RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 ARHGEF12Q9NZN5 1544 aa17.23■□□□□ 0.35
CCDC88C-201ENST00000331194 A0A0U1RQG5 324 aaPredicted RBP17.23■□□□□ 0.35
CCDC88C-201ENST00000331194 FSD2A1L4K1 749 aa17.23■□□□□ 0.35
CCDC88C-201ENST00000331194 PLEKHH2Q8IVE3 1493 aa17.22■□□□□ 0.35
CCDC88C-201ENST00000331194 MCM4P33991 863 aa17.22■□□□□ 0.35
CCDC88C-201ENST00000331194 TNNQ9UQP3 1299 aa17.22■□□□□ 0.35
CCDC88C-201ENST00000331194 GPATCH8Q9UKJ3 1502 aaKnown RBP17.22■□□□□ 0.35
CCDC88C-201ENST00000331194 NLRP1Q9C000 1473 aa17.21■□□□□ 0.35
CCDC88C-201ENST00000331194 PRAG1Q86YV5 1406 aa17.21■□□□□ 0.35
CCDC88C-201ENST00000331194 ERBB4Q15303 1308 aa17.21■□□□□ 0.35
CCDC88C-201ENST00000331194 CANXP27824 592 aaKnown RBP17.2■□□□□ 0.34
CCDC88C-201ENST00000331194 KNSTRNQ9Y448 316 aa17.2■□□□□ 0.34
CCDC88C-201ENST00000331194 EIF3AQ14152 1382 aaKnown RBP17.2■□□□□ 0.34
CCDC88C-201ENST00000331194 TMF1P82094 1093 aa17.2■□□□□ 0.34
CCDC88C-201ENST00000331194 CLUAP1Q96AJ1 413 aa17.2■□□□□ 0.34
CCDC88C-201ENST00000331194 COL17A1Q9UMD9 1497 aaPredicted RBP17.2■□□□□ 0.34
CCDC88C-201ENST00000331194 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.19■□□□□ 0.34
CCDC88C-201ENST00000331194 TRMT2AQ8IZ69 625 aaKnown RBP17.19■□□□□ 0.34
CCDC88C-201ENST00000331194 ERBINQ96RT1 1412 aa17.19■□□□□ 0.34
CCDC88C-201ENST00000331194 TRAK2O60296 914 aa17.19■□□□□ 0.34
CCDC88C-201ENST00000331194 TBC1D32Q96NH3 1257 aa17.18■□□□□ 0.34
CCDC88C-201ENST00000331194 INSRP06213 1382 aa17.18■□□□□ 0.34
CCDC88C-201ENST00000331194 ADGBQ8N7X0 1667 aa17.18■□□□□ 0.34
CCDC88C-201ENST00000331194 ADGRL2O95490 1459 aa17.17■□□□□ 0.34
CCDC88C-201ENST00000331194 PCDHB15Q9Y5E8 787 aa17.17■□□□□ 0.34
CCDC88C-201ENST00000331194 RRP9O43818 475 aaKnown RBP17.16■□□□□ 0.34
CCDC88C-201ENST00000331194 KDM5DQ9BY66 1539 aa17.16■□□□□ 0.34
CCDC88C-201ENST00000331194 MAGI2Q86UL8 1455 aa17.16■□□□□ 0.34
CCDC88C-201ENST00000331194 MAPK8IP3Q9UPT6 1336 aa17.16■□□□□ 0.34
CCDC88C-201ENST00000331194 AMER1Q5JTC6 1135 aaPredicted RBP17.16■□□□□ 0.34
CCDC88C-201ENST00000331194 BCL2L13Q9BXK5 485 aa17.16■□□□□ 0.34
CCDC88C-201ENST00000331194 TSPY4P0CV99 314 aa17.15■□□□□ 0.34
CCDC88C-201ENST00000331194 TSPY10P0CW01 314 aa17.15■□□□□ 0.34
CCDC88C-201ENST00000331194 NEUROD2Q15784 382 aa17.15■□□□□ 0.34
CCDC88C-201ENST00000331194 UPF2Q9HAU5 1272 aaKnown RBP17.15■□□□□ 0.34
CCDC88C-201ENST00000331194 TRPM1Q7Z4N2 1603 aa17.15■□□□□ 0.34
CCDC88C-201ENST00000331194 PDZRN3Q9UPQ7 1066 aa17.14■□□□□ 0.34
CCDC88C-201ENST00000331194 NKTRP30414 1462 aaKnown RBP17.14■□□□□ 0.33
CCDC88C-201ENST00000331194 C9orf84Q5VXU9 1444 aa17.14■□□□□ 0.33
CCDC88C-201ENST00000331194 VIRMAQ69YN4 1812 aaKnown RBP17.13■□□□□ 0.33
CCDC88C-201ENST00000331194 RLBP1P12271 317 aa17.13■□□□□ 0.33
CCDC88C-201ENST00000331194 ESPNB1AK53 854 aa17.13■□□□□ 0.33
CCDC88C-201ENST00000331194 MYH16Q9H6N6 1097 aa17.13■□□□□ 0.33
CCDC88C-201ENST00000331194 GRPEL1Q9HAV7 217 aa17.12■□□□□ 0.33
CCDC88C-201ENST00000331194 ABCA8O94911 1581 aa17.12■□□□□ 0.33
CCDC88C-201ENST00000331194 CGNL1Q0VF96 1302 aa17.12■□□□□ 0.33
CCDC88C-201ENST00000331194 CCDC144AA2RUR9 1427 aa17.12■□□□□ 0.33
CCDC88C-201ENST00000331194 MFAP1P55081 439 aaKnown RBP17.12■□□□□ 0.33
CCDC88C-201ENST00000331194 OSCARQ8IYS5 282 aa17.11■□□□□ 0.33
CCDC88C-201ENST00000331194 CENPJQ9HC77 1338 aaPredicted RBP17.11■□□□□ 0.33
CCDC88C-201ENST00000331194 RRP7AQ9Y3A4 280 aaKnown RBP17.11■□□□□ 0.33
CCDC88C-201ENST00000331194 E9PSI1 815 aa17.1■□□□□ 0.33
CCDC88C-201ENST00000331194 MRE11P49959 708 aa17.1■□□□□ 0.33
CCDC88C-201ENST00000331194 GAS2L3Q86XJ1 694 aa17.1■□□□□ 0.33
CCDC88C-201ENST00000331194 A2MP01023 1474 aa17.1■□□□□ 0.33
CCDC88C-201ENST00000331194 PDE3AQ14432 1141 aa17.1■□□□□ 0.33
CCDC88C-201ENST00000331194 CROCC2H7BZ55 1655 aa17.09■□□□□ 0.33
CCDC88C-201ENST00000331194 GPRASP1Q5JY77 1395 aa17.08■□□□□ 0.33
CCDC88C-201ENST00000331194 CHMP5Q9NZZ3 219 aa17.07■□□□□ 0.32
CCDC88C-201ENST00000331194 WDR7Q9Y4E6 1490 aa17.07■□□□□ 0.32
CCDC88C-201ENST00000331194 AFAP1Q8N556 730 aa17.07■□□□□ 0.32
CCDC88C-201ENST00000331194 C22orf23Q9BZE7 217 aa17.06■□□□□ 0.32
CCDC88C-201ENST00000331194 PLA2R1Q13018 1463 aa17.06■□□□□ 0.32
CCDC88C-201ENST00000331194 PRDM15P57071 1507 aaPredicted RBP17.05■□□□□ 0.32
CCDC88C-201ENST00000331194 CYB5RLQ6IPT4 315 aa17.04■□□□□ 0.32
CCDC88C-201ENST00000331194 WWC1Q8IX03 1113 aa17.04■□□□□ 0.32
CCDC88C-201ENST00000331194 TRIM44Q96DX7 344 aaPredicted RBP17.04■□□□□ 0.32
CCDC88C-201ENST00000331194 RBM10P98175 930 aaKnown RBP17.04■□□□□ 0.32
CCDC88C-201ENST00000331194 FOXD4L1Q9NU39 408 aa17.03■□□□□ 0.32
CCDC88C-201ENST00000331194 FAM135AQ9P2D6 1515 aa17.03■□□□□ 0.32
CCDC88C-201ENST00000331194 ITSN2Q9NZM3 1697 aa17.03■□□□□ 0.32
CCDC88C-201ENST00000331194 PMFBP1Q8TBY8 1022 aa17.03■□□□□ 0.32
CCDC88C-201ENST00000331194 RARSP54136 660 aaKnown RBP17.02■□□□□ 0.32
CCDC88C-201ENST00000331194 TNNT2P45379 298 aaPredicted RBP17.02■□□□□ 0.31
CCDC88C-201ENST00000331194 ZNF692Q9BU19 519 aaPredicted RBP17.02■□□□□ 0.31
CCDC88C-201ENST00000331194 ABCC10Q5T3U5 1492 aa17.02■□□□□ 0.31
CCDC88C-201ENST00000331194 CDC42BPAQ5VT25 1732 aa17.01■□□□□ 0.31
CCDC88C-201ENST00000331194 ARHGAP5Q13017 1502 aa17■□□□□ 0.31
CCDC88C-201ENST00000331194 ADCY10Q96PN6 1610 aa17■□□□□ 0.31
CCDC88C-201ENST00000331194 KIAA1211Q6ZU35 1233 aa16.99■□□□□ 0.31
CCDC88C-201ENST00000331194 TNPO1Q92973 898 aaKnown RBP16.99■□□□□ 0.31
CCDC88C-201ENST00000331194 RTEL1-TNFRSF6BF6WH68 1400 aa16.98■□□□□ 0.31
CCDC88C-201ENST00000331194 TTC37Q6PGP7 1564 aa16.97■□□□□ 0.31
CCDC88C-201ENST00000331194 HSCBQ8IWL3 235 aa16.97■□□□□ 0.31
CCDC88C-201ENST00000331194 RWDD1Q9H446 243 aaPredicted RBP16.97■□□□□ 0.31
CCDC88C-201ENST00000331194 ARID3AQ99856 593 aa16.97■□□□□ 0.31
CCDC88C-201ENST00000331194 CLASP1Q7Z460 1538 aa16.96■□□□□ 0.31
CCDC88C-201ENST00000331194 DDX11L8A8MPP1 907 aa16.96■□□□□ 0.31
CCDC88C-201ENST00000331194 SENP3Q9H4L4 574 aaPredicted RBP16.96■□□□□ 0.31
CCDC88C-201ENST00000331194 ABCC2Q92887 1545 aa16.96■□□□□ 0.31
CCDC88C-201ENST00000331194 PIK3C2GO75747 1445 aa16.96■□□□□ 0.31
CCDC88C-201ENST00000331194 NPM1P06748 294 aaKnown RBP eCLIP16.95■□□□□ 0.3
CCDC88C-201ENST00000331194 CARD14Q9BXL6 1004 aa16.95■□□□□ 0.3
CCDC88C-201ENST00000331194 ASXL1Q8IXJ9 1541 aa16.95■□□□□ 0.3
CCDC88C-201ENST00000331194 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.94■□□□□ 0.3
CCDC88C-201ENST00000331194 SYCP2Q9BX26 1530 aa16.94■□□□□ 0.3
CCDC88C-201ENST00000331194 SHROOM2Q13796 1616 aa16.94■□□□□ 0.3
CCDC88C-201ENST00000331194 EFCAB2Q5VUJ9 269 aa16.93■□□□□ 0.3
CCDC88C-201ENST00000331194 PDCL3Q9H2J4 239 aa16.93■□□□□ 0.3
CCDC88C-201ENST00000331194 AAMPQ13685 434 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms