RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 MICALCLQ6ZW33 695 aa9.27□□□□□ -0.93
LIMCH1-201ENST00000313860 ERCC4Q92889 916 aaPredicted RBP9.27□□□□□ -0.93
LIMCH1-201ENST00000313860 ZFYVE1Q9HBF4 777 aa9.26□□□□□ -0.93
LIMCH1-201ENST00000313860 RFC1P35251 1148 aaPredicted RBP9.26□□□□□ -0.93
LIMCH1-201ENST00000313860 SMARCE1Q969G3 411 aa9.26□□□□□ -0.93
LIMCH1-201ENST00000313860 PRDM10Q9NQV6 1147 aa9.26□□□□□ -0.93
LIMCH1-201ENST00000313860 ZCRB1Q8TBF4 217 aaKnown RBP9.26□□□□□ -0.93
LIMCH1-201ENST00000313860 IFT57Q9NWB7 429 aa9.26□□□□□ -0.93
LIMCH1-201ENST00000313860 KNSTRNQ9Y448 316 aa9.26□□□□□ -0.93
LIMCH1-201ENST00000313860 PDE1CQ14123 709 aaPredicted RBP9.25□□□□□ -0.93
LIMCH1-201ENST00000313860 LRRC43Q8N309 656 aa9.25□□□□□ -0.93
LIMCH1-201ENST00000313860 SUPT16HQ9Y5B9 1047 aaKnown RBP9.25□□□□□ -0.93
LIMCH1-201ENST00000313860 KIAA1211Q6ZU35 1233 aa9.25□□□□□ -0.93
LIMCH1-201ENST00000313860 SH3BGRP55822 239 aaPredicted RBP9.25□□□□□ -0.93
LIMCH1-201ENST00000313860 NEUROD2Q15784 382 aa9.25□□□□□ -0.93
LIMCH1-201ENST00000313860 ZBTB41Q5SVQ8 909 aa9.24□□□□□ -0.93
LIMCH1-201ENST00000313860 RBM33Q96EV2 1170 aaKnown RBP9.24□□□□□ -0.93
LIMCH1-201ENST00000313860 CSPP1Q1MSJ5 1256 aa9.24□□□□□ -0.93
LIMCH1-201ENST00000313860 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.24□□□□□ -0.93
LIMCH1-201ENST00000313860 GTF2A1P52655 376 aaPredicted RBP9.24□□□□□ -0.93
LIMCH1-201ENST00000313860 CCDC146Q8IYE0 955 aa9.24□□□□□ -0.93
LIMCH1-201ENST00000313860 WDR70Q9NW82 654 aa9.24□□□□□ -0.93
LIMCH1-201ENST00000313860 TCEAL9Q9UHQ7 104 aa9.24□□□□□ -0.93
LIMCH1-201ENST00000313860 LETM1O95202 739 aaPredicted RBP9.24□□□□□ -0.93
LIMCH1-201ENST00000313860 STAMBPO95630 424 aa9.24□□□□□ -0.93
LIMCH1-201ENST00000313860 TDO2P48775 406 aa9.23□□□□□ -0.93
LIMCH1-201ENST00000313860 SMC1AQ14683 1233 aaKnown RBP9.23□□□□□ -0.93
LIMCH1-201ENST00000313860 ZNF622Q969S3 477 aaKnown RBP eCLIP9.23□□□□□ -0.93
LIMCH1-201ENST00000313860 MORC4Q8TE76 937 aa9.23□□□□□ -0.93
LIMCH1-201ENST00000313860 SWAP70Q9UH65 585 aa9.23□□□□□ -0.93
LIMCH1-201ENST00000313860 MAP3K7CLP57077 242 aa9.22□□□□□ -0.93
LIMCH1-201ENST00000313860 GTPBP4Q9BZE4 634 aaKnown RBP9.22□□□□□ -0.93
LIMCH1-201ENST00000313860 FOSL2P15408 326 aa9.22□□□□□ -0.93
LIMCH1-201ENST00000313860 DBN1Q16643 649 aa9.22□□□□□ -0.93
LIMCH1-201ENST00000313860 GRIPAP1Q4V328 841 aa9.22□□□□□ -0.93
LIMCH1-201ENST00000313860 B4GALNT3Q6L9W6 998 aa9.22□□□□□ -0.93
LIMCH1-201ENST00000313860 MPHOSPH6Q99547 160 aaKnown RBP9.22□□□□□ -0.93
LIMCH1-201ENST00000313860 ESF1Q9H501 851 aaKnown RBP9.22□□□□□ -0.93
LIMCH1-201ENST00000313860 FAM114A2Q9NRY5 505 aa9.22□□□□□ -0.93
LIMCH1-201ENST00000313860 CCDC112Q8NEF3 446 aa9.22□□□□□ -0.93
LIMCH1-201ENST00000313860 NUP133Q8WUM0 1156 aa9.22□□□□□ -0.93
LIMCH1-201ENST00000313860 ARID3CA6NKF2 412 aa9.22□□□□□ -0.93
LIMCH1-201ENST00000313860 FAM43AQ8N2R8 423 aa9.22□□□□□ -0.93
LIMCH1-201ENST00000313860 ZFP91Q96JP5 570 aaPredicted RBP9.22□□□□□ -0.93
LIMCH1-201ENST00000313860 MAP2K1Q02750 393 aaPredicted RBP9.21□□□□□ -0.93
LIMCH1-201ENST00000313860 SLMAPQ14BN4 828 aa9.21□□□□□ -0.94
LIMCH1-201ENST00000313860 DIXDC1Q155Q3 683 aa9.21□□□□□ -0.94
LIMCH1-201ENST00000313860 PMFBP1Q8TBY8 1022 aa9.21□□□□□ -0.94
LIMCH1-201ENST00000313860 CPSF2Q9P2I0 782 aaKnown RBP9.21□□□□□ -0.94
LIMCH1-201ENST00000313860 WDR78Q5VTH9 848 aa9.2□□□□□ -0.94
LIMCH1-201ENST00000313860 RNF168Q8IYW5 571 aaPredicted RBP9.2□□□□□ -0.94
LIMCH1-201ENST00000313860 KIF3BO15066 747 aa9.2□□□□□ -0.94
LIMCH1-201ENST00000313860 MIPOL1Q8TD10 442 aa9.2□□□□□ -0.94
LIMCH1-201ENST00000313860 RPUSD2Q8IZ73 545 aaKnown RBP9.2□□□□□ -0.94
LIMCH1-201ENST00000313860 SMC2O95347 1197 aa9.2□□□□□ -0.94
LIMCH1-201ENST00000313860 SARNPP82979 210 aaKnown RBP9.2□□□□□ -0.94
LIMCH1-201ENST00000313860 TOMM22Q9NS69 142 aa9.2□□□□□ -0.94
LIMCH1-201ENST00000313860 CGNQ9P2M7 1197 aaKnown RBP9.2□□□□□ -0.94
LIMCH1-201ENST00000313860 CCDC174Q6PII3 467 aa9.2□□□□□ -0.94
LIMCH1-201ENST00000313860 PDILTQ8N807 584 aa9.2□□□□□ -0.94
LIMCH1-201ENST00000313860 GBP2P32456 591 aaPredicted RBP9.19□□□□□ -0.94
LIMCH1-201ENST00000313860 TRIM34Q9BYJ4 488 aa9.19□□□□□ -0.94
LIMCH1-201ENST00000313860 TPX2Q9ULW0 747 aaKnown RBP9.19□□□□□ -0.94
LIMCH1-201ENST00000313860 ZBTB12Q9Y330 459 aaPredicted RBP9.19□□□□□ -0.94
LIMCH1-201ENST00000313860 CEP120Q8N960 986 aa9.19□□□□□ -0.94
LIMCH1-201ENST00000313860 ERCC3P19447 782 aa9.19□□□□□ -0.94
LIMCH1-201ENST00000313860 MRE11P49959 708 aa9.19□□□□□ -0.94
LIMCH1-201ENST00000313860 GOLIM4O00461 696 aa9.19□□□□□ -0.94
LIMCH1-201ENST00000313860 MAFGO15525 162 aa9.19□□□□□ -0.94
LIMCH1-201ENST00000313860 SLC26A8Q96RN1 970 aa9.19□□□□□ -0.94
LIMCH1-201ENST00000313860 TRIM29Q14134 588 aa9.18□□□□□ -0.94
LIMCH1-201ENST00000313860 RNF187Q5TA31 235 aaPredicted RBP9.18□□□□□ -0.94
LIMCH1-201ENST00000313860 RAD21O60216 631 aa9.18□□□□□ -0.94
LIMCH1-201ENST00000313860 NAA25Q14CX7 972 aa9.18□□□□□ -0.94
LIMCH1-201ENST00000313860 APBB1IPQ7Z5R6 666 aaPredicted RBP9.18□□□□□ -0.94
LIMCH1-201ENST00000313860 UBE4AQ14139 1066 aa9.18□□□□□ -0.94
LIMCH1-201ENST00000313860 TRIM55Q9BYV6 548 aa9.18□□□□□ -0.94
LIMCH1-201ENST00000313860 CCDC39Q9UFE4 941 aa9.18□□□□□ -0.94
LIMCH1-201ENST00000313860 ERLIN2O94905 339 aa9.17□□□□□ -0.94
LIMCH1-201ENST00000313860 TRIM35Q9UPQ4 493 aa9.17□□□□□ -0.94
LIMCH1-201ENST00000313860 H3BQV1 296 aa9.17□□□□□ -0.94
LIMCH1-201ENST00000313860 IFFO2Q5TF58 517 aa9.17□□□□□ -0.94
LIMCH1-201ENST00000313860 C10orf67Q8IYJ2 551 aa9.17□□□□□ -0.94
LIMCH1-201ENST00000313860 ANKRD20A12PQ8NF67 263 aa9.17□□□□□ -0.94
LIMCH1-201ENST00000313860 ATICP31939 592 aa9.16□□□□□ -0.94
LIMCH1-201ENST00000313860 AKAP17AQ02040 695 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-201ENST00000313860 CCDC113Q9H0I3 377 aa9.16□□□□□ -0.94
LIMCH1-201ENST00000313860 ZNHIT6Q9NWK9 470 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-201ENST00000313860 TTC16Q8NEE8 873 aa9.16□□□□□ -0.94
LIMCH1-201ENST00000313860 ALS2CR12Q96Q35 445 aa9.16□□□□□ -0.94
LIMCH1-201ENST00000313860 BTN2A1Q7KYR7 527 aa9.16□□□□□ -0.94
LIMCH1-201ENST00000313860 DACT3Q96B18 629 aaPredicted RBP9.16□□□□□ -0.94
LIMCH1-201ENST00000313860 KIF16BQ96L93 1317 aa9.15□□□□□ -0.94
LIMCH1-201ENST00000313860 SETDB1Q15047 1291 aa9.15□□□□□ -0.94
LIMCH1-201ENST00000313860 ZHX1Q9UKY1 873 aaPredicted RBP9.15□□□□□ -0.94
LIMCH1-201ENST00000313860 OFD1O75665 1012 aa9.15□□□□□ -0.94
LIMCH1-201ENST00000313860 CTR9Q6PD62 1173 aa9.15□□□□□ -0.94
LIMCH1-201ENST00000313860 CEP57Q86XR8 500 aa9.15□□□□□ -0.94
LIMCH1-201ENST00000313860 PDCD7Q8N8D1 485 aaKnown RBP9.15□□□□□ -0.94
LIMCH1-201ENST00000313860 PPFIBP2Q8ND30 876 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms