RNA–Protein interactions for RNA: ENST00000216513.4

SIX4-201, Transcript of SIX homeobox 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SIX4, Length 6,285 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-201ENST00000216513 GPATCH3Q96I76 525 aa17.32■□□□□ 0.36
SIX4-201ENST00000216513 FGD6Q6ZV73 1430 aa17.31■□□□□ 0.36
SIX4-201ENST00000216513 ZC3H6P61129 1189 aaKnown RBP17.31■□□□□ 0.36
SIX4-201ENST00000216513 MAGI1Q96QZ7 1491 aaPredicted RBP17.31■□□□□ 0.36
SIX4-201ENST00000216513 NOL10Q9BSC4 688 aaKnown RBP17.3■□□□□ 0.36
SIX4-201ENST00000216513 GRIN2AQ12879 1464 aa17.3■□□□□ 0.36
SIX4-201ENST00000216513 CLUAP1Q96AJ1 413 aa17.3■□□□□ 0.36
SIX4-201ENST00000216513 HSPA2P54652 639 aa17.3■□□□□ 0.36
SIX4-201ENST00000216513 DNTTIP2Q5QJE6 756 aaKnown RBP17.3■□□□□ 0.36
SIX4-201ENST00000216513 AIMP1Q12904 312 aaKnown RBP17.3■□□□□ 0.36
SIX4-201ENST00000216513 VPS53Q5VIR6 699 aa17.3■□□□□ 0.36
SIX4-201ENST00000216513 MIA2Q96PC5 1412 aa17.29■□□□□ 0.36
SIX4-201ENST00000216513 HSP90AB1P08238 724 aaKnown RBP17.29■□□□□ 0.36
SIX4-201ENST00000216513 CTDP1Q9Y5B0 961 aaPredicted RBP17.29■□□□□ 0.36
SIX4-201ENST00000216513 FOXD4L1Q9NU39 408 aa17.29■□□□□ 0.36
SIX4-201ENST00000216513 FYCO1Q9BQS8 1478 aa17.29■□□□□ 0.36
SIX4-201ENST00000216513 NLRP13Q86W25 1043 aa17.29■□□□□ 0.36
SIX4-201ENST00000216513 TOM1O60784 492 aa17.28■□□□□ 0.36
SIX4-201ENST00000216513 TATP17735 454 aaPredicted RBP17.28■□□□□ 0.36
SIX4-201ENST00000216513 FBXO31Q5XUX0 539 aaPredicted RBP17.28■□□□□ 0.36
SIX4-201ENST00000216513 C9orf84Q5VXU9 1444 aa17.28■□□□□ 0.36
SIX4-201ENST00000216513 MCCP23508 829 aa17.27■□□□□ 0.36
SIX4-201ENST00000216513 ADGRL1O94910 1474 aa17.27■□□□□ 0.36
SIX4-201ENST00000216513 TRIM6-TRIM34B2RNG4 842 aa17.27■□□□□ 0.36
SIX4-201ENST00000216513 TROQ12816 1431 aaPredicted RBP17.27■□□□□ 0.36
SIX4-201ENST00000216513 SAMD1Q6SPF0 538 aaPredicted RBP17.27■□□□□ 0.35
SIX4-201ENST00000216513 DDRGK1Q96HY6 314 aa17.27■□□□□ 0.35
SIX4-201ENST00000216513 PPP4R2Q9NY27 417 aa17.27■□□□□ 0.35
SIX4-201ENST00000216513 C9orf78Q9NZ63 289 aaPredicted RBP17.27■□□□□ 0.35
SIX4-201ENST00000216513 CDK19Q9BWU1 502 aa17.26■□□□□ 0.35
SIX4-201ENST00000216513 URB2Q14146 1524 aaKnown RBP17.26■□□□□ 0.35
SIX4-201ENST00000216513 GZF1Q9H116 711 aaPredicted RBP17.26■□□□□ 0.35
SIX4-201ENST00000216513 AKNAQ7Z591 1439 aa17.26■□□□□ 0.35
SIX4-201ENST00000216513 WASHC2AQ641Q2 1341 aa17.26■□□□□ 0.35
SIX4-201ENST00000216513 NOL8Q76FK4 1167 aaKnown RBP17.25■□□□□ 0.35
SIX4-201ENST00000216513 ANP32EQ9BTT0 268 aa17.25■□□□□ 0.35
SIX4-201ENST00000216513 ARHGEF11O15085 1522 aa17.25■□□□□ 0.35
SIX4-201ENST00000216513 PLB1Q6P1J6 1458 aa17.25■□□□□ 0.35
SIX4-201ENST00000216513 TCERG1O14776 1098 aaKnown RBP17.24■□□□□ 0.35
SIX4-201ENST00000216513 NOP58Q9Y2X3 529 aaKnown RBP17.24■□□□□ 0.35
SIX4-201ENST00000216513 HMMRO75330 724 aa17.24■□□□□ 0.35
SIX4-201ENST00000216513 USP47Q96K76 1375 aa17.24■□□□□ 0.35
SIX4-201ENST00000216513 SMG6Q86US8 1419 aaKnown RBP17.23■□□□□ 0.35
SIX4-201ENST00000216513 IQGAP2Q13576 1575 aa17.23■□□□□ 0.35
SIX4-201ENST00000216513 GLIPR1L2Q4G1C9 344 aa17.23■□□□□ 0.35
SIX4-201ENST00000216513 RRBP1Q9P2E9 1410 aaKnown RBP17.23■□□□□ 0.35
SIX4-201ENST00000216513 ANO8Q9HCE9 1232 aaPredicted RBP17.23■□□□□ 0.35
SIX4-201ENST00000216513 PHLDB1Q86UU1 1377 aa17.23■□□□□ 0.35
SIX4-201ENST00000216513 DDX58O95786 925 aaKnown RBP17.23■□□□□ 0.35
SIX4-201ENST00000216513 TSPYL4Q9UJ04 414 aa17.23■□□□□ 0.35
SIX4-201ENST00000216513 CDK13Q14004 1512 aaKnown RBP17.22■□□□□ 0.35
SIX4-201ENST00000216513 NAP1L5Q96NT1 182 aaPredicted RBP17.22■□□□□ 0.35
SIX4-201ENST00000216513 GOLGA6L22H0YM25 854 aa17.22■□□□□ 0.35
SIX4-201ENST00000216513 HECW1Q76N89 1606 aa17.22■□□□□ 0.35
SIX4-201ENST00000216513 TOP2BQ02880 1626 aa17.21■□□□□ 0.35
SIX4-201ENST00000216513 LRRC9Q6ZRR7 1453 aa17.21■□□□□ 0.35
SIX4-201ENST00000216513 RIC3Q7Z5B4 369 aa17.21■□□□□ 0.35
SIX4-201ENST00000216513 SLKQ9H2G2 1235 aaPredicted RBP17.21■□□□□ 0.35
SIX4-201ENST00000216513 DENND4BO75064 1496 aaPredicted RBP17.21■□□□□ 0.35
SIX4-201ENST00000216513 CABP4P57796 275 aa17.21■□□□□ 0.34
SIX4-201ENST00000216513 PLEKHO1Q53GL0 409 aaPredicted RBP17.21■□□□□ 0.34
SIX4-201ENST00000216513 CABP1Q9NZU7 370 aa17.2■□□□□ 0.34
SIX4-201ENST00000216513 RIPK4P57078 832 aa17.2■□□□□ 0.34
SIX4-201ENST00000216513 PLIN1O60240 522 aa17.19■□□□□ 0.34
SIX4-201ENST00000216513 BCL2L13Q9BXK5 485 aa17.19■□□□□ 0.34
SIX4-201ENST00000216513 ABCA10Q8WWZ4 1543 aa17.19■□□□□ 0.34
SIX4-201ENST00000216513 AMOTL1Q8IY63 956 aa17.19■□□□□ 0.34
SIX4-201ENST00000216513 ERICH6BQ5W0A0 696 aa17.18■□□□□ 0.34
SIX4-201ENST00000216513 KIF6Q6ZMV9 814 aa17.18■□□□□ 0.34
SIX4-201ENST00000216513 RTEL1-TNFRSF6BF6WH68 1400 aa17.18■□□□□ 0.34
SIX4-201ENST00000216513 FOXO3O43524 673 aa17.18■□□□□ 0.34
SIX4-201ENST00000216513 HSP90B1P14625 803 aaKnown RBP17.18■□□□□ 0.34
SIX4-201ENST00000216513 FOXD4L5Q5VV16 416 aaPredicted RBP17.18■□□□□ 0.34
SIX4-201ENST00000216513 FOXD4L4Q8WXT5 416 aaPredicted RBP17.18■□□□□ 0.34
SIX4-201ENST00000216513 ERBINQ96RT1 1412 aa17.18■□□□□ 0.34
SIX4-201ENST00000216513 AMOTL2Q9Y2J4 779 aa17.17■□□□□ 0.34
SIX4-201ENST00000216513 RBM19Q9Y4C8 960 aaKnown RBP17.17■□□□□ 0.34
SIX4-201ENST00000216513 BICDL1Q6ZP65 573 aa17.16■□□□□ 0.34
SIX4-201ENST00000216513 EPRSP07814 1512 aaKnown RBP17.16■□□□□ 0.34
SIX4-201ENST00000216513 KIF21BO75037 1637 aa17.16■□□□□ 0.34
SIX4-201ENST00000216513 FKBP5Q13451 457 aaPredicted RBP17.16■□□□□ 0.34
SIX4-201ENST00000216513 GOLGA6L4A6NEF3 574 aa17.15■□□□□ 0.34
SIX4-201ENST00000216513 WAPLQ7Z5K2 1190 aa17.15■□□□□ 0.34
SIX4-201ENST00000216513 STAC3Q96MF2 364 aa17.15■□□□□ 0.34
SIX4-201ENST00000216513 MARCH6O60337 910 aa17.14■□□□□ 0.34
SIX4-201ENST00000216513 C8orf37Q96NL8 207 aa17.14■□□□□ 0.34
SIX4-201ENST00000216513 SPG7Q9UQ90 795 aa17.14■□□□□ 0.34
SIX4-201ENST00000216513 EFCAB5A4FU69 1503 aa17.14■□□□□ 0.34
SIX4-201ENST00000216513 ZNF428Q96B54 188 aa17.14■□□□□ 0.33
SIX4-201ENST00000216513 TEX14Q8IWB6 1497 aa17.14■□□□□ 0.33
SIX4-201ENST00000216513 SLC4A3P48751 1232 aa17.13■□□□□ 0.33
SIX4-201ENST00000216513 FANCAO15360 1455 aa17.12■□□□□ 0.33
SIX4-201ENST00000216513 RWDD1Q9H446 243 aaPredicted RBP17.12■□□□□ 0.33
SIX4-201ENST00000216513 RCAN3Q9UKA8 241 aa17.12■□□□□ 0.33
SIX4-201ENST00000216513 ASXL2Q76L83 1435 aa17.11■□□□□ 0.33
SIX4-201ENST00000216513 FYB1O15117 783 aa17.11■□□□□ 0.33
SIX4-201ENST00000216513 ZNF692Q9BU19 519 aaPredicted RBP17.11■□□□□ 0.33
SIX4-201ENST00000216513 EHBP1L1Q8N3D4 1523 aa17.11■□□□□ 0.33
SIX4-201ENST00000216513 MFAP1P55081 439 aaKnown RBP17.11■□□□□ 0.33
SIX4-201ENST00000216513 BCL11BQ9C0K0 894 aaPredicted RBP17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms