RNA–Protein interactions for RNA: ENST00000302516.9

SF3B3-201, Transcript of splicing factor 3b subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B3, Length 9,720 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-201ENST00000302516 FGD6Q6ZV73 1430 aa9.3□□□□□ -0.92
SF3B3-201ENST00000302516 CCDC66A2RUB6 948 aa9.3□□□□□ -0.92
SF3B3-201ENST00000302516 ANKRD45Q5TZF3 282 aa9.3□□□□□ -0.92
SF3B3-201ENST00000302516 WWC1Q8IX03 1113 aa9.3□□□□□ -0.92
SF3B3-201ENST00000302516 TRIM29Q14134 588 aa9.29□□□□□ -0.92
SF3B3-201ENST00000302516 SYNE3Q6ZMZ3 975 aa9.29□□□□□ -0.92
SF3B3-201ENST00000302516 RRBP1Q9P2E9 1410 aaKnown RBP9.29□□□□□ -0.92
SF3B3-201ENST00000302516 SLC4A10Q6U841 1118 aa9.29□□□□□ -0.92
SF3B3-201ENST00000302516 FOXD4L1Q9NU39 408 aa9.29□□□□□ -0.92
SF3B3-201ENST00000302516 HMGN5P82970 282 aaKnown RBP9.29□□□□□ -0.92
SF3B3-201ENST00000302516 CRBNQ96SW2 442 aa9.29□□□□□ -0.92
SF3B3-201ENST00000302516 RUFY1Q96T51 708 aa9.29□□□□□ -0.92
SF3B3-201ENST00000302516 API5Q9BZZ5 524 aaKnown RBP9.29□□□□□ -0.92
SF3B3-201ENST00000302516 NASPP49321 788 aaPredicted RBP9.28□□□□□ -0.92
SF3B3-201ENST00000302516 NOL8Q76FK4 1167 aaKnown RBP9.28□□□□□ -0.92
SF3B3-201ENST00000302516 CCAR2Q8N163 923 aaKnown RBP9.28□□□□□ -0.92
SF3B3-201ENST00000302516 HSP90B2PQ58FF3 399 aa9.28□□□□□ -0.92
SF3B3-201ENST00000302516 CLUAP1Q96AJ1 413 aa9.28□□□□□ -0.92
SF3B3-201ENST00000302516 PANK3Q9H999 370 aa9.28□□□□□ -0.92
SF3B3-201ENST00000302516 LRRC9Q6ZRR7 1453 aa9.28□□□□□ -0.92
SF3B3-201ENST00000302516 SOX12O15370 315 aa9.28□□□□□ -0.92
SF3B3-201ENST00000302516 DZIP1LQ8IYY4 767 aaKnown RBP9.28□□□□□ -0.92
SF3B3-201ENST00000302516 ERCC4Q92889 916 aaPredicted RBP9.28□□□□□ -0.92
SF3B3-201ENST00000302516 MBD3O95983 291 aa9.27□□□□□ -0.92
SF3B3-201ENST00000302516 PLEKHH2Q8IVE3 1493 aa9.27□□□□□ -0.93
SF3B3-201ENST00000302516 CCDC7Q96M83 1385 aa9.27□□□□□ -0.93
SF3B3-201ENST00000302516 HSP90AB4PQ58FF6 505 aa9.27□□□□□ -0.93
SF3B3-201ENST00000302516 EID1Q9Y6B2 187 aa9.27□□□□□ -0.93
SF3B3-201ENST00000302516 PAK3O75914 559 aaPredicted RBP9.27□□□□□ -0.93
SF3B3-201ENST00000302516 CSB-PGBD3P0DP91 1061 aa9.27□□□□□ -0.93
SF3B3-201ENST00000302516 PES1O00541 588 aaKnown RBP9.27□□□□□ -0.93
SF3B3-201ENST00000302516 DCTN1Q14203 1278 aa9.27□□□□□ -0.93
SF3B3-201ENST00000302516 SASS6Q6UVJ0 657 aa9.27□□□□□ -0.93
SF3B3-201ENST00000302516 AMOTL1Q8IY63 956 aa9.27□□□□□ -0.93
SF3B3-201ENST00000302516 RILPL2Q969X0 211 aa9.27□□□□□ -0.93
SF3B3-201ENST00000302516 MYO6Q9UM54 1294 aa9.27□□□□□ -0.93
SF3B3-201ENST00000302516 HOMER1Q86YM7 354 aa9.27□□□□□ -0.93
SF3B3-201ENST00000302516 ERC2O15083 957 aa9.27□□□□□ -0.93
SF3B3-201ENST00000302516 CREBRFQ8IUR6 639 aa9.26□□□□□ -0.93
SF3B3-201ENST00000302516 NEXNQ0ZGT2 675 aa9.26□□□□□ -0.93
SF3B3-201ENST00000302516 EXOC6Q8TAG9 804 aa9.26□□□□□ -0.93
SF3B3-201ENST00000302516 CCDC173Q0VFZ6 552 aa9.26□□□□□ -0.93
SF3B3-201ENST00000302516 AMPHP49418 695 aa9.26□□□□□ -0.93
SF3B3-201ENST00000302516 MCM2P49736 904 aa9.26□□□□□ -0.93
SF3B3-201ENST00000302516 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.26□□□□□ -0.93
SF3B3-201ENST00000302516 COG3Q96JB2 828 aa9.26□□□□□ -0.93
SF3B3-201ENST00000302516 FAM13BQ9NYF5 915 aa9.26□□□□□ -0.93
SF3B3-201ENST00000302516 MARCH6O60337 910 aa9.25□□□□□ -0.93
SF3B3-201ENST00000302516 ANO2Q9NQ90 1003 aa9.25□□□□□ -0.93
SF3B3-201ENST00000302516 MCTP1Q6DN14 999 aa9.25□□□□□ -0.93
SF3B3-201ENST00000302516 CCDC73Q6ZRK6 1079 aa9.25□□□□□ -0.93
SF3B3-201ENST00000302516 ZNF592Q92610 1267 aa9.25□□□□□ -0.93
SF3B3-201ENST00000302516 ST20-MTHFSA0A0A6YYL1 179 aa9.25□□□□□ -0.93
SF3B3-201ENST00000302516 C22orf23Q9BZE7 217 aa9.25□□□□□ -0.93
SF3B3-201ENST00000302516 MNS1Q8NEH6 495 aa9.25□□□□□ -0.93
SF3B3-201ENST00000302516 CASKIN1Q8WXD9 1431 aa9.25□□□□□ -0.93
SF3B3-201ENST00000302516 RUNDC1Q96C34 613 aa9.25□□□□□ -0.93
SF3B3-201ENST00000302516 GGT6Q6P531 493 aa9.25□□□□□ -0.93
SF3B3-201ENST00000302516 CADPSQ9ULU8 1353 aa9.25□□□□□ -0.93
SF3B3-201ENST00000302516 BICD2Q8TD16 824 aa9.25□□□□□ -0.93
SF3B3-201ENST00000302516 CDC45O75419 566 aa9.24□□□□□ -0.93
SF3B3-201ENST00000302516 CPLX1O14810 134 aa9.24□□□□□ -0.93
SF3B3-201ENST00000302516 TAF3Q5VWG9 929 aa9.24□□□□□ -0.93
SF3B3-201ENST00000302516 IFT57Q9NWB7 429 aa9.24□□□□□ -0.93
SF3B3-201ENST00000302516 FOXD4L5Q5VV16 416 aaPredicted RBP9.24□□□□□ -0.93
SF3B3-201ENST00000302516 FOXD4L4Q8WXT5 416 aaPredicted RBP9.24□□□□□ -0.93
SF3B3-201ENST00000302516 RRP12Q5JTH9 1297 aaKnown RBP9.24□□□□□ -0.93
SF3B3-201ENST00000302516 SMC3Q9UQE7 1217 aa9.24□□□□□ -0.93
SF3B3-201ENST00000302516 PSMA5P28066 241 aa9.24□□□□□ -0.93
SF3B3-201ENST00000302516 CAVIN1Q6NZI2 390 aaKnown RBP9.24□□□□□ -0.93
SF3B3-201ENST00000302516 WASHC2CQ9Y4E1 1318 aa9.23□□□□□ -0.93
SF3B3-201ENST00000302516 C1orf141Q5JVX7 400 aa9.23□□□□□ -0.93
SF3B3-201ENST00000302516 PDCP20941 246 aa9.23□□□□□ -0.93
SF3B3-201ENST00000302516 RDXP35241 583 aaKnown RBP9.23□□□□□ -0.93
SF3B3-201ENST00000302516 VGFO15240 615 aaPredicted RBP9.23□□□□□ -0.93
SF3B3-201ENST00000302516 TOMM22Q9NS69 142 aa9.23□□□□□ -0.93
SF3B3-201ENST00000302516 IFIT2P09913 472 aaKnown RBP9.23□□□□□ -0.93
SF3B3-201ENST00000302516 OLFM4Q6UX06 510 aa9.23□□□□□ -0.93
SF3B3-201ENST00000302516 NOL10Q9BSC4 688 aaKnown RBP9.23□□□□□ -0.93
SF3B3-201ENST00000302516 DDX58O95786 925 aaKnown RBP9.22□□□□□ -0.93
SF3B3-201ENST00000302516 TIAM1Q13009 1591 aa9.22□□□□□ -0.93
SF3B3-201ENST00000302516 FANCD2Q9BXW9 1451 aa9.22□□□□□ -0.93
SF3B3-201ENST00000302516 WASHC2AQ641Q2 1341 aa9.22□□□□□ -0.93
SF3B3-201ENST00000302516 TRDNQ13061 729 aa9.22□□□□□ -0.93
SF3B3-201ENST00000302516 NFKBIBQ15653 356 aa9.22□□□□□ -0.93
SF3B3-201ENST00000302516 SAFBQ15424 915 aaKnown RBP eCLIP9.22□□□□□ -0.93
SF3B3-201ENST00000302516 ATAD2BQ9ULI0 1458 aa9.22□□□□□ -0.93
SF3B3-201ENST00000302516 NGDNQ8NEJ9 315 aaKnown RBP9.22□□□□□ -0.93
SF3B3-201ENST00000302516 GNAI1P63096 354 aa9.22□□□□□ -0.93
SF3B3-201ENST00000302516 C9orf78Q9NZ63 289 aaPredicted RBP9.22□□□□□ -0.93
SF3B3-201ENST00000302516 HIP1O00291 1037 aa9.21□□□□□ -0.93
SF3B3-201ENST00000302516 KIF3BO15066 747 aa9.21□□□□□ -0.93
SF3B3-201ENST00000302516 BRMS1Q9HCU9 246 aa9.21□□□□□ -0.93
SF3B3-201ENST00000302516 TOP2BQ02880 1626 aa9.21□□□□□ -0.93
SF3B3-201ENST00000302516 RABEP1Q15276 862 aa9.21□□□□□ -0.93
SF3B3-201ENST00000302516 TCEAL9Q9UHQ7 104 aa9.21□□□□□ -0.93
SF3B3-201ENST00000302516 COG6Q9Y2V7 657 aa9.21□□□□□ -0.93
SF3B3-201ENST00000302516 PDIA4P13667 645 aaKnown RBP9.21□□□□□ -0.94
SF3B3-201ENST00000302516 VPS53Q5VIR6 699 aa9.21□□□□□ -0.94
SF3B3-201ENST00000302516 TXLNBQ8N3L3 684 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms