RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 SPATA18Q8TC71 538 aa14.75□□□□□ -0.05
CPSF1-212ENST00000616140 PARD3BQ8TEW8 1205 aa14.75□□□□□ -0.05
CPSF1-212ENST00000616140 NRBF2Q96F24 287 aa14.75□□□□□ -0.05
CPSF1-212ENST00000616140 POLR3CQ9BUI4 534 aaPredicted RBP14.75□□□□□ -0.05
CPSF1-212ENST00000616140 L3MBTL1Q9Y468 752 aa14.75□□□□□ -0.05
CPSF1-212ENST00000616140 P4HA2O15460 535 aa14.75□□□□□ -0.05
CPSF1-212ENST00000616140 ZBTB24O43167 697 aaPredicted RBP14.75□□□□□ -0.05
CPSF1-212ENST00000616140 EARS2Q5JPH6 523 aaKnown RBP14.75□□□□□ -0.05
CPSF1-212ENST00000616140 SPDYE1Q8NFV5 336 aaPredicted RBP14.75□□□□□ -0.05
CPSF1-212ENST00000616140 SPON2Q9BUD6 331 aa14.75□□□□□ -0.05
CPSF1-212ENST00000616140 ZNF70Q9UC06 446 aaPredicted RBP14.75□□□□□ -0.05
CPSF1-212ENST00000616140 ENO1P06733 434 aaKnown RBP14.74□□□□□ -0.05
CPSF1-212ENST00000616140 HERVK_113P62684 666 aa14.74□□□□□ -0.05
CPSF1-212ENST00000616140 MDH1BQ5I0G3 518 aa14.74□□□□□ -0.05
CPSF1-212ENST00000616140 CAPRIN2Q6IMN6 1127 aaKnown RBP14.74□□□□□ -0.05
CPSF1-212ENST00000616140 ANO5Q75V66 913 aa14.74□□□□□ -0.05
CPSF1-212ENST00000616140 GIPC2Q8TF65 315 aa14.74□□□□□ -0.05
CPSF1-212ENST00000616140 TNIP3Q96KP6 325 aa14.74□□□□□ -0.05
CPSF1-212ENST00000616140 MMP19Q99542 508 aa14.74□□□□□ -0.05
CPSF1-212ENST00000616140 ROPN1BQ9BZX4 212 aaPredicted RBP14.74□□□□□ -0.05
CPSF1-212ENST00000616140 PABPC3Q9H361 631 aaKnown RBP14.74□□□□□ -0.05
CPSF1-212ENST00000616140 ROPN1Q9HAT0 212 aaPredicted RBP14.74□□□□□ -0.05
CPSF1-212ENST00000616140 SARS2Q9NP81 518 aaKnown RBP14.74□□□□□ -0.05
CPSF1-212ENST00000616140 COILP38432 576 aaPredicted RBP14.74□□□□□ -0.05
CPSF1-212ENST00000616140 ALDH18A1P54886 795 aaKnown RBP14.74□□□□□ -0.05
CPSF1-212ENST00000616140 RPS6P62753 249 aaKnown RBP14.74□□□□□ -0.05
CPSF1-212ENST00000616140 IFT43Q96FT9 208 aa14.74□□□□□ -0.05
CPSF1-212ENST00000616140 ZBTB18Q99592 522 aa14.74□□□□□ -0.05
CPSF1-212ENST00000616140 RANBP17Q9H2T7 1088 aaKnown RBP14.74□□□□□ -0.05
CPSF1-212ENST00000616140 SLC4A7Q9Y6M7 1214 aa14.74□□□□□ -0.05
CPSF1-212ENST00000616140 CCDC78A2IDD5 438 aa14.74□□□□□ -0.05
CPSF1-212ENST00000616140 E2F6O75461 281 aa14.74□□□□□ -0.05
CPSF1-212ENST00000616140 PPARGP37231 505 aaPredicted RBP14.74□□□□□ -0.05
CPSF1-212ENST00000616140 MXD4Q14582 209 aaPredicted RBP14.74□□□□□ -0.05
CPSF1-212ENST00000616140 C2CD6Q53TS8 623 aa14.74□□□□□ -0.05
CPSF1-212ENST00000616140 GPAT2Q6NUI2 795 aa14.74□□□□□ -0.05
CPSF1-212ENST00000616140 FOXP3Q9BZS1 431 aa14.74□□□□□ -0.05
CPSF1-212ENST00000616140 TMEM39BQ9GZU3 492 aa14.74□□□□□ -0.05
CPSF1-212ENST00000616140 XPO7Q9UIA9 1087 aaKnown RBP14.74□□□□□ -0.05
CPSF1-212ENST00000616140 PRLRP16471 622 aa14.74□□□□□ -0.05
CPSF1-212ENST00000616140 PMS1P54277 932 aaKnown RBP14.74□□□□□ -0.05
CPSF1-212ENST00000616140 TMED1Q13445 227 aa14.74□□□□□ -0.05
CPSF1-212ENST00000616140 CUL3Q13618 768 aa14.74□□□□□ -0.05
CPSF1-212ENST00000616140 NCLNQ969V3 563 aa14.74□□□□□ -0.05
CPSF1-212ENST00000616140 ARHGEF26Q96DR7 871 aa14.74□□□□□ -0.05
CPSF1-212ENST00000616140 ZNF560Q96MR9 790 aa14.74□□□□□ -0.05
CPSF1-212ENST00000616140 WARS2Q9UGM6 360 aaKnown RBP14.74□□□□□ -0.05
CPSF1-212ENST00000616140 SPATA31A1Q5TZJ5 1347 aa14.73□□□□□ -0.05
CPSF1-212ENST00000616140 CCT8L1PA6NM43 557 aa14.73□□□□□ -0.05
CPSF1-212ENST00000616140 PPP1R12AO14974 1030 aaPredicted RBP14.73□□□□□ -0.05
CPSF1-212ENST00000616140 SNX2O60749 519 aa14.73□□□□□ -0.05
CPSF1-212ENST00000616140 CORO7P57737 925 aa14.73□□□□□ -0.05
CPSF1-212ENST00000616140 RBP5P82980 135 aa14.73□□□□□ -0.05
CPSF1-212ENST00000616140 ZNF200P98182 395 aaPredicted RBP14.73□□□□□ -0.05
CPSF1-212ENST00000616140 RASSF3Q86WH2 238 aa14.73□□□□□ -0.05
CPSF1-212ENST00000616140 KCTD17Q8N5Z5 321 aa14.73□□□□□ -0.05
CPSF1-212ENST00000616140 FBXO25Q8TCJ0 367 aa14.73□□□□□ -0.05
CPSF1-212ENST00000616140 ING2Q9H160 280 aa14.73□□□□□ -0.05
CPSF1-212ENST00000616140 DNAJC3Q13217 504 aa14.73□□□□□ -0.05
CPSF1-212ENST00000616140 HIC1Q14526 733 aa14.73□□□□□ -0.05
CPSF1-212ENST00000616140 KDELC2Q7Z4H8 507 aa14.73□□□□□ -0.05
CPSF1-212ENST00000616140 ILDR1Q86SU0 546 aaPredicted RBP14.73□□□□□ -0.05
CPSF1-212ENST00000616140 MOV10L1Q9BXT6 1211 aaKnown RBP14.73□□□□□ -0.05
CPSF1-212ENST00000616140 GPRC5CQ9NQ84 441 aa14.73□□□□□ -0.05
CPSF1-212ENST00000616140 IGSF9BQ9UPX0 1349 aa14.73□□□□□ -0.05
CPSF1-212ENST00000616140 CAMSAP1Q5T5Y3 1602 aa14.73□□□□□ -0.05
CPSF1-212ENST00000616140 ABCA9Q8IUA7 1624 aa14.73□□□□□ -0.05
CPSF1-212ENST00000616140 H3BQF6 201 aa14.73□□□□□ -0.05
CPSF1-212ENST00000616140 EEF1DP29692 281 aaKnown RBP14.73□□□□□ -0.05
CPSF1-212ENST00000616140 GTF2H1P32780 548 aa14.73□□□□□ -0.05
CPSF1-212ENST00000616140 STX3Q13277 289 aa14.73□□□□□ -0.05
CPSF1-212ENST00000616140 EFTUD2Q15029 972 aaKnown RBP eCLIP14.73□□□□□ -0.053e-7■■■■■ 29.2
CPSF1-212ENST00000616140 LRRC23Q53EV4 343 aaPredicted RBP14.73□□□□□ -0.05
CPSF1-212ENST00000616140 INTS5Q6P9B9 1019 aaKnown RBP14.73□□□□□ -0.05
CPSF1-212ENST00000616140 ANGPTL8Q6UXH0 198 aa14.73□□□□□ -0.05
CPSF1-212ENST00000616140 FRA10AC1Q70Z53 315 aa14.73□□□□□ -0.05
CPSF1-212ENST00000616140 CBWD2Q8IUF1 395 aa14.73□□□□□ -0.05
CPSF1-212ENST00000616140 ZNF280CQ8ND82 737 aa14.73□□□□□ -0.05
CPSF1-212ENST00000616140 LRRN4CLQ8ND94 238 aa14.73□□□□□ -0.05
CPSF1-212ENST00000616140 ZSWIM1Q9BR11 485 aa14.73□□□□□ -0.05
CPSF1-212ENST00000616140 AKAP3O75969 853 aa14.72□□□□□ -0.05
CPSF1-212ENST00000616140 RARBP10826 455 aa14.72□□□□□ -0.05
CPSF1-212ENST00000616140 ZBTB41Q5SVQ8 909 aa14.72□□□□□ -0.05
CPSF1-212ENST00000616140 PRAMEF18Q5VWM3 479 aa14.72□□□□□ -0.05
CPSF1-212ENST00000616140 CDR2LQ86X02 465 aaPredicted RBP14.72□□□□□ -0.05
CPSF1-212ENST00000616140 MYCBPAPQ8TBZ2 947 aa14.72□□□□□ -0.05
CPSF1-212ENST00000616140 ACER1Q8TDN7 264 aa14.72□□□□□ -0.05
CPSF1-212ENST00000616140 ATG4AQ8WYN0 398 aa14.72□□□□□ -0.05
CPSF1-212ENST00000616140 PPP1R36Q96LQ0 422 aa14.72□□□□□ -0.05
CPSF1-212ENST00000616140 KDM6AO15550 1401 aaPredicted RBP14.72□□□□□ -0.05
CPSF1-212ENST00000616140 MICALL2Q8IY33 904 aa14.72□□□□□ -0.05
CPSF1-212ENST00000616140 LRRC71Q8N4P6 559 aa14.72□□□□□ -0.05
CPSF1-212ENST00000616140 SCFD1Q8WVM8 642 aa14.72□□□□□ -0.05
CPSF1-212ENST00000616140 ULK4Q96C45 1275 aa14.72□□□□□ -0.05
CPSF1-212ENST00000616140 CBWD1Q9BRT8 395 aa14.72□□□□□ -0.05
CPSF1-212ENST00000616140 TRIM15Q9C019 465 aa14.72□□□□□ -0.05
CPSF1-212ENST00000616140 FAM49BQ9NUQ9 324 aa14.72□□□□□ -0.05
CPSF1-212ENST00000616140 UBA6A0AVT1 1052 aaPredicted RBP14.72□□□□□ -0.05
CPSF1-212ENST00000616140 PDGFRBP09619 1106 aa14.72□□□□□ -0.05
CPSF1-212ENST00000616140 SETSIPP0DME0 302 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms