RNA–Protein interactions for RNA: ENST00000313863.10

MKS1-201, Transcript of Meckel syndrome, type 1, humanhuman

TSL 5 BASIC

Gene MKS1, Length 2,091 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1-201ENST00000313863 NPC1L1Q9UHC9 1359 aa18.12■□□□□ 0.49
MKS1-201ENST00000313863 EIF3AQ14152 1382 aaKnown RBP18.11■□□□□ 0.49
MKS1-201ENST00000313863 KIAA1210Q9ULL0 1709 aa18.11■□□□□ 0.49
MKS1-201ENST00000313863 KDM2BQ8NHM5 1336 aa18.11■□□□□ 0.49
MKS1-201ENST00000313863 TRPM2O94759 1503 aa18.11■□□□□ 0.49
MKS1-201ENST00000313863 SLC24A1O60721 1099 aa18.11■□□□□ 0.49
MKS1-201ENST00000313863 PPP2R1AP30153 589 aa18.11■□□□□ 0.49
MKS1-201ENST00000313863 SCAF11Q99590 1463 aaKnown RBP18.11■□□□□ 0.49
MKS1-201ENST00000313863 PLCH2O75038 1416 aa18.1■□□□□ 0.49
MKS1-201ENST00000313863 GOLGA2Q08379 1002 aa18.1■□□□□ 0.49
MKS1-201ENST00000313863 PRKCSHP14314 528 aaPredicted RBP18.1■□□□□ 0.49
MKS1-201ENST00000313863 DUSP27Q5VZP5 1158 aa18.08■□□□□ 0.49
MKS1-201ENST00000313863 DAXXQ9UER7 740 aaPredicted RBP18.08■□□□□ 0.49
MKS1-201ENST00000313863 LAS1LQ9Y4W2 734 aaKnown RBP18.08■□□□□ 0.49
MKS1-201ENST00000313863 KDM5AP29375 1690 aaKnown RBP18.08■□□□□ 0.49
MKS1-201ENST00000313863 ZNF521Q96K83 1311 aa18.08■□□□□ 0.48
MKS1-201ENST00000313863 ABCC1P33527 1531 aa18.07■□□□□ 0.48
MKS1-201ENST00000313863 NGEFQ8N5V2 710 aa18.07■□□□□ 0.48
MKS1-201ENST00000313863 AMER1Q5JTC6 1135 aaPredicted RBP18.07■□□□□ 0.48
MKS1-201ENST00000313863 PLEKHH1Q9ULM0 1364 aa18.06■□□□□ 0.48
MKS1-201ENST00000313863 EFCAB2Q5VUJ9 269 aa18.06■□□□□ 0.48
MKS1-201ENST00000313863 MYOM1P52179 1685 aa18.06■□□□□ 0.48
MKS1-201ENST00000313863 NEURL4Q96JN8 1562 aa18.06■□□□□ 0.48
MKS1-201ENST00000313863 FAM161AQ3B820 660 aa18.05■□□□□ 0.48
MKS1-201ENST00000313863 ARAP3Q8WWN8 1544 aa18.05■□□□□ 0.48
MKS1-201ENST00000313863 RTEL1-TNFRSF6BF6WH68 1400 aa18.05■□□□□ 0.48
MKS1-201ENST00000313863 UHRF1BP1LA0JNW5 1464 aa18.04■□□□□ 0.48
MKS1-201ENST00000313863 TET3O43151 1660 aa18.04■□□□□ 0.48
MKS1-201ENST00000313863 PTPRTO14522 1441 aa18.03■□□□□ 0.48
MKS1-201ENST00000313863 DEPDC5O75140 1603 aa18.03■□□□□ 0.48
MKS1-201ENST00000313863 SLFN5Q08AF3 891 aa18.02■□□□□ 0.48
MKS1-201ENST00000313863 C20orf194Q5TEA3 1177 aa18.02■□□□□ 0.48
MKS1-201ENST00000313863 VIRMAQ69YN4 1812 aaKnown RBP18.02■□□□□ 0.47
MKS1-201ENST00000313863 CLTCL1P53675 1640 aa18.01■□□□□ 0.47
MKS1-201ENST00000313863 ZCCHC11Q5TAX3 1644 aaKnown RBP18.01■□□□□ 0.47
MKS1-201ENST00000313863 NKTRP30414 1462 aaKnown RBP18.01■□□□□ 0.47
MKS1-201ENST00000313863 NINLQ9Y2I6 1382 aa18■□□□□ 0.47
MKS1-201ENST00000313863 TRMT2AQ8IZ69 625 aaKnown RBP18■□□□□ 0.47
MKS1-201ENST00000313863 KANK1Q14678 1352 aa17.98■□□□□ 0.47
MKS1-201ENST00000313863 E9PSI1 815 aa17.97■□□□□ 0.47
MKS1-201ENST00000313863 TRAPPC8Q9Y2L5 1435 aa17.97■□□□□ 0.47
MKS1-201ENST00000313863 SPAG9O60271 1321 aaKnown RBP17.97■□□□□ 0.47
MKS1-201ENST00000313863 ZFYVE16Q7Z3T8 1539 aa17.97■□□□□ 0.47
MKS1-201ENST00000313863 ERCC6L2Q5T890 1561 aa17.96■□□□□ 0.47
MKS1-201ENST00000313863 C8orf34Q49A92 452 aa17.95■□□□□ 0.46
MKS1-201ENST00000313863 VWDEQ8N2E2 1590 aa17.95■□□□□ 0.46
MKS1-201ENST00000313863 KIF1BO60333 1816 aa17.94■□□□□ 0.46
MKS1-201ENST00000313863 MYOM2P54296 1465 aa17.94■□□□□ 0.46
MKS1-201ENST00000313863 GSE1Q14687 1217 aa17.94■□□□□ 0.46
MKS1-201ENST00000313863 MAP3K4Q9Y6R4 1608 aa17.93■□□□□ 0.46
MKS1-201ENST00000313863 CGNL1Q0VF96 1302 aa17.93■□□□□ 0.46
MKS1-201ENST00000313863 NFKBIBQ15653 356 aa17.93■□□□□ 0.46
MKS1-201ENST00000313863 PDE3AQ14432 1141 aa17.92■□□□□ 0.46
MKS1-201ENST00000313863 SKAP1Q86WV1 359 aa17.92■□□□□ 0.46
MKS1-201ENST00000313863 MYO3AQ8NEV4 1616 aa17.92■□□□□ 0.46
MKS1-201ENST00000313863 AAMPQ13685 434 aa17.91■□□□□ 0.46
MKS1-201ENST00000313863 ABCA6Q8N139 1617 aa17.9■□□□□ 0.46
MKS1-201ENST00000313863 IFT172Q9UG01 1749 aa17.89■□□□□ 0.46
MKS1-201ENST00000313863 APAF1O14727 1248 aa17.89■□□□□ 0.45
MKS1-201ENST00000313863 INO80Q9ULG1 1556 aaPredicted RBP17.89■□□□□ 0.45
MKS1-201ENST00000313863 MAPK8IP3Q9UPT6 1336 aa17.89■□□□□ 0.45
MKS1-201ENST00000313863 ERVK-7P63135 1459 aa17.89■□□□□ 0.45
MKS1-201ENST00000313863 ATP7AQ04656 1500 aa17.88■□□□□ 0.45
MKS1-201ENST00000313863 CCDC146Q8IYE0 955 aa17.88■□□□□ 0.45
MKS1-201ENST00000313863 POLR3AO14802 1390 aaPredicted RBP17.88■□□□□ 0.45
MKS1-201ENST00000313863 SBNO2Q9Y2G9 1366 aa17.88■□□□□ 0.45
MKS1-201ENST00000313863 RGS3P49796 1198 aa17.87■□□□□ 0.45
MKS1-201ENST00000313863 ABCA9Q8IUA7 1624 aa17.86■□□□□ 0.45
MKS1-201ENST00000313863 CENPJQ9HC77 1338 aaPredicted RBP17.86■□□□□ 0.45
MKS1-201ENST00000313863 IL27Q8NEV9 243 aa17.84■□□□□ 0.45
MKS1-201ENST00000313863 ZMYM3Q14202 1370 aa17.84■□□□□ 0.45
MKS1-201ENST00000313863 CANXP27824 592 aaKnown RBP17.84■□□□□ 0.45
MKS1-201ENST00000313863 SETBP1Q9Y6X0 1596 aa17.84■□□□□ 0.45
MKS1-201ENST00000313863 BCAR3O75815 825 aa17.83■□□□□ 0.44
MKS1-201ENST00000313863 SLC4A3P48751 1232 aa17.83■□□□□ 0.44
MKS1-201ENST00000313863 BECN1Q14457 450 aa17.82■□□□□ 0.44
MKS1-201ENST00000313863 AFAP1Q8N556 730 aa17.82■□□□□ 0.44
MKS1-201ENST00000313863 CLUAP1Q96AJ1 413 aa17.82■□□□□ 0.44
MKS1-201ENST00000313863 SPINK5Q9NQ38 1064 aaPredicted RBP17.82■□□□□ 0.44
MKS1-201ENST00000313863 NRXN1Q9ULB1 1477 aa17.81■□□□□ 0.44
MKS1-201ENST00000313863 EFCAB6Q5THR3 1501 aa17.81■□□□□ 0.44
MKS1-201ENST00000313863 MROH1Q8NDA8 1641 aa17.8■□□□□ 0.44
MKS1-201ENST00000313863 USP32Q8NFA0 1604 aa17.8■□□□□ 0.44
MKS1-201ENST00000313863 SHPRHQ149N8 1683 aa17.8■□□□□ 0.44
MKS1-201ENST00000313863 PMFBP1Q8TBY8 1022 aa17.8■□□□□ 0.44
MKS1-201ENST00000313863 ANO8Q9HCE9 1232 aaPredicted RBP17.8■□□□□ 0.44
MKS1-201ENST00000313863 ZC3H13Q5T200 1668 aaKnown RBP17.8■□□□□ 0.44
MKS1-201ENST00000313863 CFAP70Q5T0N1 1121 aa17.79■□□□□ 0.44
MKS1-201ENST00000313863 WWC1Q8IX03 1113 aa17.79■□□□□ 0.44
MKS1-201ENST00000313863 FANCAO15360 1455 aa17.79■□□□□ 0.44
MKS1-201ENST00000313863 CARD14Q9BXL6 1004 aa17.78■□□□□ 0.44
MKS1-201ENST00000313863 LMTK2Q8IWU2 1503 aa17.78■□□□□ 0.44
MKS1-201ENST00000313863 NCBP3Q53F19 620 aaKnown RBP17.78■□□□□ 0.44
MKS1-201ENST00000313863 FRAT1Q92837 279 aaPredicted RBP17.78■□□□□ 0.44
MKS1-201ENST00000313863 KIF3BO15066 747 aa17.77■□□□□ 0.44
MKS1-201ENST00000313863 RUNDC1Q96C34 613 aa17.77■□□□□ 0.44
MKS1-201ENST00000313863 MROH2AA6NES4 1674 aa17.77■□□□□ 0.44
MKS1-201ENST00000313863 IGHDP01880 384 aa17.76■□□□□ 0.43
MKS1-201ENST00000313863 WDR63Q8IWG1 891 aa17.76■□□□□ 0.43
MKS1-201ENST00000313863 UPF2Q9HAU5 1272 aaKnown RBP17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms