RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 CCDC195A0A1B0GUA6 201 aa12.66□□□□□ -0.38
CLN3-257ENST00000637110 KRBA1A5PL33 1030 aa12.66□□□□□ -0.38
CLN3-257ENST00000637110 MYMKA6NI61 221 aa12.66□□□□□ -0.38
CLN3-257ENST00000637110 I3L4J1 428 aa12.66□□□□□ -0.38
CLN3-257ENST00000637110 SPTLC1O15269 473 aa12.66□□□□□ -0.38
CLN3-257ENST00000637110 TGM5O43548 720 aa12.66□□□□□ -0.38
CLN3-257ENST00000637110 YEATS4O95619 227 aa12.66□□□□□ -0.38
CLN3-257ENST00000637110 EFEMP2O95967 443 aa12.66□□□□□ -0.38
CLN3-257ENST00000637110 CXCL8P10145 99 aa12.66□□□□□ -0.38
CLN3-257ENST00000637110 KCNE1P15382 129 aa12.66□□□□□ -0.38
CLN3-257ENST00000637110 GAP43P17677 238 aa12.66□□□□□ -0.38
CLN3-257ENST00000637110 BRCC3P46736 316 aa12.66□□□□□ -0.38
CLN3-257ENST00000637110 PPP2R3AQ06190 1150 aa12.66□□□□□ -0.38
CLN3-257ENST00000637110 SPAG1Q07617 926 aa12.66□□□□□ -0.38
CLN3-257ENST00000637110 KYAT1Q16773 422 aa12.66□□□□□ -0.38
CLN3-257ENST00000637110 UPP1Q16831 310 aa12.66□□□□□ -0.38
CLN3-257ENST00000637110 SLC10A6Q3KNW5 377 aa12.66□□□□□ -0.38
CLN3-257ENST00000637110 PHLDB3Q6NSJ2 640 aa12.66□□□□□ -0.38
CLN3-257ENST00000637110 ALKAL1Q6UXT8 129 aa12.66□□□□□ -0.38
CLN3-257ENST00000637110 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.66□□□□□ -0.38
CLN3-257ENST00000637110 GPR149Q86SP6 731 aa12.66□□□□□ -0.38
CLN3-257ENST00000637110 STAMQ92783 540 aa12.66□□□□□ -0.38
CLN3-257ENST00000637110 C18orf25Q96B23 403 aaPredicted RBP12.66□□□□□ -0.38
CLN3-257ENST00000637110 DHX58Q96C10 678 aa12.66□□□□□ -0.38
CLN3-257ENST00000637110 KIF12Q96FN5 646 aa12.66□□□□□ -0.38
CLN3-257ENST00000637110 ZMAT2Q96NC0 199 aaKnown RBP12.66□□□□□ -0.38
CLN3-257ENST00000637110 RPF1Q9H9Y2 349 aaKnown RBP12.66□□□□□ -0.38
CLN3-257ENST00000637110 CNTN3Q9P232 1028 aa12.66□□□□□ -0.38
CLN3-257ENST00000637110 FNIP2Q9P278 1114 aa12.66□□□□□ -0.38
CLN3-257ENST00000637110 CFAP45Q9UL16 551 aa12.66□□□□□ -0.38
CLN3-257ENST00000637110 CA14Q9ULX7 337 aa12.66□□□□□ -0.38
CLN3-257ENST00000637110 USP24Q9UPU5 2620 aa12.66□□□□□ -0.38
CLN3-257ENST00000637110 GPR179Q6PRD1 2367 aa12.65□□□□□ -0.38
CLN3-257ENST00000637110 C2orf16Q68DN1 1984 aa12.65□□□□□ -0.38
CLN3-257ENST00000637110 OGTO15294 1046 aa12.65□□□□□ -0.38
CLN3-257ENST00000637110 NARSO43776 548 aaKnown RBP12.65□□□□□ -0.38
CLN3-257ENST00000637110 CUTAO60888 179 aa12.65□□□□□ -0.38
CLN3-257ENST00000637110 GCNT3O95395 438 aa12.65□□□□□ -0.38
CLN3-257ENST00000637110 DCNP07585 359 aaKnown RBP12.65□□□□□ -0.38
CLN3-257ENST00000637110 ADRB1P08588 477 aa12.65□□□□□ -0.38
CLN3-257ENST00000637110 SRFP11831 508 aa12.65□□□□□ -0.38
CLN3-257ENST00000637110 RPL9P32969 192 aaKnown RBP12.65□□□□□ -0.38
CLN3-257ENST00000637110 MCM4P33991 863 aa12.65□□□□□ -0.38
CLN3-257ENST00000637110 TNFSF9P41273 254 aa12.65□□□□□ -0.38
CLN3-257ENST00000637110 ME1P48163 572 aa12.65□□□□□ -0.38
CLN3-257ENST00000637110 GTF2BQ00403 316 aa12.65□□□□□ -0.38
CLN3-257ENST00000637110 SOX4Q06945 474 aaPredicted RBP12.65□□□□□ -0.38
CLN3-257ENST00000637110 XKR4Q5GH76 650 aa12.65□□□□□ -0.38
CLN3-257ENST00000637110 LIN9Q5TKA1 542 aa12.65□□□□□ -0.38
CLN3-257ENST00000637110 ADALQ6DHV7 355 aa12.65□□□□□ -0.38
CLN3-257ENST00000637110 SLFN12LQ6IEE8 588 aa12.65□□□□□ -0.38
CLN3-257ENST00000637110 C15orf39Q6ZRI6 1047 aa12.65□□□□□ -0.38
CLN3-257ENST00000637110 GPR65Q8IYL9 337 aa12.65□□□□□ -0.38
CLN3-257ENST00000637110 SYCP3Q8IZU3 236 aa12.65□□□□□ -0.38
CLN3-257ENST00000637110 LNX1Q8TBB1 728 aaPredicted RBP12.65□□□□□ -0.38
CLN3-257ENST00000637110 PIK3R5Q8WYR1 880 aa12.65□□□□□ -0.38
CLN3-257ENST00000637110 NXPE3Q969Y0 559 aa12.65□□□□□ -0.38
CLN3-257ENST00000637110 LRRC27Q9C0I9 530 aa12.65□□□□□ -0.38
CLN3-257ENST00000637110 HAPLN2Q9GZV7 340 aa12.65□□□□□ -0.38
CLN3-257ENST00000637110 PLEKHA4Q9H4M7 779 aa12.65□□□□□ -0.38
CLN3-257ENST00000637110 PLEKHA5Q9HAU0 1116 aa12.65□□□□□ -0.38
CLN3-257ENST00000637110 PANK4Q9NVE7 773 aa12.65□□□□□ -0.38
CLN3-257ENST00000637110 FAM13BQ9NYF5 915 aa12.65□□□□□ -0.38
CLN3-257ENST00000637110 EXOC7Q9UPT5 735 aa12.65□□□□□ -0.38
CLN3-257ENST00000637110 MORC2Q9Y6X9 1032 aaPredicted RBP12.65□□□□□ -0.38
CLN3-257ENST00000637110 FAM208BQ5VWN6 2430 aa12.64□□□□□ -0.39
CLN3-257ENST00000637110 CITO14578 2027 aa12.64□□□□□ -0.39
CLN3-257ENST00000637110 A0A087X0B3 334 aa12.64□□□□□ -0.39
CLN3-257ENST00000637110 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.64□□□□□ -0.39
CLN3-257ENST00000637110 LACTBL1A8MY62 500 aa12.64□□□□□ -0.39
CLN3-257ENST00000637110 TMEM189-UBE2V1I3L0A0 370 aa12.64□□□□□ -0.39
CLN3-257ENST00000637110 XPOTO43592 962 aaKnown RBP12.64□□□□□ -0.39
CLN3-257ENST00000637110 RFPL2O75678 378 aa12.64□□□□□ -0.39
CLN3-257ENST00000637110 PIGRP01833 764 aa12.64□□□□□ -0.39
CLN3-257ENST00000637110 FGFR3P22607 806 aa12.64□□□□□ -0.39
CLN3-257ENST00000637110 IGFBP6P24592 240 aaPredicted RBP12.64□□□□□ -0.39
CLN3-257ENST00000637110 TKTP29401 623 aaKnown RBP12.64□□□□□ -0.39
CLN3-257ENST00000637110 OR1D2P34982 312 aa12.64□□□□□ -0.39
CLN3-257ENST00000637110 ARPP19P56211 112 aa12.64□□□□□ -0.39
CLN3-257ENST00000637110 PKP1Q13835 747 aa12.64□□□□□ -0.39
CLN3-257ENST00000637110 ZNF528Q3MIS6 628 aa12.64□□□□□ -0.39
CLN3-257ENST00000637110 ZBTB41Q5SVQ8 909 aa12.64□□□□□ -0.39
CLN3-257ENST00000637110 ANKS3Q6ZW76 656 aa12.64□□□□□ -0.39
CLN3-257ENST00000637110 ZNF720Q7Z2F6 126 aa12.64□□□□□ -0.39
CLN3-257ENST00000637110 MAP4K3Q8IVH8 894 aa12.64□□□□□ -0.39
CLN3-257ENST00000637110 CCDC65Q8IXS2 484 aa12.64□□□□□ -0.39
CLN3-257ENST00000637110 IQUBQ8NA54 791 aa12.64□□□□□ -0.39
CLN3-257ENST00000637110 C3orf58Q8NDZ4 430 aa12.64□□□□□ -0.39
CLN3-257ENST00000637110 NOC3LQ8WTT2 800 aaKnown RBP12.64□□□□□ -0.39
CLN3-257ENST00000637110 POMGNT1Q8WZA1 660 aa12.64□□□□□ -0.39
CLN3-257ENST00000637110 SMG7Q92540 1137 aaKnown RBP12.64□□□□□ -0.39
CLN3-257ENST00000637110 ACCSQ96QU6 501 aa12.64□□□□□ -0.39
CLN3-257ENST00000637110 SEL1LQ9UBV2 794 aa12.64□□□□□ -0.39
CLN3-257ENST00000637110 TUBGCP4Q9UGJ1 667 aa12.64□□□□□ -0.39
CLN3-257ENST00000637110 MIA3Q5JRA6 1907 aa12.64□□□□□ -0.39
CLN3-257ENST00000637110 MYH15Q9Y2K3 1946 aa12.63□□□□□ -0.39
CLN3-257ENST00000637110 A0A0B4J269 797 aa12.63□□□□□ -0.39
CLN3-257ENST00000637110 ANKRD63C9JTQ0 380 aa12.63□□□□□ -0.39
CLN3-257ENST00000637110 GBP2P32456 591 aaPredicted RBP12.63□□□□□ -0.39
CLN3-257ENST00000637110 ACOT2P49753 483 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms