RNA–Protein interactions for RNA: ENST00000321356.8

CLK1-201, Transcript of CDC like kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK1, Length 1,888 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-201ENST00000321356 KIAA1210Q9ULL0 1709 aa11.56□□□□□ -0.56
CLK1-201ENST00000321356 MS4A1P11836 297 aa11.55□□□□□ -0.56
CLK1-201ENST00000321356 STAC3Q96MF2 364 aa11.55□□□□□ -0.56
CLK1-201ENST00000321356 SALL2Q9Y467 1007 aaPredicted RBP11.55□□□□□ -0.56
CLK1-201ENST00000321356 MYOM1P52179 1685 aa11.55□□□□□ -0.56
CLK1-201ENST00000321356 VWDEQ8N2E2 1590 aa11.55□□□□□ -0.56
CLK1-201ENST00000321356 SCAF11Q99590 1463 aaKnown RBP11.54□□□□□ -0.56
CLK1-201ENST00000321356 INO80Q9ULG1 1556 aaPredicted RBP11.53□□□□□ -0.56
CLK1-201ENST00000321356 NPC1L1Q9UHC9 1359 aa11.53□□□□□ -0.56
CLK1-201ENST00000321356 AMER1Q5JTC6 1135 aaPredicted RBP11.53□□□□□ -0.56
CLK1-201ENST00000321356 ASXL1Q8IXJ9 1541 aa11.52□□□□□ -0.56
CLK1-201ENST00000321356 PIK3C2GO75747 1445 aa11.52□□□□□ -0.56
CLK1-201ENST00000321356 PPP2R1AP30153 589 aa11.51□□□□□ -0.57
CLK1-201ENST00000321356 BACH2Q9BYV9 841 aa11.51□□□□□ -0.57
CLK1-201ENST00000321356 ADAMTS8Q9UP79 889 aa11.51□□□□□ -0.57
CLK1-201ENST00000321356 SPAG9O60271 1321 aaKnown RBP11.51□□□□□ -0.57
CLK1-201ENST00000321356 ZNF521Q96K83 1311 aa11.51□□□□□ -0.57
CLK1-201ENST00000321356 PDE4AP27815 886 aa11.51□□□□□ -0.57
CLK1-201ENST00000321356 CDCA8Q53HL2 280 aa11.51□□□□□ -0.57
CLK1-201ENST00000321356 ZBTB47Q9UFB7 747 aaPredicted RBP11.51□□□□□ -0.57
CLK1-201ENST00000321356 ABCA9Q8IUA7 1624 aa11.5□□□□□ -0.57
CLK1-201ENST00000321356 KDM5AP29375 1690 aaKnown RBP11.5□□□□□ -0.57
CLK1-201ENST00000321356 PLEKHH1Q9ULM0 1364 aa11.5□□□□□ -0.57
CLK1-201ENST00000321356 DEKP35659 375 aaKnown RBP11.5□□□□□ -0.57
CLK1-201ENST00000321356 KNSTRNQ9Y448 316 aa11.5□□□□□ -0.57
CLK1-201ENST00000321356 ATP7AQ04656 1500 aa11.5□□□□□ -0.57
CLK1-201ENST00000321356 PLIN1O60240 522 aa11.49□□□□□ -0.57
CLK1-201ENST00000321356 CRBNQ96SW2 442 aa11.49□□□□□ -0.57
CLK1-201ENST00000321356 MROH1Q8NDA8 1641 aa11.49□□□□□ -0.57
CLK1-201ENST00000321356 MYOM2P54296 1465 aa11.49□□□□□ -0.57
CLK1-201ENST00000321356 IFT172Q9UG01 1749 aa11.48□□□□□ -0.57
CLK1-201ENST00000321356 DUSP27Q5VZP5 1158 aa11.48□□□□□ -0.57
CLK1-201ENST00000321356 MAP3K4Q9Y6R4 1608 aa11.48□□□□□ -0.57
CLK1-201ENST00000321356 EIF3AQ14152 1382 aaKnown RBP11.48□□□□□ -0.57
CLK1-201ENST00000321356 ABCA6Q8N139 1617 aa11.47□□□□□ -0.57
CLK1-201ENST00000321356 KDM2BQ8NHM5 1336 aa11.47□□□□□ -0.57
CLK1-201ENST00000321356 NBR1Q14596 966 aa11.46□□□□□ -0.57
CLK1-201ENST00000321356 AFAP1Q8N556 730 aa11.46□□□□□ -0.57
CLK1-201ENST00000321356 WDR43Q15061 677 aaKnown RBP eCLIP11.46□□□□□ -0.58
CLK1-201ENST00000321356 KANK1Q14678 1352 aa11.46□□□□□ -0.58
CLK1-201ENST00000321356 MYO3AQ8NEV4 1616 aa11.46□□□□□ -0.58
CLK1-201ENST00000321356 ERVK-7P63135 1459 aa11.45□□□□□ -0.58
CLK1-201ENST00000321356 KIF1BO60333 1816 aa11.44□□□□□ -0.58
CLK1-201ENST00000321356 C20orf194Q5TEA3 1177 aa11.44□□□□□ -0.58
CLK1-201ENST00000321356 TRMT2AQ8IZ69 625 aaKnown RBP11.44□□□□□ -0.58
CLK1-201ENST00000321356 EFCAB6Q5THR3 1501 aa11.44□□□□□ -0.58
CLK1-201ENST00000321356 FANCAO15360 1455 aa11.44□□□□□ -0.58
CLK1-201ENST00000321356 NRXN1Q9ULB1 1477 aa11.44□□□□□ -0.58
CLK1-201ENST00000321356 GOLGA2Q08379 1002 aa11.44□□□□□ -0.58
CLK1-201ENST00000321356 SLC24A1O60721 1099 aa11.43□□□□□ -0.58
CLK1-201ENST00000321356 SLFN5Q08AF3 891 aa11.43□□□□□ -0.58
CLK1-201ENST00000321356 SBNO2Q9Y2G9 1366 aa11.43□□□□□ -0.58
CLK1-201ENST00000321356 UGGT1Q9NYU2 1555 aa11.42□□□□□ -0.58
CLK1-201ENST00000321356 MROH2AA6NES4 1674 aa11.42□□□□□ -0.58
CLK1-201ENST00000321356 CENPQQ7L2Z9 268 aaPredicted RBP11.42□□□□□ -0.58
CLK1-201ENST00000321356 NPM2Q86SE8 214 aaKnown RBP11.42□□□□□ -0.58
CLK1-201ENST00000321356 LMTK2Q8IWU2 1503 aa11.42□□□□□ -0.58
CLK1-201ENST00000321356 PPRC1Q5VV67 1664 aaKnown RBP11.41□□□□□ -0.58
CLK1-201ENST00000321356 SETBP1Q9Y6X0 1596 aa11.41□□□□□ -0.58
CLK1-201ENST00000321356 RTL5Q5HYW3 569 aaPredicted RBP11.4□□□□□ -0.58
CLK1-201ENST00000321356 ADGRL1O94910 1474 aa11.4□□□□□ -0.58
CLK1-201ENST00000321356 KIDINS220Q9ULH0 1771 aa11.4□□□□□ -0.58
CLK1-201ENST00000321356 NKTRP30414 1462 aaKnown RBP11.4□□□□□ -0.58
CLK1-201ENST00000321356 NGEFQ8N5V2 710 aa11.4□□□□□ -0.59
CLK1-201ENST00000321356 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.4□□□□□ -0.59
CLK1-201ENST00000321356 ADGRB3O60242 1522 aa11.39□□□□□ -0.59
CLK1-201ENST00000321356 ZC3H13Q5T200 1668 aaKnown RBP11.39□□□□□ -0.59
CLK1-201ENST00000321356 KIF3BO15066 747 aa11.39□□□□□ -0.59
CLK1-201ENST00000321356 SKAP1Q86WV1 359 aa11.39□□□□□ -0.59
CLK1-201ENST00000321356 ADGRF5Q8IZF2 1346 aa11.39□□□□□ -0.59
CLK1-201ENST00000321356 CFAP70Q5T0N1 1121 aa11.38□□□□□ -0.59
CLK1-201ENST00000321356 USP35Q9P2H5 1018 aa11.38□□□□□ -0.59
CLK1-201ENST00000321356 DDRGK1Q96HY6 314 aa11.38□□□□□ -0.59
CLK1-201ENST00000321356 CARD14Q9BXL6 1004 aa11.38□□□□□ -0.59
CLK1-201ENST00000321356 POLR3AO14802 1390 aaPredicted RBP11.38□□□□□ -0.59
CLK1-201ENST00000321356 SHPRHQ149N8 1683 aa11.37□□□□□ -0.59
CLK1-201ENST00000321356 E9PSI1 815 aa11.36□□□□□ -0.59
CLK1-201ENST00000321356 APAF1O14727 1248 aa11.36□□□□□ -0.59
CLK1-201ENST00000321356 CCDC146Q8IYE0 955 aa11.36□□□□□ -0.59
CLK1-201ENST00000321356 SPINK5Q9NQ38 1064 aaPredicted RBP11.36□□□□□ -0.59
CLK1-201ENST00000321356 PPLO60437 1756 aa11.36□□□□□ -0.59
CLK1-201ENST00000321356 USP32Q8NFA0 1604 aa11.36□□□□□ -0.59
CLK1-201ENST00000321356 PPM1GO15355 546 aaPredicted RBP11.35□□□□□ -0.59
CLK1-201ENST00000321356 VIRMAQ69YN4 1812 aaKnown RBP11.34□□□□□ -0.59
CLK1-201ENST00000321356 C8orf34Q49A92 452 aa11.34□□□□□ -0.59
CLK1-201ENST00000321356 QRICH2Q9H0J4 1663 aa11.34□□□□□ -0.59
CLK1-201ENST00000321356 ADGRB1O14514 1584 aa11.34□□□□□ -0.59
CLK1-201ENST00000321356 ZNF518AQ6AHZ1 1483 aa11.34□□□□□ -0.59
CLK1-201ENST00000321356 NINLQ9Y2I6 1382 aa11.34□□□□□ -0.59
CLK1-201ENST00000321356 FAM161AQ3B820 660 aa11.34□□□□□ -0.59
CLK1-201ENST00000321356 NOS1P29475 1434 aa11.33□□□□□ -0.59
CLK1-201ENST00000321356 ASXL2Q76L83 1435 aa11.33□□□□□ -0.6
CLK1-201ENST00000321356 LAS1LQ9Y4W2 734 aaKnown RBP11.33□□□□□ -0.6
CLK1-201ENST00000321356 DMRT2Q9Y5R5 561 aa11.33□□□□□ -0.6
CLK1-201ENST00000321356 FRMPD1Q5SYB0 1578 aa11.32□□□□□ -0.6
CLK1-201ENST00000321356 NEFMP07197 916 aa11.32□□□□□ -0.6
CLK1-201ENST00000321356 IQSEC2Q5JU85 1478 aa11.32□□□□□ -0.6
CLK1-201ENST00000321356 CENPJQ9HC77 1338 aaPredicted RBP11.32□□□□□ -0.6
CLK1-201ENST00000321356 BCAR3O75815 825 aa11.32□□□□□ -0.6
CLK1-201ENST00000321356 PDE3AQ14432 1141 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms