT16Q96DE0 195 aaKnown RBP8.72□□□□□ -1.01
SF3B1-201ENST00000335508 SMC4Q9NTJ3 1288 aa8.72□□□□□ -1.01
SF3B1-201ENST00000335508 PNISRQ8TF01 805 aaKnown RBP8.71□□□□□ -1.01
SF3B1-201ENST00000335508 AMOTL2Q9Y2J4 779 aa8.71□□□□□ -1.01
SF3B1-201ENST00000335508 PPP2R1AP30153 589 aa8.71□□□□□ -1.01
SF3B1-201ENST00000335508 MLH3Q9UHC1 1453 aa8.71□□□□□ -1.02
SF3B1-201ENST00000335508 CT47B1P0C2W7 299 aaPredicted RBP8.71□□□□□ -1.02
SF3B1-201ENST00000335508 ATP10AO60312 1499 aa8.71□□□□□ -1.02
SF3B1-201ENST00000335508 NSD2O96028 1365 aa8.71□□□□□ -1.02
SF3B1-201ENST00000335508 WASLO00401 505 aaPredicted RBP8.71□□□□□ -1.02
SF3B1-201ENST00000335508 C1orf141Q5JVX7 400 aa8.71□□□□□ -1.02
SF3B1-201ENST00000335508 A0A0U1RQG5 324 aaPredicted RBP8.7□□□□□ -1.02
SF3B1-201ENST00000335508 CEBPAP49715 358 aaPredicted RBP8.7□□□□□ -1.02
SF3B1-201ENST00000335508 ABTB2Q8N961 1025 aa8.7□□□□□ -1.02
SF3B1-201ENST00000335508 TCP11L2Q8N4U5 519 aa8.7□□□□□ -1.02
SF3B1-201ENST00000335508 ARXQ96QS3 562 aa8.7□□□□□ -1.02
SF3B1-201ENST00000335508 KIF16BQ96L93 1317 aa8.7□□□□□ -1.02
SF3B1-201ENST00000335508 LTV1Q96GA3 475 aaPredicted RBP8.7□□□□□ -1.02
SF3B1-201ENST00000335508 ABCA8O94911 1581 aa8.7□□□□□ -1.02
SF3B1-201ENST00000335508 PHF8Q9UPP1 1060 aa8.7□□□□□ -1.02
SF3B1-201ENST00000335508 ARHGEF12Q9NZN5 1544 aa8.7□□□□□ -1.02
SF3B1-201ENST00000335508 IRX6P78412 446 aaPredicted RBP8.7□□□□□ -1.02
SF3B1-201ENST00000335508 CASC1Q6TDU7 716 aa8.7□□□□□ -1.02
SF3B1-201ENST00000335508 ESCO1Q5FWF5 840 aa8.69□□□□□ -1.02
SF3B1-201ENST00000335508 AEBP2Q6ZN18 517 aaPredicted RBP8.69□□□□□ -1.02
SF3B1-201ENST00000335508 BECN1Q14457 450 aa8.69□□□□□ -1.02
SF3B1-201ENST00000335508 FCHSD2O94868 740 aa8.69□□□□□ -1.02
SF3B1-201ENST00000335508 ZKSCAN2Q63HK3 967 aa8.69□□□□□ -1.02
SF3B1-201ENST00000335508 ARAP3Q8WWN8 1544 aa8.69□□□□□ -1.02
SF3B1-201ENST00000335508 ITSN2Q9NZM3 1697 aa8.69□□□□□ -1.02
SF3B1-201ENST00000335508 ZMYM3Q14202 1370 aa8.69□□□□□ -1.02
SF3B1-201ENST00000335508 NLRP2Q9NX02 1062 aa8.69□□□□□ -1.02
SF3B1-201ENST00000335508 NOS1P29475 1434 aa8.68□□□□□ -1.02
SF3B1-201ENST00000335508 SBNO2Q9Y2G9 1366 aa8.68□□□□□ -1.02
SF3B1-201ENST00000335508 SIRT1Q96EB6 747 aa8.68□□□□□ -1.02
SF3B1-201ENST00000335508 PRDM11Q9NQV5 511 aa8.68□□□□□ -1.02
SF3B1-201ENST00000335508 RIPK4P57078 832 aa8.68□□□□□ -1.02
SF3B1-201ENST00000335508 PMFBP1Q8TBY8 1022 aa8.68□□□□□ -1.02
SF3B1-201ENST00000335508 CTTNBP2Q8WZ74 1663 aa8.68□□□□□ -1.02
SF3B1-201ENST00000335508 DNAJC5Q9H3Z4 198 aa8.67□□□□□ -1.02
SF3B1-201ENST00000335508 EVA1CP58658 441 aa8.67□□□□□ -1.02
SF3B1-201ENST00000335508 PLEKHO1Q53GL0 409 aaPredicted RBP8.66□□□□□ -1.02
SF3B1-201ENST00000335508 TTC5Q8N0Z6 440 aa8.66□□□□□ -1.02
SF3B1-201ENST00000335508 DDRGK1Q96HY6 314 aa8.66□□□□□ -1.02
SF3B1-201ENST00000335508 ADAMTS8Q9UP79 889 aa8.66□□□□□ -1.02
SF3B1-201ENST00000335508 CCDC9Q9Y3X0 531 aaKnown RBP8.66□□□□□ -1.02
SF3B1-201ENST00000335508 NEXNQ0ZGT2 675 aa8.66□□□□□ -1.02
SF3B1-201ENST00000335508 OS9Q13438 667 aaPredicted RBP8.66□□□□□ -1.02
SF3B1-201ENST00000335508 SENP3-EIF4A1A0A087X0R7 540 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 103.4 ms