RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 PDE3BQ13370 1112 aa21.88■■□□□ 1.09
VPS54-201ENST00000272322 ATP10AO60312 1499 aa21.87■■□□□ 1.09
VPS54-201ENST00000272322 ZBTB47Q9UFB7 747 aaPredicted RBP21.87■■□□□ 1.09
VPS54-201ENST00000272322 GOLGA2Q08379 1002 aa21.86■■□□□ 1.09
VPS54-201ENST00000272322 LAS1LQ9Y4W2 734 aaKnown RBP21.86■■□□□ 1.09
VPS54-201ENST00000272322 BCAR3O75815 825 aa21.86■■□□□ 1.09
VPS54-201ENST00000272322 PDE4AP27815 886 aa21.84■■□□□ 1.09
VPS54-201ENST00000272322 BCL2L13Q9BXK5 485 aa21.83■■□□□ 1.09
VPS54-201ENST00000272322 MAST1Q9Y2H9 1570 aa21.83■■□□□ 1.09
VPS54-201ENST00000272322 ABCC1P33527 1531 aa21.83■■□□□ 1.08
VPS54-201ENST00000272322 ASXL2Q76L83 1435 aa21.83■■□□□ 1.08
VPS54-201ENST00000272322 FRAT1Q92837 279 aaPredicted RBP21.83■■□□□ 1.08
VPS54-201ENST00000272322 MORC1Q86VD1 984 aa21.82■■□□□ 1.08
VPS54-201ENST00000272322 DUSP27Q5VZP5 1158 aa21.82■■□□□ 1.08
VPS54-201ENST00000272322 SLC4A3P48751 1232 aa21.82■■□□□ 1.08
VPS54-201ENST00000272322 UNC13BO14795 1591 aa21.81■■□□□ 1.08
VPS54-201ENST00000272322 WDR7Q9Y4E6 1490 aa21.81■■□□□ 1.08
VPS54-201ENST00000272322 CANXP27824 592 aaKnown RBP21.81■■□□□ 1.08
VPS54-201ENST00000272322 OSCARQ8IYS5 282 aa21.81■■□□□ 1.08
VPS54-201ENST00000272322 PRDM15P57071 1507 aaPredicted RBP21.8■■□□□ 1.08
VPS54-201ENST00000272322 IQGAP3Q86VI3 1631 aa21.8■■□□□ 1.08
VPS54-201ENST00000272322 CABP2Q9NPB3 220 aa21.79■■□□□ 1.08
VPS54-201ENST00000272322 IPO9Q96P70 1041 aaKnown RBP21.79■■□□□ 1.08
VPS54-201ENST00000272322 SHROOM2Q13796 1616 aa21.79■■□□□ 1.08
VPS54-201ENST00000272322 SCAF11Q99590 1463 aaKnown RBP21.79■■□□□ 1.08
VPS54-201ENST00000272322 CYB5RLQ6IPT4 315 aa21.78■■□□□ 1.08
VPS54-201ENST00000272322 NOS1P29475 1434 aa21.78■■□□□ 1.08
VPS54-201ENST00000272322 CENPJQ9HC77 1338 aaPredicted RBP21.77■■□□□ 1.08
VPS54-201ENST00000272322 MLECQ14165 292 aa21.77■■□□□ 1.08
VPS54-201ENST00000272322 E9PCH4 1651 aa21.75■■□□□ 1.07
VPS54-201ENST00000272322 PLXNC1O60486 1568 aa21.75■■□□□ 1.07
VPS54-201ENST00000272322 EIF3AQ14152 1382 aaKnown RBP21.75■■□□□ 1.07
VPS54-201ENST00000272322 CLUAP1Q96AJ1 413 aa21.74■■□□□ 1.07
VPS54-201ENST00000272322 ZFYVE16Q7Z3T8 1539 aa21.73■■□□□ 1.07
VPS54-201ENST00000272322 ATP7AQ04656 1500 aa21.72■■□□□ 1.07
VPS54-201ENST00000272322 MTHFSP49914 203 aa21.72■■□□□ 1.07
VPS54-201ENST00000272322 SRPK2P78362 688 aaKnown RBP21.72■■□□□ 1.07
VPS54-201ENST00000272322 CLTCL1P53675 1640 aa21.72■■□□□ 1.07
VPS54-201ENST00000272322 TCERG1O14776 1098 aaKnown RBP21.71■■□□□ 1.07
VPS54-201ENST00000272322 PANK1Q8TE04 598 aa21.71■■□□□ 1.07
VPS54-201ENST00000272322 PPM1GO15355 546 aaPredicted RBP21.71■■□□□ 1.07
VPS54-201ENST00000272322 SLFN5Q08AF3 891 aa21.71■■□□□ 1.07
VPS54-201ENST00000272322 COG6Q9Y2V7 657 aa21.71■■□□□ 1.07
VPS54-201ENST00000272322 FBLN1P23142 703 aa21.7■■□□□ 1.06
VPS54-201ENST00000272322 STAG3Q9UJ98 1225 aa21.7■■□□□ 1.06
VPS54-201ENST00000272322 U2SURPO15042 1029 aaKnown RBP21.7■■□□□ 1.06
VPS54-201ENST00000272322 MINK1Q8N4C8 1332 aaPredicted RBP21.7■■□□□ 1.06
VPS54-201ENST00000272322 BCL11AQ9H165 835 aa21.7■■□□□ 1.06
VPS54-201ENST00000272322 PLPPR3Q6T4P5 718 aa21.69■■□□□ 1.06
VPS54-201ENST00000272322 CD109Q6YHK3 1445 aa21.69■■□□□ 1.06
VPS54-201ENST00000272322 U2AF1L5P0DN76 240 aaPredicted RBP21.68■■□□□ 1.06
VPS54-201ENST00000272322 U2AF1Q01081 240 aaKnown RBP eCLIP21.68■■□□□ 1.067e-7■■■■□ 23.3
VPS54-201ENST00000272322 GGNBP2Q9H3C7 697 aa21.68■■□□□ 1.06
VPS54-201ENST00000272322 TNNQ9UQP3 1299 aa21.68■■□□□ 1.06
VPS54-201ENST00000272322 RTEL1-TNFRSF6BF6WH68 1400 aa21.68■■□□□ 1.06
VPS54-201ENST00000272322 FBXO31Q5XUX0 539 aaPredicted RBP21.68■■□□□ 1.06
VPS54-201ENST00000272322 CLASP1Q7Z460 1538 aa21.68■■□□□ 1.06
VPS54-201ENST00000272322 DEKP35659 375 aaKnown RBP21.68■■□□□ 1.06
VPS54-201ENST00000272322 BACH2Q9BYV9 841 aa21.68■■□□□ 1.06
VPS54-201ENST00000272322 IDI1Q13907 227 aa21.67■■□□□ 1.06
VPS54-201ENST00000272322 PTPRTO14522 1441 aa21.67■■□□□ 1.06
VPS54-201ENST00000272322 BLMP54132 1417 aaPredicted RBP21.67■■□□□ 1.06
VPS54-201ENST00000272322 UHRF1BP1LA0JNW5 1464 aa21.67■■□□□ 1.06
VPS54-201ENST00000272322 NSD3Q9BZ95 1437 aa21.66■■□□□ 1.06
VPS54-201ENST00000272322 EIF2AK4Q9P2K8 1649 aaKnown RBP21.65■■□□□ 1.06
VPS54-201ENST00000272322 RTL5Q5HYW3 569 aaPredicted RBP21.65■■□□□ 1.06
VPS54-201ENST00000272322 TCP11L2Q8N4U5 519 aa21.65■■□□□ 1.06
VPS54-201ENST00000272322 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.65■■□□□ 1.06
VPS54-201ENST00000272322 MADDQ8WXG6 1647 aa21.63■■□□□ 1.05
VPS54-201ENST00000272322 TRPM2O94759 1503 aa21.63■■□□□ 1.05
VPS54-201ENST00000272322 ASXL1Q8IXJ9 1541 aa21.63■■□□□ 1.05
VPS54-201ENST00000272322 WWC1Q8IX03 1113 aa21.63■■□□□ 1.05
VPS54-201ENST00000272322 POGKQ9P215 609 aa21.62■■□□□ 1.05
VPS54-201ENST00000272322 ERVK-7P63135 1459 aa21.61■■□□□ 1.05
VPS54-201ENST00000272322 C14orf93Q9H972 538 aaKnown RBP21.61■■□□□ 1.05
VPS54-201ENST00000272322 NPATQ14207 1427 aa21.6■■□□□ 1.05
VPS54-201ENST00000272322 ZNF521Q96K83 1311 aa21.59■■□□□ 1.05
VPS54-201ENST00000272322 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.59■■□□□ 1.053e-7■■■□□ 15.1
VPS54-201ENST00000272322 STAC3Q96MF2 364 aa21.59■■□□□ 1.05
VPS54-201ENST00000272322 IGHDP01880 384 aa21.58■■□□□ 1.05
VPS54-201ENST00000272322 TSR2Q969E8 191 aaKnown RBP21.58■■□□□ 1.05
VPS54-201ENST00000272322 E9PSI1 815 aa21.58■■□□□ 1.04
VPS54-201ENST00000272322 DAXXQ9UER7 740 aaPredicted RBP21.57■■□□□ 1.04
VPS54-201ENST00000272322 NEFMP07197 916 aa21.56■■□□□ 1.04
VPS54-201ENST00000272322 ZMYM4Q5VZL5 1548 aa21.56■■□□□ 1.04
VPS54-201ENST00000272322 VGFO15240 615 aaPredicted RBP21.56■■□□□ 1.04
VPS54-201ENST00000272322 PRAM1Q96QH2 718 aa21.56■■□□□ 1.04
VPS54-201ENST00000272322 SPHKAPQ2M3C7 1700 aa21.55■■□□□ 1.04
VPS54-201ENST00000272322 CGNL1Q0VF96 1302 aa21.53■■□□□ 1.04
VPS54-201ENST00000272322 CENPQQ7L2Z9 268 aaPredicted RBP21.53■■□□□ 1.04
VPS54-201ENST00000272322 CFAP53Q96M91 514 aa21.53■■□□□ 1.04
VPS54-201ENST00000272322 NUTM2FA1L443 756 aa21.52■■□□□ 1.04
VPS54-201ENST00000272322 ZNF518AQ6AHZ1 1483 aa21.52■■□□□ 1.04
VPS54-201ENST00000272322 EVC2Q86UK5 1308 aa21.52■■□□□ 1.04
VPS54-201ENST00000272322 FAM69CQ0P6D2 419 aa21.52■■□□□ 1.03
VPS54-201ENST00000272322 WAPLQ7Z5K2 1190 aa21.52■■□□□ 1.03
VPS54-201ENST00000272322 RUNDC1Q96C34 613 aa21.51■■□□□ 1.03
VPS54-201ENST00000272322 RLBP1P12271 317 aa21.5■■□□□ 1.03
VPS54-201ENST00000272322 PIK3C2GO75747 1445 aa21.49■■□□□ 1.03
VPS54-201ENST00000272322 MS4A1P11836 297 aa21.49■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms