RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 BRCC3P46736 316 aa22.42■■□□□ 1.18
CLN3-240ENST00000631023 KCNQ1P51787 676 aa22.42■■□□□ 1.18
CLN3-240ENST00000631023 CLEC17AQ6ZS10 378 aa22.42■■□□□ 1.18
CLN3-240ENST00000631023 GADD45GIP1Q8TAE8 222 aaPredicted RBP22.42■■□□□ 1.18
CLN3-240ENST00000631023 MSLNLQ96KJ4 702 aa22.42■■□□□ 1.18
CLN3-240ENST00000631023 SUSD3Q96L08 255 aa22.42■■□□□ 1.18
CLN3-240ENST00000631023 FBXL18Q96ME1 805 aa22.42■■□□□ 1.18
CLN3-240ENST00000631023 DPP3Q9NY33 737 aa22.42■■□□□ 1.18
CLN3-240ENST00000631023 I3L4J1 428 aa22.42■■□□□ 1.18
CLN3-240ENST00000631023 SYN3O14994 580 aa22.42■■□□□ 1.18
CLN3-240ENST00000631023 GUCY2FP51841 1108 aa22.42■■□□□ 1.18
CLN3-240ENST00000631023 RBM10P98175 930 aaKnown RBP22.42■■□□□ 1.18
CLN3-240ENST00000631023 TFAMQ00059 246 aaKnown RBP22.42■■□□□ 1.18
CLN3-240ENST00000631023 PSMD5Q16401 504 aa22.42■■□□□ 1.18
CLN3-240ENST00000631023 SNRNP35Q16560 246 aaKnown RBP22.42■■□□□ 1.18
CLN3-240ENST00000631023 PTCRAQ6ISU1 281 aaPredicted RBP22.42■■□□□ 1.18
CLN3-240ENST00000631023 ANKRD54Q6NXT1 300 aa22.42■■□□□ 1.18
CLN3-240ENST00000631023 PRSS55Q6UWB4 352 aaPredicted RBP22.42■■□□□ 1.18
CLN3-240ENST00000631023 CBWD2Q8IUF1 395 aa22.42■■□□□ 1.18
CLN3-240ENST00000631023 GUF1Q8N442 669 aaKnown RBP22.42■■□□□ 1.18
CLN3-240ENST00000631023 RDH13Q8NBN7 331 aa22.42■■□□□ 1.18
CLN3-240ENST00000631023 LNX1Q8TBB1 728 aaPredicted RBP22.42■■□□□ 1.18
CLN3-240ENST00000631023 SLC22A17Q8WUG5 538 aa22.42■■□□□ 1.18
CLN3-240ENST00000631023 KCTD10Q9H3F6 313 aa22.42■■□□□ 1.18
CLN3-240ENST00000631023 DPP7Q9UHL4 492 aa22.42■■□□□ 1.18
CLN3-240ENST00000631023 PCDHA5Q9Y5H7 936 aa22.42■■□□□ 1.18
CLN3-240ENST00000631023 EXOC3O60645 756 aa22.41■■□□□ 1.18
CLN3-240ENST00000631023 C1RP00736 705 aa22.41■■□□□ 1.18
CLN3-240ENST00000631023 BMP1P13497 986 aa22.41■■□□□ 1.18
CLN3-240ENST00000631023 CLCN4P51793 760 aa22.41■■□□□ 1.18
CLN3-240ENST00000631023 CLUL1Q15846 466 aa22.41■■□□□ 1.18
CLN3-240ENST00000631023 C9orf57Q5W0N0 161 aa22.41■■□□□ 1.18
CLN3-240ENST00000631023 ELMSAN1Q6PJG2 1045 aa22.41■■□□□ 1.18
CLN3-240ENST00000631023 ANKS3Q6ZW76 656 aa22.41■■□□□ 1.18
CLN3-240ENST00000631023 EFCAB13Q8IY85 973 aa22.41■■□□□ 1.18
CLN3-240ENST00000631023 APPL2Q8NEU8 664 aa22.41■■□□□ 1.18
CLN3-240ENST00000631023 PDE11AQ9HCR9 933 aa22.41■■□□□ 1.18
CLN3-240ENST00000631023 DZANK1Q9NVP4 752 aa22.41■■□□□ 1.18
CLN3-240ENST00000631023 PIRO00625 290 aa22.4■■□□□ 1.18
CLN3-240ENST00000631023 CALUO43852 315 aaPredicted RBP22.4■■□□□ 1.18
CLN3-240ENST00000631023 TKTP29401 623 aaKnown RBP22.4■■□□□ 1.18
CLN3-240ENST00000631023 SPATA20Q8TB22 786 aa22.4■■□□□ 1.18
CLN3-240ENST00000631023 TMEM174Q8WUU8 243 aa22.4■■□□□ 1.18
CLN3-240ENST00000631023 MAPK8IP1Q9UQF2 711 aa22.4■■□□□ 1.18
CLN3-240ENST00000631023 ANO9A1A5B4 782 aa22.39■■□□□ 1.18
CLN3-240ENST00000631023 GRXCR2A6NFK2 248 aa22.39■■□□□ 1.18
CLN3-240ENST00000631023 GLUD1P00367 558 aa22.39■■□□□ 1.18
CLN3-240ENST00000631023 EPCAMP16422 314 aa22.39■■□□□ 1.18
CLN3-240ENST00000631023 LILRA4P59901 499 aa22.39■■□□□ 1.18
CLN3-240ENST00000631023 SMAD4Q13485 552 aaKnown RBP22.39■■□□□ 1.18
CLN3-240ENST00000631023 MYBPC2Q14324 1141 aa22.39■■□□□ 1.18
CLN3-240ENST00000631023 ZNF658Q5TYW1 1059 aaPredicted RBP22.39■■□□□ 1.18
CLN3-240ENST00000631023 SLC9A9Q8IVB4 645 aa22.39■■□□□ 1.18
CLN3-240ENST00000631023 SMRP1Q8NCR6 262 aa22.39■■□□□ 1.18
CLN3-240ENST00000631023 GBP4Q96PP9 640 aa22.39■■□□□ 1.18
CLN3-240ENST00000631023 FNBP1Q96RU3 617 aa22.39■■□□□ 1.18
CLN3-240ENST00000631023 ARHGEF37A1IGU5 675 aa22.38■■□□□ 1.17
CLN3-240ENST00000631023 SPDYE4A6NLX3 237 aa22.38■■□□□ 1.17
CLN3-240ENST00000631023 H7C4K7 107 aa22.38■■□□□ 1.17
CLN3-240ENST00000631023 TMEM191BP0C7N4 346 aa22.38■■□□□ 1.17
CLN3-240ENST00000631023 RPL17P18621 184 aaKnown RBP22.38■■□□□ 1.17
CLN3-240ENST00000631023 AARSP49588 968 aaKnown RBP eCLIP22.38■■□□□ 1.17
CLN3-240ENST00000631023 WNT7BP56706 349 aa22.38■■□□□ 1.17
CLN3-240ENST00000631023 DSTYKQ6XUX3 929 aa22.38■■□□□ 1.17
CLN3-240ENST00000631023 PALB2Q86YC2 1186 aa22.38■■□□□ 1.17
CLN3-240ENST00000631023 GLYCTKQ8IVS8 523 aa22.38■■□□□ 1.17
CLN3-240ENST00000631023 TMEM130Q8N3G9 435 aa22.38■■□□□ 1.17
CLN3-240ENST00000631023 ANKRD36BP1Q96IX9 119 aa22.38■■□□□ 1.17
CLN3-240ENST00000631023 MTRRQ9UBK8 725 aa22.38■■□□□ 1.17
CLN3-240ENST00000631023 PCDHB8Q9UN66 801 aa22.38■■□□□ 1.17
CLN3-240ENST00000631023 TRAF3IP3Q9Y228 551 aa22.38■■□□□ 1.17
CLN3-240ENST00000631023 R3HCC1Q9Y3T6 440 aaKnown RBP22.38■■□□□ 1.17
CLN3-240ENST00000631023 BACE2Q9Y5Z0 518 aa22.38■■□□□ 1.17
CLN3-240ENST00000631023 M0QZQ0 153 aa22.38■■□□□ 1.17
CLN3-240ENST00000631023 NR3C1P04150 777 aa22.38■■□□□ 1.17
CLN3-240ENST00000631023 CYP24A1Q07973 514 aa22.38■■□□□ 1.17
CLN3-240ENST00000631023 DUOXA2Q1HG44 320 aa22.38■■□□□ 1.17
CLN3-240ENST00000631023 VARS2Q5ST30 1063 aaKnown RBP22.38■■□□□ 1.17
CLN3-240ENST00000631023 ERCC4Q92889 916 aaPredicted RBP22.38■■□□□ 1.17
CLN3-240ENST00000631023 CLSTN3Q9BQT9 956 aa22.38■■□□□ 1.17
CLN3-240ENST00000631023 DMAC2Q9NW81 257 aa22.38■■□□□ 1.17
CLN3-240ENST00000631023 MBTPS2O43462 519 aa22.37■■□□□ 1.17
CLN3-240ENST00000631023 TNNC2P02585 160 aa22.37■■□□□ 1.17
CLN3-240ENST00000631023 RPL13P26373 211 aaKnown RBP22.37■■□□□ 1.17
CLN3-240ENST00000631023 PNPLA4P41247 253 aa22.37■■□□□ 1.17
CLN3-240ENST00000631023 TAF6P49848 677 aa22.37■■□□□ 1.17
CLN3-240ENST00000631023 PSMD6Q15008 389 aa22.37■■□□□ 1.17
CLN3-240ENST00000631023 CES5AQ6NT32 575 aa22.37■■□□□ 1.17
CLN3-240ENST00000631023 SYCE2Q6PIF2 218 aa22.37■■□□□ 1.17
CLN3-240ENST00000631023 WDR49Q8IV35 697 aa22.37■■□□□ 1.17
CLN3-240ENST00000631023 HDAC7Q8WUI4 952 aa22.37■■□□□ 1.17
CLN3-240ENST00000631023 MFSD14AQ96MC6 490 aa22.37■■□□□ 1.17
CLN3-240ENST00000631023 ZNF560Q96MR9 790 aa22.37■■□□□ 1.17
CLN3-240ENST00000631023 PLEKHA4Q9H4M7 779 aa22.37■■□□□ 1.17
CLN3-240ENST00000631023 INTS13Q9NVM9 706 aa22.37■■□□□ 1.17
CLN3-240ENST00000631023 ITGA11Q9UKX5 1188 aa22.37■■□□□ 1.17
CLN3-240ENST00000631023 FRMD4BQ9Y2L6 1034 aa22.37■■□□□ 1.17
CLN3-240ENST00000631023 PPEF2O14830 753 aa22.36■■□□□ 1.17
CLN3-240ENST00000631023 DLATP10515 647 aaKnown RBP22.36■■□□□ 1.17
CLN3-240ENST00000631023 TNNI1P19237 187 aa22.36■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms