RNA–Protein interactions for RNA: ENST00000299847.6

CHRFAM7A-201, Transcript of CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusion, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHRFAM7A, Length 6,220 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRFAM7A-201ENST00000299847 HMOX1P09601 288 aa16.64■□□□□ 0.25
CHRFAM7A-201ENST00000299847 TSR1Q2NL82 804 aaKnown RBP16.64■□□□□ 0.25
CHRFAM7A-201ENST00000299847 E9PSI1 815 aa16.64■□□□□ 0.25
CHRFAM7A-201ENST00000299847 KIF3AQ9Y496 699 aa16.64■□□□□ 0.25
CHRFAM7A-201ENST00000299847 RIPK4P57078 832 aa16.64■□□□□ 0.25
CHRFAM7A-201ENST00000299847 SYNE3Q6ZMZ3 975 aa16.64■□□□□ 0.25
CHRFAM7A-201ENST00000299847 FYB1O15117 783 aa16.63■□□□□ 0.25
CHRFAM7A-201ENST00000299847 ZNF428Q96B54 188 aa16.63■□□□□ 0.25
CHRFAM7A-201ENST00000299847 IFIT2P09913 472 aaKnown RBP16.63■□□□□ 0.25
CHRFAM7A-201ENST00000299847 GSE1Q14687 1217 aa16.63■□□□□ 0.25
CHRFAM7A-201ENST00000299847 TRIM34Q9BYJ4 488 aa16.63■□□□□ 0.25
CHRFAM7A-201ENST00000299847 WIZO95785 1651 aa16.63■□□□□ 0.25
CHRFAM7A-201ENST00000299847 TCEAL9Q9UHQ7 104 aa16.62■□□□□ 0.25
CHRFAM7A-201ENST00000299847 PHLDB1Q86UU1 1377 aa16.62■□□□□ 0.25
CHRFAM7A-201ENST00000299847 CCDC18Q5T9S5 1454 aa16.62■□□□□ 0.25
CHRFAM7A-201ENST00000299847 MTMR7Q9Y216 660 aa16.61■□□□□ 0.25
CHRFAM7A-201ENST00000299847 USP47Q96K76 1375 aa16.61■□□□□ 0.25
CHRFAM7A-201ENST00000299847 RAPGEF2Q9Y4G8 1499 aa16.61■□□□□ 0.25
CHRFAM7A-201ENST00000299847 KLHL34Q8N239 644 aa16.61■□□□□ 0.25
CHRFAM7A-201ENST00000299847 EVC2Q86UK5 1308 aa16.61■□□□□ 0.25
CHRFAM7A-201ENST00000299847 NFXL1Q6ZNB6 911 aa16.61■□□□□ 0.25
CHRFAM7A-201ENST00000299847 AIMP1Q12904 312 aaKnown RBP16.6■□□□□ 0.25
CHRFAM7A-201ENST00000299847 VPS37DQ86XT2 251 aa16.6■□□□□ 0.25
CHRFAM7A-201ENST00000299847 PRKRIP1Q9H875 184 aaPredicted RBP16.6■□□□□ 0.25
CHRFAM7A-201ENST00000299847 VPS37CA5D8V6 355 aaPredicted RBP16.6■□□□□ 0.25
CHRFAM7A-201ENST00000299847 TRIM29Q14134 588 aa16.6■□□□□ 0.25
CHRFAM7A-201ENST00000299847 BICD2Q8TD16 824 aa16.6■□□□□ 0.25
CHRFAM7A-201ENST00000299847 TPM2P07951 284 aa16.6■□□□□ 0.25
CHRFAM7A-201ENST00000299847 NEXNQ0ZGT2 675 aa16.59■□□□□ 0.25
CHRFAM7A-201ENST00000299847 FKBP5Q13451 457 aaPredicted RBP16.59■□□□□ 0.25
CHRFAM7A-201ENST00000299847 PDS5BQ9NTI5 1447 aa16.59■□□□□ 0.25
CHRFAM7A-201ENST00000299847 CTDP1Q9Y5B0 961 aaPredicted RBP16.59■□□□□ 0.25
CHRFAM7A-201ENST00000299847 DIAPH1O60610 1272 aaKnown RBP16.58■□□□□ 0.25
CHRFAM7A-201ENST00000299847 NOL10Q9BSC4 688 aaKnown RBP16.58■□□□□ 0.25
CHRFAM7A-201ENST00000299847 DHX57Q6P158 1386 aaKnown RBP16.58■□□□□ 0.24
CHRFAM7A-201ENST00000299847 LNPKQ9C0E8 428 aa16.58■□□□□ 0.24
CHRFAM7A-201ENST00000299847 CPLX1O14810 134 aa16.57■□□□□ 0.24
CHRFAM7A-201ENST00000299847 ZNF771Q7L3S4 317 aaPredicted RBP16.57■□□□□ 0.24
CHRFAM7A-201ENST00000299847 PSME1Q06323 249 aa16.57■□□□□ 0.24
CHRFAM7A-201ENST00000299847 TPM1P09493 284 aa16.56■□□□□ 0.24
CHRFAM7A-201ENST00000299847 DZIP1LQ8IYY4 767 aaKnown RBP16.56■□□□□ 0.24
CHRFAM7A-201ENST00000299847 JPH4Q96JJ6 628 aa16.56■□□□□ 0.24
CHRFAM7A-201ENST00000299847 MEX3CQ5U5Q3 659 aaKnown RBP16.56■□□□□ 0.24
CHRFAM7A-201ENST00000299847 PANK1Q8TE04 598 aa16.56■□□□□ 0.24
CHRFAM7A-201ENST00000299847 AMOTL1Q8IY63 956 aa16.55■□□□□ 0.24
CHRFAM7A-201ENST00000299847 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.55■□□□□ 0.24
CHRFAM7A-201ENST00000299847 VSIG10Q8N0Z9 540 aa16.55■□□□□ 0.24
CHRFAM7A-201ENST00000299847 ATP6V1DQ9Y5K8 247 aa16.55■□□□□ 0.24
CHRFAM7A-201ENST00000299847 HOMER1Q86YM7 354 aa16.55■□□□□ 0.24
CHRFAM7A-201ENST00000299847 TSPYL4Q9UJ04 414 aa16.55■□□□□ 0.24
CHRFAM7A-201ENST00000299847 ZKSCAN1P17029 563 aaPredicted RBP16.55■□□□□ 0.24
CHRFAM7A-201ENST00000299847 FAM13BQ9NYF5 915 aa16.55■□□□□ 0.24
CHRFAM7A-201ENST00000299847 NEUROD6Q96NK8 337 aa16.54■□□□□ 0.24
CHRFAM7A-201ENST00000299847 RUFY2Q8WXA3 655 aa16.54■□□□□ 0.24
CHRFAM7A-201ENST00000299847 G3BP1Q13283 466 aaKnown RBP eCLIP16.54■□□□□ 0.24
CHRFAM7A-201ENST00000299847 FAM177BA6PVY3 158 aa16.54■□□□□ 0.24
CHRFAM7A-201ENST00000299847 DDX19BQ9UMR2 479 aa16.53■□□□□ 0.24
CHRFAM7A-201ENST00000299847 SKOR2Q2VWA4 1001 aaPredicted RBP16.53■□□□□ 0.24
CHRFAM7A-201ENST00000299847 ZBED9Q6R2W3 1325 aa16.53■□□□□ 0.24
CHRFAM7A-201ENST00000299847 CYB5RLQ6IPT4 315 aa16.53■□□□□ 0.24
CHRFAM7A-201ENST00000299847 RUSC2Q8N2Y8 1516 aa16.52■□□□□ 0.24
CHRFAM7A-201ENST00000299847 CCDC27Q2M243 656 aa16.52■□□□□ 0.24
CHRFAM7A-201ENST00000299847 CABP2Q9NPB3 220 aa16.52■□□□□ 0.23
CHRFAM7A-201ENST00000299847 VGFO15240 615 aaPredicted RBP16.52■□□□□ 0.23
CHRFAM7A-201ENST00000299847 NAP1L1P55209 391 aaKnown RBP16.51■□□□□ 0.23
CHRFAM7A-201ENST00000299847 GGNBP2Q9H3C7 697 aa16.51■□□□□ 0.23
CHRFAM7A-201ENST00000299847 REC8O95072 547 aa16.51■□□□□ 0.23
CHRFAM7A-201ENST00000299847 SETQ01105 290 aaPredicted RBP16.51■□□□□ 0.23
CHRFAM7A-201ENST00000299847 SMC3Q9UQE7 1217 aa16.51■□□□□ 0.23
CHRFAM7A-201ENST00000299847 WASHC4Q2M389 1173 aa16.5■□□□□ 0.23
CHRFAM7A-201ENST00000299847 TRDNQ13061 729 aa16.5■□□□□ 0.23
CHRFAM7A-201ENST00000299847 RIC3Q7Z5B4 369 aa16.5■□□□□ 0.23
CHRFAM7A-201ENST00000299847 TTLL5Q6EMB2 1281 aa16.49■□□□□ 0.23
CHRFAM7A-201ENST00000299847 CPLX2Q6PUV4 134 aaKnown RBP16.49■□□□□ 0.23
CHRFAM7A-201ENST00000299847 CCDC70Q6NSX1 233 aa16.49■□□□□ 0.23
CHRFAM7A-201ENST00000299847 ERICH2A1L162 156 aa16.49■□□□□ 0.23
CHRFAM7A-201ENST00000299847 UACAQ9BZF9 1416 aa16.48■□□□□ 0.23
CHRFAM7A-201ENST00000299847 SASS6Q6UVJ0 657 aa16.48■□□□□ 0.23
CHRFAM7A-201ENST00000299847 RSPH6AQ9H0K4 717 aa16.48■□□□□ 0.23
CHRFAM7A-201ENST00000299847 TMEM132EQ6IEE7 984 aa16.48■□□□□ 0.23
CHRFAM7A-201ENST00000299847 C1orf115Q9H7X2 142 aa16.48■□□□□ 0.23
CHRFAM7A-201ENST00000299847 SMARCA2P51531 1590 aa16.47■□□□□ 0.23
CHRFAM7A-201ENST00000299847 STK11IPQ8N1F8 1099 aa16.47■□□□□ 0.23
CHRFAM7A-201ENST00000299847 CNKSR2Q8WXI2 1034 aa16.47■□□□□ 0.23
CHRFAM7A-201ENST00000299847 RUNDC1Q96C34 613 aa16.47■□□□□ 0.23
CHRFAM7A-201ENST00000299847 DDX58O95786 925 aaKnown RBP16.47■□□□□ 0.23
CHRFAM7A-201ENST00000299847 INTS3Q68E01 1043 aaKnown RBP16.47■□□□□ 0.23
CHRFAM7A-201ENST00000299847 IFT57Q9NWB7 429 aa16.47■□□□□ 0.23
CHRFAM7A-201ENST00000299847 RSPH4AQ5TD94 716 aa16.46■□□□□ 0.23
CHRFAM7A-201ENST00000299847 PDILTQ8N807 584 aa16.46■□□□□ 0.23
CHRFAM7A-201ENST00000299847 RNF214Q8ND24 703 aa16.46■□□□□ 0.23
CHRFAM7A-201ENST00000299847 USP35Q9P2H5 1018 aa16.46■□□□□ 0.23
CHRFAM7A-201ENST00000299847 SKIDA1Q1XH10 827 aa16.46■□□□□ 0.22
CHRFAM7A-201ENST00000299847 C22orf23Q9BZE7 217 aa16.46■□□□□ 0.22
CHRFAM7A-201ENST00000299847 API5Q9BZZ5 524 aaKnown RBP16.46■□□□□ 0.22
CHRFAM7A-201ENST00000299847 ZNF644Q9H582 1327 aaPredicted RBP16.46■□□□□ 0.22
CHRFAM7A-201ENST00000299847 LRRFIP1Q32MZ4 808 aaKnown RBP16.45■□□□□ 0.22
CHRFAM7A-201ENST00000299847 CWC22Q9HCG8 908 aaKnown RBP16.45■□□□□ 0.22
CHRFAM7A-201ENST00000299847 RNF20Q5VTR2 975 aa16.45■□□□□ 0.22
CHRFAM7A-201ENST00000299847 CHMP5Q9NZZ3 219 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms