RNA–Protein interactions for RNA: ENST00000285116.7

SKA1-201, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SKA1, Length 2,905 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-201ENST00000285116 PTPRTO14522 1441 aa13.73□□□□□ -0.21
SKA1-201ENST00000285116 NPC1L1Q9UHC9 1359 aa13.73□□□□□ -0.21
SKA1-201ENST00000285116 VWDEQ8N2E2 1590 aa13.73□□□□□ -0.21
SKA1-201ENST00000285116 TMF1P82094 1093 aa13.71□□□□□ -0.21
SKA1-201ENST00000285116 NBPF1Q3BBV0 1214 aa13.71□□□□□ -0.21
SKA1-201ENST00000285116 NEFMP07197 916 aa13.71□□□□□ -0.21
SKA1-201ENST00000285116 PPM1GO15355 546 aaPredicted RBP13.7□□□□□ -0.22
SKA1-201ENST00000285116 NPM1P06748 294 aaKnown RBP eCLIP13.7□□□□□ -0.22
SKA1-201ENST00000285116 ZFYVE16Q7Z3T8 1539 aa13.7□□□□□ -0.22
SKA1-201ENST00000285116 PIK3C2GO75747 1445 aa13.7□□□□□ -0.22
SKA1-201ENST00000285116 TRHP20396 242 aaPredicted RBP13.7□□□□□ -0.22
SKA1-201ENST00000285116 AFAP1Q8N556 730 aa13.69□□□□□ -0.22
SKA1-201ENST00000285116 EXOC6Q8TAG9 804 aa13.69□□□□□ -0.22
SKA1-201ENST00000285116 CLTCL1P53675 1640 aa13.69□□□□□ -0.22
SKA1-201ENST00000285116 SCAF11Q99590 1463 aaKnown RBP13.69□□□□□ -0.22
SKA1-201ENST00000285116 INO80Q9ULG1 1556 aaPredicted RBP13.68□□□□□ -0.22
SKA1-201ENST00000285116 KDM5AP29375 1690 aaKnown RBP13.68□□□□□ -0.22
SKA1-201ENST00000285116 AMER1Q5JTC6 1135 aaPredicted RBP13.68□□□□□ -0.22
SKA1-201ENST00000285116 ASXL1Q8IXJ9 1541 aa13.68□□□□□ -0.22
SKA1-201ENST00000285116 IFT172Q9UG01 1749 aa13.68□□□□□ -0.22
SKA1-201ENST00000285116 NPM2Q86SE8 214 aaKnown RBP13.67□□□□□ -0.22
SKA1-201ENST00000285116 MYO3AQ8NEV4 1616 aa13.67□□□□□ -0.22
SKA1-201ENST00000285116 PDE4AP27815 886 aa13.67□□□□□ -0.22
SKA1-201ENST00000285116 CNGB1Q14028 1251 aaPredicted RBP13.67□□□□□ -0.22
SKA1-201ENST00000285116 BACH2Q9BYV9 841 aa13.66□□□□□ -0.22
SKA1-201ENST00000285116 PANK3Q9H999 370 aa13.66□□□□□ -0.22
SKA1-201ENST00000285116 LAS1LQ9Y4W2 734 aaKnown RBP13.66□□□□□ -0.22
SKA1-201ENST00000285116 ABCA9Q8IUA7 1624 aa13.66□□□□□ -0.22
SKA1-201ENST00000285116 MYOM2P54296 1465 aa13.66□□□□□ -0.22
SKA1-201ENST00000285116 ZNF521Q96K83 1311 aa13.65□□□□□ -0.22
SKA1-201ENST00000285116 CDCA8Q53HL2 280 aa13.65□□□□□ -0.22
SKA1-201ENST00000285116 RAPGEF3O95398 923 aa13.63□□□□□ -0.23
SKA1-201ENST00000285116 MAP3K4Q9Y6R4 1608 aa13.63□□□□□ -0.23
SKA1-201ENST00000285116 EFCAB2Q5VUJ9 269 aa13.62□□□□□ -0.23
SKA1-201ENST00000285116 TRAPPC8Q9Y2L5 1435 aa13.62□□□□□ -0.23
SKA1-201ENST00000285116 RGL3Q3MIN7 710 aa13.62□□□□□ -0.23
SKA1-201ENST00000285116 KDM2BQ8NHM5 1336 aa13.62□□□□□ -0.23
SKA1-201ENST00000285116 EIF3AQ14152 1382 aaKnown RBP13.61□□□□□ -0.23
SKA1-201ENST00000285116 FAM69CQ0P6D2 419 aa13.61□□□□□ -0.23
SKA1-201ENST00000285116 CDCA7LQ96GN5 454 aa13.61□□□□□ -0.23
SKA1-201ENST00000285116 DDRGK1Q96HY6 314 aa13.61□□□□□ -0.23
SKA1-201ENST00000285116 VIRMAQ69YN4 1812 aaKnown RBP13.61□□□□□ -0.23
SKA1-201ENST00000285116 MROH1Q8NDA8 1641 aa13.61□□□□□ -0.23
SKA1-201ENST00000285116 KIF1BO60333 1816 aa13.6□□□□□ -0.23
SKA1-201ENST00000285116 MLECQ14165 292 aa13.6□□□□□ -0.23
SKA1-201ENST00000285116 NGEFQ8N5V2 710 aa13.6□□□□□ -0.23
SKA1-201ENST00000285116 NRXN1Q9ULB1 1477 aa13.6□□□□□ -0.23
SKA1-201ENST00000285116 ABCA6Q8N139 1617 aa13.6□□□□□ -0.23
SKA1-201ENST00000285116 ATP7AQ04656 1500 aa13.6□□□□□ -0.23
SKA1-201ENST00000285116 PPP2R1AP30153 589 aa13.6□□□□□ -0.23
SKA1-201ENST00000285116 CC2D1BQ5T0F9 858 aaKnown RBP13.59□□□□□ -0.23
SKA1-201ENST00000285116 SETBP1Q9Y6X0 1596 aa13.59□□□□□ -0.23
SKA1-201ENST00000285116 GSE1Q14687 1217 aa13.59□□□□□ -0.23
SKA1-201ENST00000285116 TRMT2AQ8IZ69 625 aaKnown RBP13.59□□□□□ -0.23
SKA1-201ENST00000285116 UBE2Q2Q8WVN8 375 aa13.59□□□□□ -0.23
SKA1-201ENST00000285116 LMTK2Q8IWU2 1503 aa13.59□□□□□ -0.23
SKA1-201ENST00000285116 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.58□□□□□ -0.24
SKA1-201ENST00000285116 SBNO2Q9Y2G9 1366 aa13.58□□□□□ -0.24
SKA1-201ENST00000285116 ZC3H13Q5T200 1668 aaKnown RBP13.58□□□□□ -0.24
SKA1-201ENST00000285116 USP32Q8NFA0 1604 aa13.58□□□□□ -0.24
SKA1-201ENST00000285116 PLEKHH1Q9ULM0 1364 aa13.58□□□□□ -0.24
SKA1-201ENST00000285116 DUSP27Q5VZP5 1158 aa13.57□□□□□ -0.24
SKA1-201ENST00000285116 CRBNQ96SW2 442 aa13.57□□□□□ -0.24
SKA1-201ENST00000285116 ADAMTS8Q9UP79 889 aa13.57□□□□□ -0.24
SKA1-201ENST00000285116 KNSTRNQ9Y448 316 aa13.57□□□□□ -0.24
SKA1-201ENST00000285116 EFCAB6Q5THR3 1501 aa13.56□□□□□ -0.24
SKA1-201ENST00000285116 CENPQQ7L2Z9 268 aaPredicted RBP13.56□□□□□ -0.24
SKA1-201ENST00000285116 ERVK-7P63135 1459 aa13.55□□□□□ -0.24
SKA1-201ENST00000285116 SPAG9O60271 1321 aaKnown RBP13.54□□□□□ -0.24
SKA1-201ENST00000285116 BRPF3Q9ULD4 1205 aa13.54□□□□□ -0.24
SKA1-201ENST00000285116 KANK1Q14678 1352 aa13.54□□□□□ -0.24
SKA1-201ENST00000285116 NINLQ9Y2I6 1382 aa13.54□□□□□ -0.24
SKA1-201ENST00000285116 NCBP3Q53F19 620 aaKnown RBP13.53□□□□□ -0.24
SKA1-201ENST00000285116 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.53□□□□□ -0.24
SKA1-201ENST00000285116 MROH2AA6NES4 1674 aa13.53□□□□□ -0.24
SKA1-201ENST00000285116 NKTRP30414 1462 aaKnown RBP13.53□□□□□ -0.24
SKA1-201ENST00000285116 SENP3-EIF4A1A0A087X0R7 540 aa13.53□□□□□ -0.24
SKA1-201ENST00000285116 WDR43Q15061 677 aaKnown RBP eCLIP13.53□□□□□ -0.24
SKA1-201ENST00000285116 GOLGA2Q08379 1002 aa13.53□□□□□ -0.24
SKA1-201ENST00000285116 SLFN5Q08AF3 891 aa13.53□□□□□ -0.24
SKA1-201ENST00000285116 NFKBIBQ15653 356 aa13.52□□□□□ -0.24
SKA1-201ENST00000285116 SHPRHQ149N8 1683 aa13.52□□□□□ -0.24
SKA1-201ENST00000285116 ADGRB3O60242 1522 aa13.52□□□□□ -0.25
SKA1-201ENST00000285116 FANCAO15360 1455 aa13.52□□□□□ -0.25
SKA1-201ENST00000285116 PPRC1Q5VV67 1664 aaKnown RBP13.51□□□□□ -0.25
SKA1-201ENST00000285116 PPLO60437 1756 aa13.5□□□□□ -0.25
SKA1-201ENST00000285116 GGT6Q6P531 493 aa13.5□□□□□ -0.25
SKA1-201ENST00000285116 PLIN1O60240 522 aa13.5□□□□□ -0.25
SKA1-201ENST00000285116 POLR3AO14802 1390 aaPredicted RBP13.49□□□□□ -0.25
SKA1-201ENST00000285116 KIDINS220Q9ULH0 1771 aa13.49□□□□□ -0.25
SKA1-201ENST00000285116 NUTM2DQ5VT03 806 aaPredicted RBP13.48□□□□□ -0.25
SKA1-201ENST00000285116 FRAT1Q92837 279 aaPredicted RBP13.48□□□□□ -0.25
SKA1-201ENST00000285116 DAXXQ9UER7 740 aaPredicted RBP13.48□□□□□ -0.25
SKA1-201ENST00000285116 ZMYM3Q14202 1370 aa13.48□□□□□ -0.25
SKA1-201ENST00000285116 C20orf194Q5TEA3 1177 aa13.47□□□□□ -0.25
SKA1-201ENST00000285116 ASXL2Q76L83 1435 aa13.47□□□□□ -0.25
SKA1-201ENST00000285116 QRICH2Q9H0J4 1663 aa13.47□□□□□ -0.25
SKA1-201ENST00000285116 CFAP74Q9C0B2 1584 aa13.47□□□□□ -0.25
SKA1-201ENST00000285116 E9PSI1 815 aa13.46□□□□□ -0.25
SKA1-201ENST00000285116 FAM161AQ3B820 660 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms