RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 CYP4X1Q8N118 509 aa11.66□□□□□ -0.54
CLN3-244ENST00000636147 NMD3Q96D46 503 aaKnown RBP11.66□□□□□ -0.54
CLN3-244ENST00000636147 CEP170P1Q96L14 293 aa11.66□□□□□ -0.54
CLN3-244ENST00000636147 RANBP17Q9H2T7 1088 aaKnown RBP11.66□□□□□ -0.54
CLN3-244ENST00000636147 TOPORSQ9NS56 1045 aaPredicted RBP11.66□□□□□ -0.54
CLN3-244ENST00000636147 PCYOX1Q9UHG3 505 aa11.66□□□□□ -0.54
CLN3-244ENST00000636147 ZNF335Q9H4Z2 1342 aaPredicted RBP11.66□□□□□ -0.54
CLN3-244ENST00000636147 MAGEA13PA6NCF6 341 aa11.65□□□□□ -0.54
CLN3-244ENST00000636147 FAM86B1E9PN63 330 aa11.65□□□□□ -0.54
CLN3-244ENST00000636147 GJB6O95452 261 aa11.65□□□□□ -0.54
CLN3-244ENST00000636147 FAM86B2P0C5J1 330 aa11.65□□□□□ -0.54
CLN3-244ENST00000636147 MYL2P10916 166 aa11.65□□□□□ -0.54
CLN3-244ENST00000636147 ETS2P15036 469 aa11.65□□□□□ -0.54
CLN3-244ENST00000636147 CYP11B1P15538 503 aa11.65□□□□□ -0.54
CLN3-244ENST00000636147 TAC1P20366 129 aa11.65□□□□□ -0.54
CLN3-244ENST00000636147 ATP6V1C1P21283 382 aa11.65□□□□□ -0.54
CLN3-244ENST00000636147 SAT1P21673 171 aa11.65□□□□□ -0.54
CLN3-244ENST00000636147 SSTR1P30872 391 aa11.65□□□□□ -0.54
CLN3-244ENST00000636147 PDE1BQ01064 536 aa11.65□□□□□ -0.54
CLN3-244ENST00000636147 PPATQ06203 517 aa11.65□□□□□ -0.54
CLN3-244ENST00000636147 MED21Q13503 144 aa11.65□□□□□ -0.54
CLN3-244ENST00000636147 KIF22Q14807 665 aa11.65□□□□□ -0.54
CLN3-244ENST00000636147 PDCD2Q16342 344 aaPredicted RBP11.65□□□□□ -0.54
CLN3-244ENST00000636147 HADHQ16836 314 aaKnown RBP11.65□□□□□ -0.54
CLN3-244ENST00000636147 LLGL2Q6P1M3 1020 aa11.65□□□□□ -0.54
CLN3-244ENST00000636147 NUDCD3Q8IVD9 361 aa11.65□□□□□ -0.54
CLN3-244ENST00000636147 SNRNP27Q8WVK2 155 aaKnown RBP11.65□□□□□ -0.54
CLN3-244ENST00000636147 GPRC5CQ9NQ84 441 aa11.65□□□□□ -0.54
CLN3-244ENST00000636147 MAGED2Q9UNF1 606 aaPredicted RBP11.65□□□□□ -0.54
CLN3-244ENST00000636147 LTN1O94822 1766 aa11.65□□□□□ -0.54
CLN3-244ENST00000636147 LAMA4Q16363 1823 aa11.65□□□□□ -0.54
CLN3-244ENST00000636147 SMNDC1O75940 238 aaKnown RBP eCLIP11.65□□□□□ -0.54
CLN3-244ENST00000636147 ACADSP16219 412 aa11.65□□□□□ -0.54
CLN3-244ENST00000636147 EIF2AK2P19525 551 aaKnown RBP11.65□□□□□ -0.54
CLN3-244ENST00000636147 TRIP10Q15642 601 aa11.65□□□□□ -0.54
CLN3-244ENST00000636147 C11orf63Q6NUN7 778 aa11.65□□□□□ -0.54
CLN3-244ENST00000636147 LRRC74BQ6ZQY2 392 aa11.65□□□□□ -0.54
CLN3-244ENST00000636147 ZNF720Q7Z2F6 126 aa11.65□□□□□ -0.54
CLN3-244ENST00000636147 AGR3Q8TD06 166 aa11.65□□□□□ -0.54
CLN3-244ENST00000636147 HSPH1Q92598 858 aa11.65□□□□□ -0.54
CLN3-244ENST00000636147 ART4Q93070 314 aa11.65□□□□□ -0.54
CLN3-244ENST00000636147 DENND2DQ9H6A0 471 aaPredicted RBP11.65□□□□□ -0.54
CLN3-244ENST00000636147 MRPL11Q9Y3B7 192 aaKnown RBP11.65□□□□□ -0.54
CLN3-244ENST00000636147 GTPBP10A4D1E9 387 aaKnown RBP11.65□□□□□ -0.54
CLN3-244ENST00000636147 TCP10L2B9ZVM9 353 aa11.65□□□□□ -0.54
CLN3-244ENST00000636147 M0R2N6 131 aa11.65□□□□□ -0.54
CLN3-244ENST00000636147 ATP6V1B1P15313 513 aa11.65□□□□□ -0.54
CLN3-244ENST00000636147 RFX1P22670 979 aa11.65□□□□□ -0.54
CLN3-244ENST00000636147 SMARCA1P28370 1054 aa11.65□□□□□ -0.54
CLN3-244ENST00000636147 STAT2P52630 851 aa11.65□□□□□ -0.54
CLN3-244ENST00000636147 PPP4CP60510 307 aa11.65□□□□□ -0.54
CLN3-244ENST00000636147 SNRNP35Q16560 246 aaKnown RBP11.65□□□□□ -0.54
CLN3-244ENST00000636147 SMTNL2Q2TAL5 461 aa11.65□□□□□ -0.54
CLN3-244ENST00000636147 LRRC6Q86X45 466 aa11.65□□□□□ -0.54
CLN3-244ENST00000636147 ZNF75CPQ92670 426 aaPredicted RBP11.65□□□□□ -0.54
CLN3-244ENST00000636147 FAM81BQ96LP2 452 aa11.65□□□□□ -0.54
CLN3-244ENST00000636147 C10orf88Q9H8K7 445 aa11.65□□□□□ -0.54
CLN3-244ENST00000636147 PCDHA3Q9Y5H8 950 aa11.65□□□□□ -0.54
CLN3-244ENST00000636147 LMTK3Q96Q04 1460 aa11.64□□□□□ -0.55
CLN3-244ENST00000636147 MCF2LO15068 1137 aa11.64□□□□□ -0.55
CLN3-244ENST00000636147 RNF8O76064 485 aa11.64□□□□□ -0.55
CLN3-244ENST00000636147 ASPHQ12797 758 aa11.64□□□□□ -0.55
CLN3-244ENST00000636147 MMEL1Q495T6 779 aa11.64□□□□□ -0.55
CLN3-244ENST00000636147 SPDYCQ5MJ68 293 aa11.64□□□□□ -0.55
CLN3-244ENST00000636147 KCTD6Q8NC69 237 aa11.64□□□□□ -0.55
CLN3-244ENST00000636147 TBC1D16Q8TBP0 767 aa11.64□□□□□ -0.55
CLN3-244ENST00000636147 RBM41Q96IZ5 413 aaKnown RBP11.64□□□□□ -0.55
CLN3-244ENST00000636147 RTFDC1Q9BY42 306 aaPredicted RBP11.64□□□□□ -0.55
CLN3-244ENST00000636147 FBXO6Q9NRD1 293 aaPredicted RBP11.64□□□□□ -0.55
CLN3-244ENST00000636147 NMRK1Q9NWW6 199 aa11.64□□□□□ -0.55
CLN3-244ENST00000636147 NXF1Q9UBU9 619 aaKnown RBP11.64□□□□□ -0.55
CLN3-244ENST00000636147 CCPG1Q9ULG6 757 aa11.64□□□□□ -0.55
CLN3-244ENST00000636147 TUBGCP6Q96RT7 1819 aa11.64□□□□□ -0.55
CLN3-244ENST00000636147 TGFB1I1O43294 461 aa11.64□□□□□ -0.55
CLN3-244ENST00000636147 AHCYL1O43865 530 aa11.64□□□□□ -0.55
CLN3-244ENST00000636147 DNAJC6O75061 913 aa11.64□□□□□ -0.55
CLN3-244ENST00000636147 ETS1P14921 441 aa11.64□□□□□ -0.55
CLN3-244ENST00000636147 ROR2Q01974 943 aaKnown RBP11.64□□□□□ -0.55
CLN3-244ENST00000636147 PPP3CAQ08209 521 aa11.64□□□□□ -0.55
CLN3-244ENST00000636147 DBN1Q16643 649 aa11.64□□□□□ -0.55
CLN3-244ENST00000636147 SYDE1Q6ZW31 735 aaPredicted RBP11.64□□□□□ -0.55
CLN3-244ENST00000636147 SLFN11Q7Z7L1 901 aa11.64□□□□□ -0.55
CLN3-244ENST00000636147 NLRX1Q86UT6 975 aa11.64□□□□□ -0.55
CLN3-244ENST00000636147 NME8Q8N427 588 aa11.64□□□□□ -0.55
CLN3-244ENST00000636147 TTC16Q8NEE8 873 aa11.64□□□□□ -0.55
CLN3-244ENST00000636147 TCP10LQ8TDR4 215 aa11.64□□□□□ -0.55
CLN3-244ENST00000636147 CHURC1Q8WUH1 139 aa11.64□□□□□ -0.55
CLN3-244ENST00000636147 ATP2A3Q93084 1043 aa11.64□□□□□ -0.55
CLN3-244ENST00000636147 L3MBTL3Q96JM7 780 aaPredicted RBP11.64□□□□□ -0.55
CLN3-244ENST00000636147 TSNARE1Q96NA8 513 aa11.64□□□□□ -0.55
CLN3-244ENST00000636147 C8orf37Q96NL8 207 aa11.64□□□□□ -0.55
CLN3-244ENST00000636147 TMEM121Q9BTD3 319 aa11.64□□□□□ -0.55
CLN3-244ENST00000636147 ANLNQ9NQW6 1124 aa11.64□□□□□ -0.55
CLN3-244ENST00000636147 ARHGEF3Q9NR81 526 aa11.64□□□□□ -0.55
CLN3-244ENST00000636147 KIF13AQ9H1H9 1805 aa11.64□□□□□ -0.55
CLN3-244ENST00000636147 GPR75-ASB3A0A0A6YYF3 556 aa11.64□□□□□ -0.55
CLN3-244ENST00000636147 WDR64B1ANS9 1081 aa11.64□□□□□ -0.55
CLN3-244ENST00000636147 BANF1O75531 89 aa11.64□□□□□ -0.55
CLN3-244ENST00000636147 KRT37O76014 449 aa11.64□□□□□ -0.55
CLN3-244ENST00000636147 BGNP21810 368 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms