RNA–Protein interactions for RNA: ENST00000257290.9

PDGFRA-201, Transcript of platelet derived growth factor receptor alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDGFRA, Length 6,576 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-201ENST00000257290 PDE4AP27815 886 aa8.3□□□□□ -1.08
PDGFRA-201ENST00000257290 GRIN2BQ13224 1484 aa8.3□□□□□ -1.08
PDGFRA-201ENST00000257290 LRCH2Q5VUJ6 765 aa8.3□□□□□ -1.08
PDGFRA-201ENST00000257290 WASHC2AQ641Q2 1341 aa8.3□□□□□ -1.08
PDGFRA-201ENST00000257290 ERICH4A6NGS2 130 aa8.3□□□□□ -1.08
PDGFRA-201ENST00000257290 MRS2Q9HD23 443 aa8.3□□□□□ -1.08
PDGFRA-201ENST00000257290 HMGB1P1B2RPK0 211 aaPredicted RBP8.29□□□□□ -1.08
PDGFRA-201ENST00000257290 SLC26A8Q96RN1 970 aa8.29□□□□□ -1.08
PDGFRA-201ENST00000257290 CT47A1Q5JQC4 288 aaPredicted RBP8.29□□□□□ -1.08
PDGFRA-201ENST00000257290 PES1O00541 588 aaKnown RBP8.29□□□□□ -1.08
PDGFRA-201ENST00000257290 CERS3Q8IU89 383 aa8.29□□□□□ -1.08
PDGFRA-201ENST00000257290 CCDC97Q96F63 343 aaPredicted RBP8.28□□□□□ -1.08
PDGFRA-201ENST00000257290 HSP90AB1P08238 724 aaKnown RBP8.28□□□□□ -1.08
PDGFRA-201ENST00000257290 MS4A1P11836 297 aa8.28□□□□□ -1.08
PDGFRA-201ENST00000257290 SASS6Q6UVJ0 657 aa8.28□□□□□ -1.08
PDGFRA-201ENST00000257290 DMTNQ08495 405 aa8.28□□□□□ -1.08
PDGFRA-201ENST00000257290 ZSCAN30Q86W11 494 aa8.28□□□□□ -1.08
PDGFRA-201ENST00000257290 CCDC39Q9UFE4 941 aa8.28□□□□□ -1.08
PDGFRA-201ENST00000257290 POLA1P09884 1462 aaPredicted RBP8.28□□□□□ -1.08
PDGFRA-201ENST00000257290 CPSF2Q9P2I0 782 aaKnown RBP8.27□□□□□ -1.08
PDGFRA-201ENST00000257290 STAG3Q9UJ98 1225 aa8.27□□□□□ -1.08
PDGFRA-201ENST00000257290 PRXQ9BXM0 1461 aa8.27□□□□□ -1.09
PDGFRA-201ENST00000257290 CHGAP10645 457 aaKnown RBP8.27□□□□□ -1.09
PDGFRA-201ENST00000257290 LEKR1Q6ZMV7 388 aa8.27□□□□□ -1.09
PDGFRA-201ENST00000257290 EFCAB5A4FU69 1503 aa8.27□□□□□ -1.09
PDGFRA-201ENST00000257290 AK7Q96M32 723 aa8.26□□□□□ -1.09
PDGFRA-201ENST00000257290 CCDC34Q96HJ3 373 aa8.26□□□□□ -1.09
PDGFRA-201ENST00000257290 MYCNP04198 464 aaPredicted RBP8.26□□□□□ -1.09
PDGFRA-201ENST00000257290 TMC1Q8TDI8 760 aa8.26□□□□□ -1.09
PDGFRA-201ENST00000257290 BIVM-ERCC5R4GMW8 1640 aa8.26□□□□□ -1.09
PDGFRA-201ENST00000257290 AQRO60306 1485 aaKnown RBP eCLIP8.26□□□□□ -1.09
PDGFRA-201ENST00000257290 TRERF1Q96PN7 1200 aa8.26□□□□□ -1.09
PDGFRA-201ENST00000257290 CWC22Q9HCG8 908 aaKnown RBP8.26□□□□□ -1.09
PDGFRA-201ENST00000257290 FRAT2O75474 233 aaPredicted RBP8.26□□□□□ -1.09
PDGFRA-201ENST00000257290 TPM3P06753 285 aa8.26□□□□□ -1.09
PDGFRA-201ENST00000257290 JPH4Q96JJ6 628 aa8.26□□□□□ -1.09
PDGFRA-201ENST00000257290 ABCA10Q8WWZ4 1543 aa8.25□□□□□ -1.09
PDGFRA-201ENST00000257290 VGFO15240 615 aaPredicted RBP8.25□□□□□ -1.09
PDGFRA-201ENST00000257290 EIF4G2P78344 907 aaKnown RBP eCLIP8.25□□□□□ -1.09
PDGFRA-201ENST00000257290 DRC7Q8IY82 874 aa8.25□□□□□ -1.09
PDGFRA-201ENST00000257290 ARGLU1Q9NWB6 273 aaPredicted RBP8.25□□□□□ -1.09
PDGFRA-201ENST00000257290 SYAP1Q96A49 352 aaPredicted RBP8.25□□□□□ -1.09
PDGFRA-201ENST00000257290 RASSF4Q9H2L5 321 aa8.25□□□□□ -1.09
PDGFRA-201ENST00000257290 GOLGA6L19H0YKK7 550 aa8.24□□□□□ -1.09
PDGFRA-201ENST00000257290 SLC4A3P48751 1232 aa8.24□□□□□ -1.09
PDGFRA-201ENST00000257290 ZRSR2Q15696 482 aaKnown RBP8.24□□□□□ -1.09
PDGFRA-201ENST00000257290 EFCC1Q9HA90 598 aa8.24□□□□□ -1.09
PDGFRA-201ENST00000257290 TOMM22Q9NS69 142 aa8.24□□□□□ -1.09
PDGFRA-201ENST00000257290 NASPP49321 788 aaPredicted RBP8.24□□□□□ -1.09
PDGFRA-201ENST00000257290 ARMCX6Q7L4S7 300 aa8.24□□□□□ -1.09
PDGFRA-201ENST00000257290 PIK3R5Q8WYR1 880 aa8.24□□□□□ -1.09
PDGFRA-201ENST00000257290 CASKIN1Q8WXD9 1431 aa8.23□□□□□ -1.09
PDGFRA-201ENST00000257290 KANK1Q14678 1352 aa8.23□□□□□ -1.09
PDGFRA-201ENST00000257290 TPM4P67936 248 aa8.23□□□□□ -1.09
PDGFRA-201ENST00000257290 SMC4Q9NTJ3 1288 aa8.23□□□□□ -1.09
PDGFRA-201ENST00000257290 ZNF853P0CG23 659 aa8.23□□□□□ -1.09
PDGFRA-201ENST00000257290 ANKRD30AQ9BXX3 1397 aa8.23□□□□□ -1.09
PDGFRA-201ENST00000257290 HDAC1Q13547 482 aaPredicted RBP8.23□□□□□ -1.09
PDGFRA-201ENST00000257290 DYDC1Q8WWB3 177 aa8.23□□□□□ -1.09
PDGFRA-201ENST00000257290 GRPEL1Q9HAV7 217 aa8.23□□□□□ -1.09
PDGFRA-201ENST00000257290 CUL7Q14999 1698 aa8.22□□□□□ -1.09
PDGFRA-201ENST00000257290 TERF1P54274 439 aa8.22□□□□□ -1.09
PDGFRA-201ENST00000257290 RGS22Q8NE09 1264 aa8.22□□□□□ -1.09
PDGFRA-201ENST00000257290 FYCO1Q9BQS8 1478 aa8.22□□□□□ -1.09
PDGFRA-201ENST00000257290 HSPA5P11021 654 aaKnown RBP8.22□□□□□ -1.09
PDGFRA-201ENST00000257290 RAB3GAP2Q9H2M9 1393 aa8.22□□□□□ -1.09
PDGFRA-201ENST00000257290 GOLGA6L10A6NI86 522 aa8.22□□□□□ -1.09
PDGFRA-201ENST00000257290 NBPF6Q5VWK0 638 aa8.22□□□□□ -1.09
PDGFRA-201ENST00000257290 NBPF5PQ86XG9 351 aaPredicted RBP8.22□□□□□ -1.09
PDGFRA-201ENST00000257290 NBPF4Q96M43 638 aa8.22□□□□□ -1.09
PDGFRA-201ENST00000257290 KDM2AQ9Y2K7 1162 aa8.22□□□□□ -1.09
PDGFRA-201ENST00000257290 GOLGA6L4A6NEF3 574 aa8.21□□□□□ -1.09
PDGFRA-201ENST00000257290 SPRYD3Q8NCJ5 442 aa8.21□□□□□ -1.09
PDGFRA-201ENST00000257290 PUS7Q96PZ0 661 aaKnown RBP8.21□□□□□ -1.09
PDGFRA-201ENST00000257290 PTPRGP23470 1445 aa8.21□□□□□ -1.09
PDGFRA-201ENST00000257290 ANKRD20A12PQ8NF67 263 aa8.21□□□□□ -1.09
PDGFRA-201ENST00000257290 RRAGDQ9NQL2 400 aaPredicted RBP8.21□□□□□ -1.1
PDGFRA-201ENST00000257290 TTC36A6NLP5 189 aa8.21□□□□□ -1.1
PDGFRA-201ENST00000257290 ZNF830Q96NB3 372 aaPredicted RBP8.2□□□□□ -1.1
PDGFRA-201ENST00000257290 AP1ARQ63HQ0 302 aa8.2□□□□□ -1.1
PDGFRA-201ENST00000257290 SATB1Q01826 763 aa8.2□□□□□ -1.1
PDGFRA-201ENST00000257290 HSP90AB4PQ58FF6 505 aa8.2□□□□□ -1.1
PDGFRA-201ENST00000257290 EFCAB2Q5VUJ9 269 aa8.2□□□□□ -1.1
PDGFRA-201ENST00000257290 ARAP1Q96P48 1450 aa8.2□□□□□ -1.1
PDGFRA-201ENST00000257290 RPAINQ86UA6 219 aa8.2□□□□□ -1.1
PDGFRA-201ENST00000257290 NUCKS1Q9H1E3 243 aaKnown RBP8.19□□□□□ -1.1
PDGFRA-201ENST00000257290 MFAP1P55081 439 aaKnown RBP8.19□□□□□ -1.1
PDGFRA-201ENST00000257290 LRRC9Q6ZRR7 1453 aa8.19□□□□□ -1.1
PDGFRA-201ENST00000257290 TPM1P09493 284 aa8.19□□□□□ -1.1
PDGFRA-201ENST00000257290 ACBD3Q9H3P7 528 aa8.19□□□□□ -1.1
PDGFRA-201ENST00000257290 CEP83Q9Y592 693 aa8.19□□□□□ -1.1
PDGFRA-201ENST00000257290 WDR78Q5VTH9 848 aa8.18□□□□□ -1.1
PDGFRA-201ENST00000257290 CCDC191Q8NCU4 936 aa8.18□□□□□ -1.1
PDGFRA-201ENST00000257290 DNAAF4Q8WXU2 420 aa8.18□□□□□ -1.1
PDGFRA-201ENST00000257290 ATP6V1AP38606 617 aa8.18□□□□□ -1.1
PDGFRA-201ENST00000257290 TTC31Q49AM3 519 aaPredicted RBP8.18□□□□□ -1.1
PDGFRA-201ENST00000257290 LMOD2Q6P5Q4 547 aa8.18□□□□□ -1.1
PDGFRA-201ENST00000257290 SIN3AQ96ST3 1273 aa8.18□□□□□ -1.1
PDGFRA-201ENST00000257290 SNAPC4Q5SXM2 1469 aa8.18□□□□□ -1.1
PDGFRA-201ENST00000257290 FAM107BQ9H098 131 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 73.4 ms