RNA–Protein interactions for RNA: ENST00000298130.4

SPTSSA-201, Transcript of serine palmitoyltransferase small subunit A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTSSA, Length 2,777 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTSSA-201ENST00000298130 APAF1O14727 1248 aa32.03■■■□□ 2.72
SPTSSA-201ENST00000298130 MADDQ8WXG6 1647 aa32.03■■■□□ 2.72
SPTSSA-201ENST00000298130 RNF17Q9BXT8 1623 aaKnown RBP32.01■■■□□ 2.72
SPTSSA-201ENST00000298130 SCAF11Q99590 1463 aaKnown RBP32.01■■■□□ 2.71
SPTSSA-201ENST00000298130 ADGRF5Q8IZF2 1346 aa32.01■■■□□ 2.71
SPTSSA-201ENST00000298130 MS4A1P11836 297 aa32■■■□□ 2.71
SPTSSA-201ENST00000298130 CDCA8Q53HL2 280 aa31.99■■■□□ 2.71
SPTSSA-201ENST00000298130 CHGAP10645 457 aaKnown RBP31.98■■■□□ 2.71
SPTSSA-201ENST00000298130 SLC4A3P48751 1232 aa31.98■■■□□ 2.71
SPTSSA-201ENST00000298130 UGGT1Q9NYU2 1555 aa31.98■■■□□ 2.71
SPTSSA-201ENST00000298130 DMRT2Q9Y5R5 561 aa31.97■■■□□ 2.71
SPTSSA-201ENST00000298130 CLTCL1P53675 1640 aa31.97■■■□□ 2.71
SPTSSA-201ENST00000298130 TNNT2P45379 298 aaPredicted RBP31.96■■■□□ 2.71
SPTSSA-201ENST00000298130 SCAPERQ9BY12 1400 aa31.96■■■□□ 2.71
SPTSSA-201ENST00000298130 ZNF521Q96K83 1311 aa31.96■■■□□ 2.71
SPTSSA-201ENST00000298130 BCAR3O75815 825 aa31.95■■■□□ 2.71
SPTSSA-201ENST00000298130 CARD14Q9BXL6 1004 aa31.95■■■□□ 2.71
SPTSSA-201ENST00000298130 RGS3P49796 1198 aa31.93■■■□□ 2.7
SPTSSA-201ENST00000298130 SLFN5Q08AF3 891 aa31.93■■■□□ 2.7
SPTSSA-201ENST00000298130 INSRP06213 1382 aa31.93■■■□□ 2.7
SPTSSA-201ENST00000298130 TRPM2O94759 1503 aa31.92■■■□□ 2.7
SPTSSA-201ENST00000298130 IQGAP1P46940 1657 aa31.92■■■□□ 2.7
SPTSSA-201ENST00000298130 ASXL1Q8IXJ9 1541 aa31.91■■■□□ 2.7
SPTSSA-201ENST00000298130 SENP3Q9H4L4 574 aaPredicted RBP31.91■■■□□ 2.7
SPTSSA-201ENST00000298130 ZFYVE16Q7Z3T8 1539 aa31.91■■■□□ 2.7
SPTSSA-201ENST00000298130 NEFMP07197 916 aa31.9■■■□□ 2.7
SPTSSA-201ENST00000298130 KDM2BQ8NHM5 1336 aa31.9■■■□□ 2.7
SPTSSA-201ENST00000298130 PTPRTO14522 1441 aa31.9■■■□□ 2.7
SPTSSA-201ENST00000298130 NEUROD2Q15784 382 aa31.89■■■□□ 2.7
SPTSSA-201ENST00000298130 KANK1Q14678 1352 aa31.88■■■□□ 2.69
SPTSSA-201ENST00000298130 SPHKAPQ2M3C7 1700 aa31.84■■■□□ 2.69
SPTSSA-201ENST00000298130 EIF3AQ14152 1382 aaKnown RBP31.84■■■□□ 2.69
SPTSSA-201ENST00000298130 TRAK1Q9UPV9 953 aa31.84■■■□□ 2.69
SPTSSA-201ENST00000298130 SYNMO15061 1565 aa31.83■■■□□ 2.69
SPTSSA-201ENST00000298130 CENPQQ7L2Z9 268 aaPredicted RBP31.83■■■□□ 2.69
SPTSSA-201ENST00000298130 RRP7AQ9Y3A4 280 aaKnown RBP31.83■■■□□ 2.69
SPTSSA-201ENST00000298130 FANCAO15360 1455 aa31.82■■■□□ 2.69
SPTSSA-201ENST00000298130 RTEL1-TNFRSF6BF6WH68 1400 aa31.82■■■□□ 2.68
SPTSSA-201ENST00000298130 PIK3C2GO75747 1445 aa31.81■■■□□ 2.68
SPTSSA-201ENST00000298130 NUTM2DQ5VT03 806 aaPredicted RBP31.8■■■□□ 2.68
SPTSSA-201ENST00000298130 GOLGA6L2Q8N9W4 650 aaPredicted RBP31.8■■■□□ 2.68
SPTSSA-201ENST00000298130 CEP152O94986 1710 aa31.8■■■□□ 2.68
SPTSSA-201ENST00000298130 TMEM132EQ6IEE7 984 aa31.79■■■□□ 2.68
SPTSSA-201ENST00000298130 MYOM1P52179 1685 aa31.79■■■□□ 2.68
SPTSSA-201ENST00000298130 ERVK-7P63135 1459 aa31.78■■■□□ 2.68
SPTSSA-201ENST00000298130 ATP7AQ04656 1500 aa31.77■■■□□ 2.68
SPTSSA-201ENST00000298130 SLC12A5Q9H2X9 1139 aa31.77■■■□□ 2.68
SPTSSA-201ENST00000298130 UHRF1BP1LA0JNW5 1464 aa31.76■■■□□ 2.68
SPTSSA-201ENST00000298130 TRMT2AQ8IZ69 625 aaKnown RBP31.75■■■□□ 2.67
SPTSSA-201ENST00000298130 ADGRL1O94910 1474 aa31.74■■■□□ 2.67
SPTSSA-201ENST00000298130 C8orf34Q49A92 452 aa31.74■■■□□ 2.67
SPTSSA-201ENST00000298130 GGT6Q6P531 493 aa31.74■■■□□ 2.67
SPTSSA-201ENST00000298130 STAC3Q96MF2 364 aa31.73■■■□□ 2.67
SPTSSA-201ENST00000298130 PANK1Q8TE04 598 aa31.72■■■□□ 2.67
SPTSSA-201ENST00000298130 TET3O43151 1660 aa31.71■■■□□ 2.67
SPTSSA-201ENST00000298130 IGHDP01880 384 aa31.71■■■□□ 2.67
SPTSSA-201ENST00000298130 FRAT1Q92837 279 aaPredicted RBP31.71■■■□□ 2.67
SPTSSA-201ENST00000298130 CLASP1Q7Z460 1538 aa31.7■■■□□ 2.67
SPTSSA-201ENST00000298130 E9PSI1 815 aa31.7■■■□□ 2.66
SPTSSA-201ENST00000298130 FAM161AQ3B820 660 aa31.69■■■□□ 2.66
SPTSSA-201ENST00000298130 COG6Q9Y2V7 657 aa31.69■■■□□ 2.66
SPTSSA-201ENST00000298130 NOS1P29475 1434 aa31.69■■■□□ 2.66
SPTSSA-201ENST00000298130 NKTRP30414 1462 aaKnown RBP31.69■■■□□ 2.66
SPTSSA-201ENST00000298130 CANXP27824 592 aaKnown RBP31.69■■■□□ 2.66
SPTSSA-201ENST00000298130 MORC1Q86VD1 984 aa31.69■■■□□ 2.66
SPTSSA-201ENST00000298130 KDM5AP29375 1690 aaKnown RBP31.69■■■□□ 2.66
SPTSSA-201ENST00000298130 NPC1L1Q9UHC9 1359 aa31.68■■■□□ 2.66
SPTSSA-201ENST00000298130 ABCA6Q8N139 1617 aa31.68■■■□□ 2.66
SPTSSA-201ENST00000298130 CENPJQ9HC77 1338 aaPredicted RBP31.67■■■□□ 2.66
SPTSSA-201ENST00000298130 WWC1Q8IX03 1113 aa31.67■■■□□ 2.66
SPTSSA-201ENST00000298130 DEPDC5O75140 1603 aa31.67■■■□□ 2.66
SPTSSA-201ENST00000298130 BCL2L13Q9BXK5 485 aa31.67■■■□□ 2.66
SPTSSA-201ENST00000298130 CFAP65Q6ZU64 1925 aaKnown RBP31.66■■■□□ 2.66
SPTSSA-201ENST00000298130 DDRGK1Q96HY6 314 aa31.66■■■□□ 2.66
SPTSSA-201ENST00000298130 TNNQ9UQP3 1299 aa31.64■■■□□ 2.66
SPTSSA-201ENST00000298130 NSD3Q9BZ95 1437 aa31.64■■■□□ 2.66
SPTSSA-201ENST00000298130 SAFB2Q14151 953 aaKnown RBP eCLIP31.63■■■□□ 2.65
SPTSSA-201ENST00000298130 DAXXQ9UER7 740 aaPredicted RBP31.63■■■□□ 2.65
SPTSSA-201ENST00000298130 MAP3K4Q9Y6R4 1608 aa31.63■■■□□ 2.65
SPTSSA-201ENST00000298130 INO80Q9ULG1 1556 aaPredicted RBP31.61■■■□□ 2.65
SPTSSA-201ENST00000298130 VWDEQ8N2E2 1590 aa31.61■■■□□ 2.65
SPTSSA-201ENST00000298130 PPM1GO15355 546 aaPredicted RBP31.6■■■□□ 2.65
SPTSSA-201ENST00000298130 MROH1Q8NDA8 1641 aa31.6■■■□□ 2.65
SPTSSA-201ENST00000298130 TCP11L2Q8N4U5 519 aa31.57■■■□□ 2.65
SPTSSA-201ENST00000298130 MTHFSP49914 203 aa31.57■■■□□ 2.64
SPTSSA-201ENST00000298130 IL27Q8NEV9 243 aa31.57■■■□□ 2.64
SPTSSA-201ENST00000298130 MROH2AA6NES4 1674 aa31.57■■■□□ 2.64
SPTSSA-201ENST00000298130 RTN4Q9NQC3 1192 aaKnown RBP31.56■■■□□ 2.64
SPTSSA-201ENST00000298130 ASXL2Q76L83 1435 aa31.55■■■□□ 2.64
SPTSSA-201ENST00000298130 CLUAP1Q96AJ1 413 aa31.55■■■□□ 2.64
SPTSSA-201ENST00000298130 NFKBIBQ15653 356 aa31.55■■■□□ 2.64
SPTSSA-201ENST00000298130 MYOM2P54296 1465 aa31.55■■■□□ 2.64
SPTSSA-201ENST00000298130 ARAP3Q8WWN8 1544 aa31.54■■■□□ 2.64
SPTSSA-201ENST00000298130 ABCA9Q8IUA7 1624 aa31.54■■■□□ 2.64
SPTSSA-201ENST00000298130 PPRC1Q5VV67 1664 aaKnown RBP31.51■■■□□ 2.64
SPTSSA-201ENST00000298130 SEC24BO95487 1268 aa31.51■■■□□ 2.64
SPTSSA-201ENST00000298130 EFCAB6Q5THR3 1501 aa31.51■■■□□ 2.63
SPTSSA-201ENST00000298130 POLR3AO14802 1390 aaPredicted RBP31.5■■■□□ 2.63
SPTSSA-201ENST00000298130 RLBP1P12271 317 aa31.5■■■□□ 2.63
SPTSSA-201ENST00000298130 C14orf93Q9H972 538 aaKnown RBP31.5■■■□□ 2.63
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms