RNA–Protein interactions for RNA: ENST00000319854.7

SHROOM1-201, Transcript of shroom family member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHROOM1, Length 3,190 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-201ENST00000319854 TRAK1Q9UPV9 953 aa20.58■□□□□ 0.89
SHROOM1-201ENST00000319854 CD109Q6YHK3 1445 aa20.57■□□□□ 0.88
SHROOM1-201ENST00000319854 WASHC2CQ9Y4E1 1318 aa20.57■□□□□ 0.88
SHROOM1-201ENST00000319854 CYB5RLQ6IPT4 315 aa20.57■□□□□ 0.88
SHROOM1-201ENST00000319854 LRPPRCP42704 1394 aaKnown RBP20.57■□□□□ 0.88
SHROOM1-201ENST00000319854 ADAMTS8Q9UP79 889 aa20.56■□□□□ 0.88
SHROOM1-201ENST00000319854 CLTCL1P53675 1640 aa20.56■□□□□ 0.88
SHROOM1-201ENST00000319854 PLIN1O60240 522 aa20.56■□□□□ 0.88
SHROOM1-201ENST00000319854 TNNT2P45379 298 aaPredicted RBP20.56■□□□□ 0.88
SHROOM1-201ENST00000319854 NEFMP07197 916 aa20.54■□□□□ 0.88
SHROOM1-201ENST00000319854 SAFB2Q14151 953 aaKnown RBP eCLIP20.54■□□□□ 0.88
SHROOM1-201ENST00000319854 CCDC146Q8IYE0 955 aa20.53■□□□□ 0.88
SHROOM1-201ENST00000319854 RCAN3Q9UKA8 241 aa20.53■□□□□ 0.88
SHROOM1-201ENST00000319854 WDR43Q15061 677 aaKnown RBP eCLIP20.52■□□□□ 0.88
SHROOM1-201ENST00000319854 TRPM2O94759 1503 aa20.52■□□□□ 0.88
SHROOM1-201ENST00000319854 EIF2AK4Q9P2K8 1649 aaKnown RBP20.52■□□□□ 0.88
SHROOM1-201ENST00000319854 PPP2R1AP30153 589 aa20.52■□□□□ 0.87
SHROOM1-201ENST00000319854 PTPRTO14522 1441 aa20.52■□□□□ 0.87
SHROOM1-201ENST00000319854 ABCA9Q8IUA7 1624 aa20.51■□□□□ 0.87
SHROOM1-201ENST00000319854 EXOC6Q8TAG9 804 aa20.5■□□□□ 0.87
SHROOM1-201ENST00000319854 CDCA8Q53HL2 280 aa20.5■□□□□ 0.87
SHROOM1-201ENST00000319854 SCAF11Q99590 1463 aaKnown RBP20.49■□□□□ 0.87
SHROOM1-201ENST00000319854 SPHKAPQ2M3C7 1700 aa20.49■□□□□ 0.87
SHROOM1-201ENST00000319854 AMER1Q5JTC6 1135 aaPredicted RBP20.49■□□□□ 0.87
SHROOM1-201ENST00000319854 MADDQ8WXG6 1647 aa20.49■□□□□ 0.87
SHROOM1-201ENST00000319854 INO80Q9ULG1 1556 aaPredicted RBP20.48■□□□□ 0.87
SHROOM1-201ENST00000319854 ARAP3Q8WWN8 1544 aa20.48■□□□□ 0.87
SHROOM1-201ENST00000319854 NOS1P29475 1434 aa20.47■□□□□ 0.87
SHROOM1-201ENST00000319854 RRP1P56182 461 aaKnown RBP20.47■□□□□ 0.87
SHROOM1-201ENST00000319854 ZNF518AQ6AHZ1 1483 aa20.47■□□□□ 0.87
SHROOM1-201ENST00000319854 PDE4AP27815 886 aa20.45■□□□□ 0.86
SHROOM1-201ENST00000319854 EIF3AQ14152 1382 aaKnown RBP20.45■□□□□ 0.86
SHROOM1-201ENST00000319854 TET3O43151 1660 aa20.45■□□□□ 0.86
SHROOM1-201ENST00000319854 STK26Q9P289 416 aa20.44■□□□□ 0.86
SHROOM1-201ENST00000319854 KIDINS220Q9ULH0 1771 aa20.43■□□□□ 0.86
SHROOM1-201ENST00000319854 CARD14Q9BXL6 1004 aa20.42■□□□□ 0.86
SHROOM1-201ENST00000319854 SLC12A5Q9H2X9 1139 aa20.42■□□□□ 0.86
SHROOM1-201ENST00000319854 BRPF3Q9ULD4 1205 aa20.42■□□□□ 0.86
SHROOM1-201ENST00000319854 NPATQ14207 1427 aa20.4■□□□□ 0.86
SHROOM1-201ENST00000319854 DEPDC5O75140 1603 aa20.4■□□□□ 0.86
SHROOM1-201ENST00000319854 MROH1Q8NDA8 1641 aa20.4■□□□□ 0.86
SHROOM1-201ENST00000319854 CEP152O94986 1710 aa20.4■□□□□ 0.86
SHROOM1-201ENST00000319854 BACH2Q9BYV9 841 aa20.4■□□□□ 0.86
SHROOM1-201ENST00000319854 SKAP1Q86WV1 359 aa20.39■□□□□ 0.85
SHROOM1-201ENST00000319854 CENPJQ9HC77 1338 aaPredicted RBP20.39■□□□□ 0.85
SHROOM1-201ENST00000319854 POGZQ7Z3K3 1410 aa20.39■□□□□ 0.85
SHROOM1-201ENST00000319854 NEUROD2Q15784 382 aa20.39■□□□□ 0.85
SHROOM1-201ENST00000319854 USP35Q9P2H5 1018 aa20.39■□□□□ 0.85
SHROOM1-201ENST00000319854 RNF17Q9BXT8 1623 aaKnown RBP20.39■□□□□ 0.85
SHROOM1-201ENST00000319854 STAC3Q96MF2 364 aa20.38■□□□□ 0.85
SHROOM1-201ENST00000319854 LAMC1P11047 1609 aa20.38■□□□□ 0.85
SHROOM1-201ENST00000319854 PPRC1Q5VV67 1664 aaKnown RBP20.38■□□□□ 0.85
SHROOM1-201ENST00000319854 TCERG1O14776 1098 aaKnown RBP20.38■□□□□ 0.85
SHROOM1-201ENST00000319854 MLECQ14165 292 aa20.37■□□□□ 0.85
SHROOM1-201ENST00000319854 APAF1O14727 1248 aa20.37■□□□□ 0.85
SHROOM1-201ENST00000319854 EFCAB6Q5THR3 1501 aa20.36■□□□□ 0.85
SHROOM1-201ENST00000319854 PDE3BQ13370 1112 aa20.36■□□□□ 0.85
SHROOM1-201ENST00000319854 VWDEQ8N2E2 1590 aa20.35■□□□□ 0.85
SHROOM1-201ENST00000319854 C20orf194Q5TEA3 1177 aa20.35■□□□□ 0.85
SHROOM1-201ENST00000319854 FAM69CQ0P6D2 419 aa20.34■□□□□ 0.85
SHROOM1-201ENST00000319854 IDI1Q13907 227 aa20.34■□□□□ 0.85
SHROOM1-201ENST00000319854 PLEKHH1Q9ULM0 1364 aa20.34■□□□□ 0.85
SHROOM1-201ENST00000319854 IQGAP1P46940 1657 aa20.34■□□□□ 0.85
SHROOM1-201ENST00000319854 FBXO31Q5XUX0 539 aaPredicted RBP20.33■□□□□ 0.85
SHROOM1-201ENST00000319854 CRBNQ96SW2 442 aa20.33■□□□□ 0.84
SHROOM1-201ENST00000319854 ABCA6Q8N139 1617 aa20.32■□□□□ 0.84
SHROOM1-201ENST00000319854 CABP2Q9NPB3 220 aa20.32■□□□□ 0.84
SHROOM1-201ENST00000319854 ERVK-7P63135 1459 aa20.32■□□□□ 0.84
SHROOM1-201ENST00000319854 MORC1Q86VD1 984 aa20.32■□□□□ 0.84
SHROOM1-201ENST00000319854 RRP7AQ9Y3A4 280 aaKnown RBP20.32■□□□□ 0.84
SHROOM1-201ENST00000319854 MROH2AA6NES4 1674 aa20.31■□□□□ 0.84
SHROOM1-201ENST00000319854 PPM1GO15355 546 aaPredicted RBP20.31■□□□□ 0.84
SHROOM1-201ENST00000319854 C14orf93Q9H972 538 aaKnown RBP20.31■□□□□ 0.84
SHROOM1-201ENST00000319854 ASXL1Q8IXJ9 1541 aa20.31■□□□□ 0.84
SHROOM1-201ENST00000319854 YEATS2Q9ULM3 1422 aa20.3■□□□□ 0.84
SHROOM1-201ENST00000319854 STAG3Q9UJ98 1225 aa20.3■□□□□ 0.84
SHROOM1-201ENST00000319854 KIF1BO60333 1816 aa20.3■□□□□ 0.84
SHROOM1-201ENST00000319854 MAP3K4Q9Y6R4 1608 aa20.3■□□□□ 0.84
SHROOM1-201ENST00000319854 SLC4A3P48751 1232 aa20.3■□□□□ 0.84
SHROOM1-201ENST00000319854 SPINK5Q9NQ38 1064 aaPredicted RBP20.29■□□□□ 0.84
SHROOM1-201ENST00000319854 BLMP54132 1417 aaPredicted RBP20.29■□□□□ 0.84
SHROOM1-201ENST00000319854 FRMPD1Q5SYB0 1578 aa20.29■□□□□ 0.84
SHROOM1-201ENST00000319854 GOLGA2Q08379 1002 aa20.28■□□□□ 0.84
SHROOM1-201ENST00000319854 GSE1Q14687 1217 aa20.28■□□□□ 0.84
SHROOM1-201ENST00000319854 UBE2Q2Q8WVN8 375 aa20.27■□□□□ 0.84
SHROOM1-201ENST00000319854 DMRT2Q9Y5R5 561 aa20.26■□□□□ 0.83
SHROOM1-201ENST00000319854 MLH3Q9UHC1 1453 aa20.26■□□□□ 0.83
SHROOM1-201ENST00000319854 NSD3Q9BZ95 1437 aa20.26■□□□□ 0.83
SHROOM1-201ENST00000319854 SRPK2P78362 688 aaKnown RBP20.26■□□□□ 0.83
SHROOM1-201ENST00000319854 VGFO15240 615 aaPredicted RBP20.26■□□□□ 0.83
SHROOM1-201ENST00000319854 HECW2Q9P2P5 1572 aa20.25■□□□□ 0.83
SHROOM1-201ENST00000319854 MS4A1P11836 297 aa20.25■□□□□ 0.83
SHROOM1-201ENST00000319854 NFKBIBQ15653 356 aa20.25■□□□□ 0.83
SHROOM1-201ENST00000319854 DUSP27Q5VZP5 1158 aa20.25■□□□□ 0.83
SHROOM1-201ENST00000319854 MINK1Q8N4C8 1332 aaPredicted RBP20.25■□□□□ 0.83
SHROOM1-201ENST00000319854 MYOM2P54296 1465 aa20.24■□□□□ 0.83
SHROOM1-201ENST00000319854 FRAT1Q92837 279 aaPredicted RBP20.24■□□□□ 0.83
SHROOM1-201ENST00000319854 SYNMO15061 1565 aa20.24■□□□□ 0.83
SHROOM1-201ENST00000319854 EIF5BO60841 1220 aaKnown RBP20.23■□□□□ 0.83
SHROOM1-201ENST00000319854 ABCC3O15438 1527 aa20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms