RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 BAZ1BQ9UIG0 1483 aaKnown RBP16.83■□□□□ 0.28
CSPG4-201ENST00000308508 MPHOSPH9Q99550 1183 aa16.82■□□□□ 0.28
CSPG4-201ENST00000308508 HMGN5P82970 282 aaKnown RBP16.82■□□□□ 0.28
CSPG4-201ENST00000308508 ANO2Q9NQ90 1003 aa16.82■□□□□ 0.28
CSPG4-201ENST00000308508 CCDC73Q6ZRK6 1079 aa16.82■□□□□ 0.28
CSPG4-201ENST00000308508 ROCK1Q13464 1354 aa16.82■□□□□ 0.28
CSPG4-201ENST00000308508 CCP110O43303 1012 aa16.82■□□□□ 0.28
CSPG4-201ENST00000308508 WWC1Q8IX03 1113 aa16.81■□□□□ 0.28
CSPG4-201ENST00000308508 AMOTL1Q8IY63 956 aa16.81■□□□□ 0.28
CSPG4-201ENST00000308508 CAGE1Q8TC20 777 aa16.81■□□□□ 0.28
CSPG4-201ENST00000308508 LETM1O95202 739 aaPredicted RBP16.81■□□□□ 0.28
CSPG4-201ENST00000308508 CRBNQ96SW2 442 aa16.81■□□□□ 0.28
CSPG4-201ENST00000308508 FOXD1Q16676 465 aa16.81■□□□□ 0.28
CSPG4-201ENST00000308508 CT47A1Q5JQC4 288 aaPredicted RBP16.8■□□□□ 0.28
CSPG4-201ENST00000308508 FMN1Q68DA7 1419 aa16.8■□□□□ 0.28
CSPG4-201ENST00000308508 SMC3Q9UQE7 1217 aa16.8■□□□□ 0.28
CSPG4-201ENST00000308508 ODF2Q5BJF6 829 aa16.8■□□□□ 0.28
CSPG4-201ENST00000308508 DDX19BQ9UMR2 479 aa16.8■□□□□ 0.28
CSPG4-201ENST00000308508 OLFM4Q6UX06 510 aa16.8■□□□□ 0.28
CSPG4-201ENST00000308508 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.79■□□□□ 0.28
CSPG4-201ENST00000308508 INTS3Q68E01 1043 aaKnown RBP16.78■□□□□ 0.28
CSPG4-201ENST00000308508 EXOC6Q8TAG9 804 aa16.78■□□□□ 0.28
CSPG4-201ENST00000308508 NUP155O75694 1391 aa16.78■□□□□ 0.28
CSPG4-201ENST00000308508 TRDNQ13061 729 aa16.77■□□□□ 0.28
CSPG4-201ENST00000308508 VPS37CA5D8V6 355 aaPredicted RBP16.77■□□□□ 0.28
CSPG4-201ENST00000308508 NFKBIBQ15653 356 aa16.77■□□□□ 0.27
CSPG4-201ENST00000308508 ANKRD30AQ9BXX3 1397 aa16.76■□□□□ 0.27
CSPG4-201ENST00000308508 TSPYL1Q9H0U9 437 aa16.76■□□□□ 0.27
CSPG4-201ENST00000308508 PLIN1O60240 522 aa16.76■□□□□ 0.27
CSPG4-201ENST00000308508 EPS15P42566 896 aa16.76■□□□□ 0.27
CSPG4-201ENST00000308508 SAFBQ15424 915 aaKnown RBP eCLIP16.75■□□□□ 0.27
CSPG4-201ENST00000308508 AMPHP49418 695 aa16.75■□□□□ 0.27
CSPG4-201ENST00000308508 ZRSR2Q15696 482 aaKnown RBP16.75■□□□□ 0.27
CSPG4-201ENST00000308508 NOL10Q9BSC4 688 aaKnown RBP16.75■□□□□ 0.27
CSPG4-201ENST00000308508 HSP90AB2PQ58FF8 381 aa16.75■□□□□ 0.27
CSPG4-201ENST00000308508 GTF2E1P29083 439 aaPredicted RBP16.75■□□□□ 0.27
CSPG4-201ENST00000308508 HSP90AB3PQ58FF7 597 aa16.74■□□□□ 0.27
CSPG4-201ENST00000308508 GOLGA6L7A0A1B0GV03 622 aa16.74■□□□□ 0.27
CSPG4-201ENST00000308508 FBXW7Q969H0 707 aa16.73■□□□□ 0.27
CSPG4-201ENST00000308508 ERICH2A1L162 156 aa16.73■□□□□ 0.27
CSPG4-201ENST00000308508 PDILTQ8N807 584 aa16.73■□□□□ 0.27
CSPG4-201ENST00000308508 KIAA0754O94854 1291 aa16.73■□□□□ 0.27
CSPG4-201ENST00000308508 DHX8Q14562 1220 aaKnown RBP16.73■□□□□ 0.27
CSPG4-201ENST00000308508 COG6Q9Y2V7 657 aa16.73■□□□□ 0.27
CSPG4-201ENST00000308508 C22orf23Q9BZE7 217 aa16.73■□□□□ 0.27
CSPG4-201ENST00000308508 IFIT2P09913 472 aaKnown RBP16.73■□□□□ 0.27
CSPG4-201ENST00000308508 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.73■□□□□ 0.27
CSPG4-201ENST00000308508 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.73■□□□□ 0.27
CSPG4-201ENST00000308508 NEXNQ0ZGT2 675 aa16.72■□□□□ 0.27
CSPG4-201ENST00000308508 BCL2L13Q9BXK5 485 aa16.72■□□□□ 0.27
CSPG4-201ENST00000308508 OFD1O75665 1012 aa16.72■□□□□ 0.27
CSPG4-201ENST00000308508 CCDC9Q9Y3X0 531 aaKnown RBP16.72■□□□□ 0.27
CSPG4-201ENST00000308508 TAF3Q5VWG9 929 aa16.72■□□□□ 0.27
CSPG4-201ENST00000308508 AXDND1Q5T1B0 1012 aaPredicted RBP16.72■□□□□ 0.27
CSPG4-201ENST00000308508 RRP7AQ9Y3A4 280 aaKnown RBP16.72■□□□□ 0.27
CSPG4-201ENST00000308508 AAMPQ13685 434 aa16.72■□□□□ 0.27
CSPG4-201ENST00000308508 NGEFQ8N5V2 710 aa16.72■□□□□ 0.27
CSPG4-201ENST00000308508 PLCD4Q9BRC7 762 aa16.72■□□□□ 0.27
CSPG4-201ENST00000308508 MBD3O95983 291 aa16.71■□□□□ 0.27
CSPG4-201ENST00000308508 USP8P40818 1118 aa16.71■□□□□ 0.27
CSPG4-201ENST00000308508 SMARCE1Q969G3 411 aa16.71■□□□□ 0.27
CSPG4-201ENST00000308508 NFXL1Q6ZNB6 911 aa16.71■□□□□ 0.27
CSPG4-201ENST00000308508 CCDC43Q96MW1 224 aaKnown RBP16.71■□□□□ 0.27
CSPG4-201ENST00000308508 TRIM34Q9BYJ4 488 aa16.71■□□□□ 0.27
CSPG4-201ENST00000308508 GOLGA6L10A6NI86 522 aa16.71■□□□□ 0.27
CSPG4-201ENST00000308508 TRIM5Q9C035 493 aa16.71■□□□□ 0.27
CSPG4-201ENST00000308508 C9orf78Q9NZ63 289 aaPredicted RBP16.71■□□□□ 0.27
CSPG4-201ENST00000308508 KIF7Q2M1P5 1343 aa16.7■□□□□ 0.26
CSPG4-201ENST00000308508 GGT6Q6P531 493 aa16.7■□□□□ 0.26
CSPG4-201ENST00000308508 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.7■□□□□ 0.26
CSPG4-201ENST00000308508 CT47B1P0C2W7 299 aaPredicted RBP16.7■□□□□ 0.26
CSPG4-201ENST00000308508 CARMIL1Q5VZK9 1371 aa16.69■□□□□ 0.26
CSPG4-201ENST00000308508 MLECQ14165 292 aa16.69■□□□□ 0.26
CSPG4-201ENST00000308508 PODXL2Q9NZ53 605 aa16.69■□□□□ 0.26
CSPG4-201ENST00000308508 ERLIN2O94905 339 aa16.69■□□□□ 0.26
CSPG4-201ENST00000308508 TSPY26PQ9H489 355 aa16.69■□□□□ 0.26
CSPG4-201ENST00000308508 TRAK2O60296 914 aa16.69■□□□□ 0.26
CSPG4-201ENST00000308508 INCENPQ9NQS7 918 aa16.68■□□□□ 0.26
CSPG4-201ENST00000308508 SDF4Q9BRK5 362 aa16.68■□□□□ 0.26
CSPG4-201ENST00000308508 BRMS1Q9HCU9 246 aa16.68■□□□□ 0.26
CSPG4-201ENST00000308508 CTDP1Q9Y5B0 961 aaPredicted RBP16.68■□□□□ 0.26
CSPG4-201ENST00000308508 DZIP1LQ8IYY4 767 aaKnown RBP16.68■□□□□ 0.26
CSPG4-201ENST00000308508 L3MBTL2Q969R5 705 aa16.67■□□□□ 0.26
CSPG4-201ENST00000308508 BCL11BQ9C0K0 894 aaPredicted RBP16.67■□□□□ 0.26
CSPG4-201ENST00000308508 ERC2O15083 957 aa16.67■□□□□ 0.26
CSPG4-201ENST00000308508 EIF3JO75822 258 aaKnown RBP16.66■□□□□ 0.26
CSPG4-201ENST00000308508 NGDNQ8NEJ9 315 aaKnown RBP16.66■□□□□ 0.26
CSPG4-201ENST00000308508 API5Q9BZZ5 524 aaKnown RBP16.66■□□□□ 0.26
CSPG4-201ENST00000308508 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.66■□□□□ 0.26
CSPG4-201ENST00000308508 RRP9O43818 475 aaKnown RBP16.66■□□□□ 0.26
CSPG4-201ENST00000308508 C1orf141Q5JVX7 400 aa16.66■□□□□ 0.26
CSPG4-201ENST00000308508 NINLQ9Y2I6 1382 aa16.66■□□□□ 0.26
CSPG4-201ENST00000308508 DHX16O60231 1041 aaKnown RBP16.66■□□□□ 0.26
CSPG4-201ENST00000308508 FILIP1LQ4L180 1135 aa16.66■□□□□ 0.26
CSPG4-201ENST00000308508 ZFYVE27Q5T4F4 411 aa16.66■□□□□ 0.26
CSPG4-201ENST00000308508 KINO60870 393 aaKnown RBP16.65■□□□□ 0.26
CSPG4-201ENST00000308508 SMC2O95347 1197 aa16.65■□□□□ 0.26
CSPG4-201ENST00000308508 XBP1P17861 261 aa16.65■□□□□ 0.26
CSPG4-201ENST00000308508 CAVIN1Q6NZI2 390 aaKnown RBP16.65■□□□□ 0.26
CSPG4-201ENST00000308508 DEF6Q9H4E7 631 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms