RNA–Protein interactions for RNA: ENST00000329397.5

PTP4A3-201, Transcript of protein tyrosine phosphatase type IVA, member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTP4A3, Length 2,785 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A3-201ENST00000329397 SPAG9O60271 1321 aaKnown RBP22.82■■□□□ 1.24
PTP4A3-201ENST00000329397 PLCH2O75038 1416 aa22.82■■□□□ 1.24
PTP4A3-201ENST00000329397 MS4A1P11836 297 aa22.81■■□□□ 1.24
PTP4A3-201ENST00000329397 SLC4A3P48751 1232 aa22.81■■□□□ 1.24
PTP4A3-201ENST00000329397 SPINK5Q9NQ38 1064 aaPredicted RBP22.81■■□□□ 1.24
PTP4A3-201ENST00000329397 NEFMP07197 916 aa22.79■■□□□ 1.24
PTP4A3-201ENST00000329397 GOLGA2Q08379 1002 aa22.78■■□□□ 1.24
PTP4A3-201ENST00000329397 IQGAP1P46940 1657 aa22.78■■□□□ 1.24
PTP4A3-201ENST00000329397 SHROOM2Q13796 1616 aa22.78■■□□□ 1.24
PTP4A3-201ENST00000329397 ABCC1P33527 1531 aa22.78■■□□□ 1.24
PTP4A3-201ENST00000329397 ZCCHC11Q5TAX3 1644 aaKnown RBP22.77■■□□□ 1.24
PTP4A3-201ENST00000329397 APAF1O14727 1248 aa22.77■■□□□ 1.24
PTP4A3-201ENST00000329397 CFAP70Q5T0N1 1121 aa22.77■■□□□ 1.24
PTP4A3-201ENST00000329397 CLTCL1P53675 1640 aa22.76■■□□□ 1.23
PTP4A3-201ENST00000329397 RGS3P49796 1198 aa22.75■■□□□ 1.23
PTP4A3-201ENST00000329397 KDM2BQ8NHM5 1336 aa22.75■■□□□ 1.23
PTP4A3-201ENST00000329397 SCAF11Q99590 1463 aaKnown RBP22.75■■□□□ 1.23
PTP4A3-201ENST00000329397 DMRT2Q9Y5R5 561 aa22.74■■□□□ 1.23
PTP4A3-201ENST00000329397 ZNF521Q96K83 1311 aa22.74■■□□□ 1.23
PTP4A3-201ENST00000329397 KIF3BO15066 747 aa22.74■■□□□ 1.23
PTP4A3-201ENST00000329397 UGGT1Q9NYU2 1555 aa22.74■■□□□ 1.23
PTP4A3-201ENST00000329397 BCAR3O75815 825 aa22.73■■□□□ 1.23
PTP4A3-201ENST00000329397 INSRP06213 1382 aa22.73■■□□□ 1.23
PTP4A3-201ENST00000329397 ASXL1Q8IXJ9 1541 aa22.72■■□□□ 1.23
PTP4A3-201ENST00000329397 PODXL2Q9NZ53 605 aa22.72■■□□□ 1.23
PTP4A3-201ENST00000329397 SPHKAPQ2M3C7 1700 aa22.72■■□□□ 1.23
PTP4A3-201ENST00000329397 MYOM1P52179 1685 aa22.71■■□□□ 1.23
PTP4A3-201ENST00000329397 SLFN5Q08AF3 891 aa22.71■■□□□ 1.23
PTP4A3-201ENST00000329397 TRPM2O94759 1503 aa22.71■■□□□ 1.23
PTP4A3-201ENST00000329397 ADGRF5Q8IZF2 1346 aa22.7■■□□□ 1.22
PTP4A3-201ENST00000329397 SYNMO15061 1565 aa22.7■■□□□ 1.22
PTP4A3-201ENST00000329397 TNNT2P45379 298 aaPredicted RBP22.69■■□□□ 1.22
PTP4A3-201ENST00000329397 CDCA8Q53HL2 280 aa22.69■■□□□ 1.22
PTP4A3-201ENST00000329397 CEP152O94986 1710 aa22.69■■□□□ 1.22
PTP4A3-201ENST00000329397 CARD14Q9BXL6 1004 aa22.68■■□□□ 1.22
PTP4A3-201ENST00000329397 ZFYVE16Q7Z3T8 1539 aa22.68■■□□□ 1.22
PTP4A3-201ENST00000329397 CENPQQ7L2Z9 268 aaPredicted RBP22.67■■□□□ 1.22
PTP4A3-201ENST00000329397 NEUROD2Q15784 382 aa22.65■■□□□ 1.22
PTP4A3-201ENST00000329397 CHGAP10645 457 aaKnown RBP22.64■■□□□ 1.22
PTP4A3-201ENST00000329397 PTPRTO14522 1441 aa22.64■■□□□ 1.21
PTP4A3-201ENST00000329397 PIK3C2GO75747 1445 aa22.64■■□□□ 1.21
PTP4A3-201ENST00000329397 SCAPERQ9BY12 1400 aa22.64■■□□□ 1.21
PTP4A3-201ENST00000329397 PKNOX2Q96KN3 472 aa22.64■■□□□ 1.21
PTP4A3-201ENST00000329397 C8orf34Q49A92 452 aa22.63■■□□□ 1.21
PTP4A3-201ENST00000329397 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.62■■□□□ 1.21
PTP4A3-201ENST00000329397 RRP7AQ9Y3A4 280 aaKnown RBP22.62■■□□□ 1.21
PTP4A3-201ENST00000329397 IL27Q8NEV9 243 aa22.61■■□□□ 1.21
PTP4A3-201ENST00000329397 EIF3AQ14152 1382 aaKnown RBP22.61■■□□□ 1.21
PTP4A3-201ENST00000329397 KDM5AP29375 1690 aaKnown RBP22.61■■□□□ 1.21
PTP4A3-201ENST00000329397 ERVK-7P63135 1459 aa22.61■■□□□ 1.21
PTP4A3-201ENST00000329397 SENP3Q9H4L4 574 aaPredicted RBP22.61■■□□□ 1.21
PTP4A3-201ENST00000329397 CFAP65Q6ZU64 1925 aaKnown RBP22.6■■□□□ 1.21
PTP4A3-201ENST00000329397 RTN4Q9NQC3 1192 aaKnown RBP22.6■■□□□ 1.21
PTP4A3-201ENST00000329397 KANK1Q14678 1352 aa22.59■■□□□ 1.21
PTP4A3-201ENST00000329397 FAM161AQ3B820 660 aa22.58■■□□□ 1.21
PTP4A3-201ENST00000329397 TRMT2AQ8IZ69 625 aaKnown RBP22.58■■□□□ 1.21
PTP4A3-201ENST00000329397 TET3O43151 1660 aa22.58■■□□□ 1.21
PTP4A3-201ENST00000329397 NKTRP30414 1462 aaKnown RBP22.58■■□□□ 1.2
PTP4A3-201ENST00000329397 DDRGK1Q96HY6 314 aa22.58■■□□□ 1.2
PTP4A3-201ENST00000329397 TRAK1Q9UPV9 953 aa22.58■■□□□ 1.2
PTP4A3-201ENST00000329397 ABCA6Q8N139 1617 aa22.57■■□□□ 1.2
PTP4A3-201ENST00000329397 IGHDP01880 384 aa22.57■■□□□ 1.2
PTP4A3-201ENST00000329397 ATP7AQ04656 1500 aa22.57■■□□□ 1.2
PTP4A3-201ENST00000329397 PANK1Q8TE04 598 aa22.57■■□□□ 1.2
PTP4A3-201ENST00000329397 FANCAO15360 1455 aa22.56■■□□□ 1.2
PTP4A3-201ENST00000329397 RTEL1-TNFRSF6BF6WH68 1400 aa22.56■■□□□ 1.2
PTP4A3-201ENST00000329397 PPM1GO15355 546 aaPredicted RBP22.55■■□□□ 1.2
PTP4A3-201ENST00000329397 DEPDC5O75140 1603 aa22.55■■□□□ 1.2
PTP4A3-201ENST00000329397 COG6Q9Y2V7 657 aa22.55■■□□□ 1.2
PTP4A3-201ENST00000329397 FRAT1Q92837 279 aaPredicted RBP22.55■■□□□ 1.2
PTP4A3-201ENST00000329397 CLASP1Q7Z460 1538 aa22.54■■□□□ 1.2
PTP4A3-201ENST00000329397 CANXP27824 592 aaKnown RBP22.54■■□□□ 1.2
PTP4A3-201ENST00000329397 TMEM132EQ6IEE7 984 aa22.54■■□□□ 1.2
PTP4A3-201ENST00000329397 SLC12A5Q9H2X9 1139 aa22.54■■□□□ 1.2
PTP4A3-201ENST00000329397 E9PSI1 815 aa22.53■■□□□ 1.2
PTP4A3-201ENST00000329397 NFKBIBQ15653 356 aa22.53■■□□□ 1.2
PTP4A3-201ENST00000329397 NUTM2DQ5VT03 806 aaPredicted RBP22.53■■□□□ 1.2
PTP4A3-201ENST00000329397 MAP3K4Q9Y6R4 1608 aa22.52■■□□□ 1.2
PTP4A3-201ENST00000329397 BCL2L13Q9BXK5 485 aa22.52■■□□□ 1.2
PTP4A3-201ENST00000329397 NPC1L1Q9UHC9 1359 aa22.52■■□□□ 1.2
PTP4A3-201ENST00000329397 TNNQ9UQP3 1299 aa22.52■■□□□ 1.2
PTP4A3-201ENST00000329397 WWC1Q8IX03 1113 aa22.51■■□□□ 1.19
PTP4A3-201ENST00000329397 MROH2AA6NES4 1674 aa22.51■■□□□ 1.19
PTP4A3-201ENST00000329397 UHRF1BP1LA0JNW5 1464 aa22.5■■□□□ 1.19
PTP4A3-201ENST00000329397 ADGRL1O94910 1474 aa22.5■■□□□ 1.19
PTP4A3-201ENST00000329397 NOS1P29475 1434 aa22.5■■□□□ 1.19
PTP4A3-201ENST00000329397 USP35Q9P2H5 1018 aa22.5■■□□□ 1.19
PTP4A3-201ENST00000329397 INO80Q9ULG1 1556 aaPredicted RBP22.49■■□□□ 1.19
PTP4A3-201ENST00000329397 NSD3Q9BZ95 1437 aa22.49■■□□□ 1.19
PTP4A3-201ENST00000329397 CENPJQ9HC77 1338 aaPredicted RBP22.49■■□□□ 1.19
PTP4A3-201ENST00000329397 MORC1Q86VD1 984 aa22.49■■□□□ 1.19
PTP4A3-201ENST00000329397 STAC3Q96MF2 364 aa22.49■■□□□ 1.19
PTP4A3-201ENST00000329397 MROH1Q8NDA8 1641 aa22.48■■□□□ 1.19
PTP4A3-201ENST00000329397 VWDEQ8N2E2 1590 aa22.47■■□□□ 1.19
PTP4A3-201ENST00000329397 KIF1BO60333 1816 aa22.47■■□□□ 1.19
PTP4A3-201ENST00000329397 SEC24BO95487 1268 aa22.46■■□□□ 1.19
PTP4A3-201ENST00000329397 GGT6Q6P531 493 aa22.45■■□□□ 1.19
PTP4A3-201ENST00000329397 KIAA1210Q9ULL0 1709 aa22.45■■□□□ 1.18
PTP4A3-201ENST00000329397 CLUAP1Q96AJ1 413 aa22.44■■□□□ 1.18
PTP4A3-201ENST00000329397 PPRC1Q5VV67 1664 aaKnown RBP22.43■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms