RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 RFFLQ8WZ73 363 aa11.34□□□□□ -0.59
CLN3-248ENST00000636355 TRIM11Q96F44 468 aa11.34□□□□□ -0.59
CLN3-248ENST00000636355 NAPGQ99747 312 aaPredicted RBP11.34□□□□□ -0.59
CLN3-248ENST00000636355 AGPAT1Q99943 283 aa11.34□□□□□ -0.59
CLN3-248ENST00000636355 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.34□□□□□ -0.59
CLN3-248ENST00000636355 LACRTQ9GZZ8 138 aa11.34□□□□□ -0.59
CLN3-248ENST00000636355 APOBEC3GQ9HC16 384 aaKnown RBP11.34□□□□□ -0.59
CLN3-248ENST00000636355 TSKSQ9UJT2 592 aa11.34□□□□□ -0.59
CLN3-248ENST00000636355 UBQLN1Q9UMX0 589 aaKnown RBP11.34□□□□□ -0.59
CLN3-248ENST00000636355 GUCA1BQ9UMX6 200 aa11.34□□□□□ -0.59
CLN3-248ENST00000636355 NOD1Q9Y239 953 aa11.34□□□□□ -0.59
CLN3-248ENST00000636355 PTPN22Q9Y2R2 807 aa11.34□□□□□ -0.59
CLN3-248ENST00000636355 R3HCC1Q9Y3T6 440 aaKnown RBP11.34□□□□□ -0.59
CLN3-248ENST00000636355 PCDHGC5Q9Y5F6 944 aa11.34□□□□□ -0.59
CLN3-248ENST00000636355 GRIN2DO15399 1336 aa11.34□□□□□ -0.59
CLN3-248ENST00000636355 TDRD15B5MCY1 1934 aaKnown RBP11.33□□□□□ -0.6
CLN3-248ENST00000636355 ANKRD62A6NC57 917 aa11.33□□□□□ -0.6
CLN3-248ENST00000636355 CSDE1O75534 798 aaKnown RBP11.33□□□□□ -0.6
CLN3-248ENST00000636355 RECQL4O94761 1208 aa11.33□□□□□ -0.6
CLN3-248ENST00000636355 LSM8O95777 96 aaKnown RBP11.33□□□□□ -0.6
CLN3-248ENST00000636355 SKIP12755 728 aa11.33□□□□□ -0.6
CLN3-248ENST00000636355 CYP11B1P15538 503 aa11.33□□□□□ -0.6
CLN3-248ENST00000636355 ATF7P17544 494 aaPredicted RBP11.33□□□□□ -0.6
CLN3-248ENST00000636355 ACO1P21399 889 aaKnown RBP11.33□□□□□ -0.6
CLN3-248ENST00000636355 PNPLA4P41247 253 aa11.33□□□□□ -0.6
CLN3-248ENST00000636355 ASPAP45381 313 aa11.33□□□□□ -0.6
CLN3-248ENST00000636355 RBP5P82980 135 aa11.33□□□□□ -0.6
CLN3-248ENST00000636355 MYO1EQ12965 1108 aa11.33□□□□□ -0.6
CLN3-248ENST00000636355 ZBTB6Q15916 424 aa11.33□□□□□ -0.6
CLN3-248ENST00000636355 TRIM71Q2Q1W2 868 aaKnown RBP11.33□□□□□ -0.6
CLN3-248ENST00000636355 ZNF667Q5HYK9 610 aa11.33□□□□□ -0.6
CLN3-248ENST00000636355 ZNF569Q5MCW4 686 aa11.33□□□□□ -0.6
CLN3-248ENST00000636355 FBXO47Q5MNV8 452 aa11.33□□□□□ -0.6
CLN3-248ENST00000636355 UBXN11Q5T124 520 aa11.33□□□□□ -0.6
CLN3-248ENST00000636355 CDR2LQ86X02 465 aaPredicted RBP11.33□□□□□ -0.6
CLN3-248ENST00000636355 GLYCTKQ8IVS8 523 aa11.33□□□□□ -0.6
CLN3-248ENST00000636355 RHOT2Q8IXI1 618 aa11.33□□□□□ -0.6
CLN3-248ENST00000636355 TMEM192Q8IY95 271 aa11.33□□□□□ -0.6
CLN3-248ENST00000636355 CXorf38Q8TB03 319 aa11.33□□□□□ -0.6
CLN3-248ENST00000636355 LNX1Q8TBB1 728 aaPredicted RBP11.33□□□□□ -0.6
CLN3-248ENST00000636355 CTNNBL1Q8WYA6 563 aaPredicted RBP11.33□□□□□ -0.6
CLN3-248ENST00000636355 FAM212AQ96EL1 285 aa11.33□□□□□ -0.6
CLN3-248ENST00000636355 ZNF560Q96MR9 790 aa11.33□□□□□ -0.6
CLN3-248ENST00000636355 WDR24Q96S15 920 aa11.33□□□□□ -0.6
CLN3-248ENST00000636355 PI4K2AQ9BTU6 479 aa11.33□□□□□ -0.6
CLN3-248ENST00000636355 ISCUQ9H1K1 167 aa11.33□□□□□ -0.6
CLN3-248ENST00000636355 NXF3Q9H4D5 531 aaKnown RBP11.33□□□□□ -0.6
CLN3-248ENST00000636355 CDHR5Q9HBB8 845 aa11.33□□□□□ -0.6
CLN3-248ENST00000636355 STARD7Q9NQZ5 370 aa11.33□□□□□ -0.6
CLN3-248ENST00000636355 SLC38A7Q9NVC3 462 aa11.33□□□□□ -0.6
CLN3-248ENST00000636355 SIX4Q9UIU6 781 aa11.33□□□□□ -0.6
CLN3-248ENST00000636355 JRKLQ9Y4A0 524 aa11.33□□□□□ -0.6
CLN3-248ENST00000636355 NUB1Q9Y5A7 615 aa11.33□□□□□ -0.6
CLN3-248ENST00000636355 RCCD1A6NED2 376 aa11.32□□□□□ -0.6
CLN3-248ENST00000636355 MEFVO15553 781 aaPredicted RBP11.32□□□□□ -0.6
CLN3-248ENST00000636355 CYP26A1O43174 497 aa11.32□□□□□ -0.6
CLN3-248ENST00000636355 RTN2O75298 545 aa11.32□□□□□ -0.6
CLN3-248ENST00000636355 CHRNA1P02708 482 aa11.32□□□□□ -0.6
CLN3-248ENST00000636355 ITGB3P05106 788 aa11.32□□□□□ -0.6
CLN3-248ENST00000636355 PAEPP09466 180 aa11.32□□□□□ -0.6
CLN3-248ENST00000636355 PNMA6AP0CW24 399 aaPredicted RBP11.32□□□□□ -0.6
CLN3-248ENST00000636355 MYBL1P10243 752 aa11.32□□□□□ -0.6
CLN3-248ENST00000636355 KRT5P13647 590 aa11.32□□□□□ -0.6
CLN3-248ENST00000636355 TNFAIP3P21580 790 aa11.32□□□□□ -0.6
CLN3-248ENST00000636355 FGFR4P22455 802 aa11.32□□□□□ -0.6
CLN3-248ENST00000636355 PAX3P23760 479 aa11.32□□□□□ -0.6
CLN3-248ENST00000636355 MYL6P60660 151 aa11.32□□□□□ -0.6
CLN3-248ENST00000636355 OSTNP61366 133 aa11.32□□□□□ -0.6
CLN3-248ENST00000636355 TUBB4BP68371 445 aa11.32□□□□□ -0.6
CLN3-248ENST00000636355 FMO1Q01740 532 aa11.32□□□□□ -0.6
CLN3-248ENST00000636355 INCA1Q0VD86 236 aa11.32□□□□□ -0.6
CLN3-248ENST00000636355 PAK2Q13177 524 aa11.32□□□□□ -0.6
CLN3-248ENST00000636355 TWF2Q6IBS0 349 aaKnown RBP11.32□□□□□ -0.6
CLN3-248ENST00000636355 NOP9Q86U38 636 aaKnown RBP11.32□□□□□ -0.6
CLN3-248ENST00000636355 RBBP8NLQ8NC74 664 aaPredicted RBP11.32□□□□□ -0.6
CLN3-248ENST00000636355 MYRIPQ8NFW9 859 aa11.32□□□□□ -0.6
CLN3-248ENST00000636355 RSPH1Q8WYR4 309 aa11.32□□□□□ -0.6
CLN3-248ENST00000636355 DDX1Q92499 740 aaKnown RBP11.32□□□□□ -0.6
CLN3-248ENST00000636355 ZNF592Q92610 1267 aa11.32□□□□□ -0.6
CLN3-248ENST00000636355 KAT5Q92993 513 aa11.32□□□□□ -0.6
CLN3-248ENST00000636355 TATDN2Q93075 761 aa11.32□□□□□ -0.6
CLN3-248ENST00000636355 KIF12Q96FN5 646 aa11.32□□□□□ -0.6
CLN3-248ENST00000636355 ARID3AQ99856 593 aa11.32□□□□□ -0.6
CLN3-248ENST00000636355 EIF2AQ9BY44 585 aaKnown RBP11.32□□□□□ -0.6
CLN3-248ENST00000636355 DNAI2Q9GZS0 605 aa11.32□□□□□ -0.6
CLN3-248ENST00000636355 ERVK-5Q9HDB9 667 aa11.32□□□□□ -0.6
CLN3-248ENST00000636355 DPP3Q9NY33 737 aa11.32□□□□□ -0.6
CLN3-248ENST00000636355 NOC2LQ9Y3T9 749 aaKnown RBP11.32□□□□□ -0.6
CLN3-248ENST00000636355 IPPQ9Y573 584 aa11.32□□□□□ -0.6
CLN3-248ENST00000636355 SCN1AP35498 2009 aa11.31□□□□□ -0.6
CLN3-248ENST00000636355 MACROD2A1Z1Q3 448 aa11.31□□□□□ -0.6
CLN3-248ENST00000636355 ARVCFO00192 962 aa11.31□□□□□ -0.6
CLN3-248ENST00000636355 PITPNM1O00562 1244 aa11.31□□□□□ -0.6
CLN3-248ENST00000636355 INPPL1O15357 1258 aa11.31□□□□□ -0.6
CLN3-248ENST00000636355 ZNF623O75123 536 aa11.31□□□□□ -0.6
CLN3-248ENST00000636355 MTA2O94776 668 aa11.31□□□□□ -0.6
CLN3-248ENST00000636355 PARNO95453 639 aaKnown RBP11.31□□□□□ -0.6
CLN3-248ENST00000636355 THPOP40225 353 aa11.31□□□□□ -0.6
CLN3-248ENST00000636355 USP8P40818 1118 aa11.31□□□□□ -0.6
CLN3-248ENST00000636355 CENPCQ03188 943 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms