RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 SGSM3Q96HU1 749 aa13.58□□□□□ -0.24
LINC00540-203ENST00000631321 APOBEC3GQ9HC16 384 aaKnown RBP13.58□□□□□ -0.24
LINC00540-203ENST00000631321 MRPL47Q9HD33 250 aaKnown RBP13.58□□□□□ -0.24
LINC00540-203ENST00000631321 NINJ2Q9NZG7 142 aa13.58□□□□□ -0.24
LINC00540-203ENST00000631321 SLC12A4Q9UP95 1085 aa13.58□□□□□ -0.24
LINC00540-203ENST00000631321 ARID2Q68CP9 1835 aa13.58□□□□□ -0.24
LINC00540-203ENST00000631321 PTPRJQ12913 1337 aa13.58□□□□□ -0.24
LINC00540-203ENST00000631321 ATP2A1O14983 1001 aa13.58□□□□□ -0.24
LINC00540-203ENST00000631321 SUPT20HL2P0C7V6 817 aa13.58□□□□□ -0.24
LINC00540-203ENST00000631321 TNNI1P19237 187 aa13.58□□□□□ -0.24
LINC00540-203ENST00000631321 TAS2R40P59535 323 aa13.58□□□□□ -0.24
LINC00540-203ENST00000631321 C1QBPQ07021 282 aaKnown RBP13.58□□□□□ -0.24
LINC00540-203ENST00000631321 EMC2Q15006 297 aa13.58□□□□□ -0.24
LINC00540-203ENST00000631321 SUPT20HL1Q3ZLR7 823 aa13.58□□□□□ -0.24
LINC00540-203ENST00000631321 CCDC38Q502W7 563 aa13.58□□□□□ -0.24
LINC00540-203ENST00000631321 LMBRD2Q68DH5 695 aaPredicted RBP13.58□□□□□ -0.24
LINC00540-203ENST00000631321 SNRNP48Q6IEG0 339 aaKnown RBP13.58□□□□□ -0.24
LINC00540-203ENST00000631321 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.58□□□□□ -0.24
LINC00540-203ENST00000631321 C12orf42Q96LP6 360 aa13.58□□□□□ -0.24
LINC00540-203ENST00000631321 HAPLN2Q9GZV7 340 aa13.58□□□□□ -0.24
LINC00540-203ENST00000631321 ADAM22Q9P0K1 906 aa13.58□□□□□ -0.24
LINC00540-203ENST00000631321 ZNF214Q9UL59 606 aaPredicted RBP13.58□□□□□ -0.24
LINC00540-203ENST00000631321 SCINQ9Y6U3 715 aa13.58□□□□□ -0.24
LINC00540-203ENST00000631321 CHUKO15111 745 aa13.57□□□□□ -0.24
LINC00540-203ENST00000631321 SNX3O60493 162 aa13.57□□□□□ -0.24
LINC00540-203ENST00000631321 VIMP08670 466 aaKnown RBP13.57□□□□□ -0.24
LINC00540-203ENST00000631321 CLTAP09496 248 aa13.57□□□□□ -0.24
LINC00540-203ENST00000631321 ADCY8P40145 1251 aa13.57□□□□□ -0.24
LINC00540-203ENST00000631321 STRN3Q13033 797 aa13.57□□□□□ -0.24
LINC00540-203ENST00000631321 SLFN12LQ6IEE8 588 aa13.57□□□□□ -0.24
LINC00540-203ENST00000631321 SPOPLQ6IQ16 392 aa13.57□□□□□ -0.24
LINC00540-203ENST00000631321 CYB5D1Q6P9G0 228 aa13.57□□□□□ -0.24
LINC00540-203ENST00000631321 CCDC89Q8N998 374 aa13.57□□□□□ -0.24
LINC00540-203ENST00000631321 FAM212AQ96EL1 285 aa13.57□□□□□ -0.24
LINC00540-203ENST00000631321 SCLT1Q96NL6 688 aa13.57□□□□□ -0.24
LINC00540-203ENST00000631321 CGRRF1Q99675 332 aa13.57□□□□□ -0.24
LINC00540-203ENST00000631321 ELAC2Q9BQ52 826 aaKnown RBP13.57□□□□□ -0.24
LINC00540-203ENST00000631321 OSBPL8Q9BZF1 889 aa13.57□□□□□ -0.24
LINC00540-203ENST00000631321 FOXP3Q9BZS1 431 aa13.57□□□□□ -0.24
LINC00540-203ENST00000631321 PORCNQ9H237 461 aa13.57□□□□□ -0.24
LINC00540-203ENST00000631321 HAUS2Q9NVX0 235 aa13.57□□□□□ -0.24
LINC00540-203ENST00000631321 TMEM120BA0PK00 339 aa13.56□□□□□ -0.24
LINC00540-203ENST00000631321 O00370 1275 aa13.56□□□□□ -0.24
LINC00540-203ENST00000631321 THAP12O43422 761 aa13.56□□□□□ -0.24
LINC00540-203ENST00000631321 EGFRP00533 1210 aa13.56□□□□□ -0.24
LINC00540-203ENST00000631321 CFHP08603 1231 aa13.56□□□□□ -0.24
LINC00540-203ENST00000631321 POTEJP0CG39 1038 aa13.56□□□□□ -0.24
LINC00540-203ENST00000631321 TBXAS1P24557 533 aaPredicted RBP13.56□□□□□ -0.24
LINC00540-203ENST00000631321 KLRC2P26717 231 aa13.56□□□□□ -0.24
LINC00540-203ENST00000631321 NAMPTP43490 491 aa13.56□□□□□ -0.24
LINC00540-203ENST00000631321 KYNUQ16719 465 aa13.56□□□□□ -0.24
LINC00540-203ENST00000631321 PHLDB2Q86SQ0 1253 aa13.56□□□□□ -0.24
LINC00540-203ENST00000631321 CCDC50Q8IVM0 306 aa13.56□□□□□ -0.24
LINC00540-203ENST00000631321 MAGEC3Q8TD91 643 aa13.56□□□□□ -0.24
LINC00540-203ENST00000631321 CAMKK2Q96RR4 588 aa13.56□□□□□ -0.24
LINC00540-203ENST00000631321 C11orf70Q9BRQ4 267 aa13.56□□□□□ -0.24
LINC00540-203ENST00000631321 CCDC113Q9H0I3 377 aa13.56□□□□□ -0.24
LINC00540-203ENST00000631321 DHX33Q9H6R0 707 aaKnown RBP13.56□□□□□ -0.24
LINC00540-203ENST00000631321 CYP39A1Q9NYL5 469 aa13.56□□□□□ -0.24
LINC00540-203ENST00000631321 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.56□□□□□ -0.24
LINC00540-203ENST00000631321 ZNF112Q9UJU3 913 aa13.56□□□□□ -0.24
LINC00540-203ENST00000631321 ZNF541Q9H0D2 1346 aa13.56□□□□□ -0.24
LINC00540-203ENST00000631321 PARP14Q460N5 1801 aa13.56□□□□□ -0.24
LINC00540-203ENST00000631321 GOLGB1Q14789 3259 aaKnown RBP13.56□□□□□ -0.24
LINC00540-203ENST00000631321 ATG7O95352 703 aa13.56□□□□□ -0.24
LINC00540-203ENST00000631321 LDHAP00338 332 aaKnown RBP13.56□□□□□ -0.24
LINC00540-203ENST00000631321 GNA15P30679 374 aa13.56□□□□□ -0.24
LINC00540-203ENST00000631321 ARL2P36404 184 aa13.56□□□□□ -0.24
LINC00540-203ENST00000631321 IFNAR2P48551 515 aa13.56□□□□□ -0.24
LINC00540-203ENST00000631321 ACOT2P49753 483 aa13.56□□□□□ -0.24
LINC00540-203ENST00000631321 ZNF132P52740 706 aa13.56□□□□□ -0.24
LINC00540-203ENST00000631321 MKRN4PQ13434 485 aaPredicted RBP13.56□□□□□ -0.24
LINC00540-203ENST00000631321 TRIP13Q15645 432 aaPredicted RBP13.56□□□□□ -0.24
LINC00540-203ENST00000631321 GNPTABQ3T906 1256 aa13.56□□□□□ -0.24
LINC00540-203ENST00000631321 MTERF2Q49AM1 385 aa13.56□□□□□ -0.24
LINC00540-203ENST00000631321 C2CD6Q53TS8 623 aa13.56□□□□□ -0.24
LINC00540-203ENST00000631321 TRPM8Q7Z2W7 1104 aa13.56□□□□□ -0.24
LINC00540-203ENST00000631321 PARP9Q8IXQ6 854 aa13.56□□□□□ -0.24
LINC00540-203ENST00000631321 SCYL3Q8IZE3 742 aa13.56□□□□□ -0.24
LINC00540-203ENST00000631321 ASAP3Q8TDY4 903 aa13.56□□□□□ -0.24
LINC00540-203ENST00000631321 HEMGNQ9BXL5 484 aa13.56□□□□□ -0.24
LINC00540-203ENST00000631321 RBAKQ9NYW8 714 aaPredicted RBP13.56□□□□□ -0.24
LINC00540-203ENST00000631321 PCDHB4Q9Y5E5 795 aa13.56□□□□□ -0.24
LINC00540-203ENST00000631321 MAFBQ9Y5Q3 323 aaPredicted RBP13.56□□□□□ -0.24
LINC00540-203ENST00000631321 ACTL7BQ9Y614 415 aa13.56□□□□□ -0.24
LINC00540-203ENST00000631321 CNTNAP2Q9UHC6 1331 aa13.56□□□□□ -0.24
LINC00540-203ENST00000631321 A0A0B4J269 797 aa13.55□□□□□ -0.24
LINC00540-203ENST00000631321 ABHD2P08910 425 aa13.55□□□□□ -0.24
LINC00540-203ENST00000631321 ATP4AP20648 1035 aa13.55□□□□□ -0.24
LINC00540-203ENST00000631321 GLRA2P23416 452 aa13.55□□□□□ -0.24
LINC00540-203ENST00000631321 RPS12P25398 132 aaKnown RBP13.55□□□□□ -0.24
LINC00540-203ENST00000631321 POLGP54098 1239 aaPredicted RBP13.55□□□□□ -0.24
LINC00540-203ENST00000631321 HIBCHQ6NVY1 386 aaPredicted RBP13.55□□□□□ -0.24
LINC00540-203ENST00000631321 DRICH1Q6PGQ1 229 aaPredicted RBP13.55□□□□□ -0.24
LINC00540-203ENST00000631321 CEP128Q6ZU80 1094 aa13.55□□□□□ -0.24
LINC00540-203ENST00000631321 ZNF365Q70YC5 407 aa13.55□□□□□ -0.24
LINC00540-203ENST00000631321 UBR7Q8N806 425 aa13.55□□□□□ -0.24
LINC00540-203ENST00000631321 RBBP8NLQ8NC74 664 aaPredicted RBP13.55□□□□□ -0.24
LINC00540-203ENST00000631321 ZNF280CQ8ND82 737 aa13.55□□□□□ -0.24
LINC00540-203ENST00000631321 CKAP2Q8WWK9 683 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms