RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 COQ6Q9Y2Z9 468 aa10.82□□□□□ -0.68
VPS39-214ENST00000614932 UBR3Q6ZT12 1888 aa10.82□□□□□ -0.68
VPS39-214ENST00000614932 A0A1W2PQ67 120 aa10.81□□□□□ -0.68
VPS39-214ENST00000614932 HNRNPCL1O60812 293 aaKnown RBP10.81□□□□□ -0.68
VPS39-214ENST00000614932 CRABP2P29373 138 aa10.81□□□□□ -0.68
VPS39-214ENST00000614932 UBA7P41226 1012 aa10.81□□□□□ -0.68
VPS39-214ENST00000614932 CDR2Q01850 454 aa10.81□□□□□ -0.68
VPS39-214ENST00000614932 TGFBIQ15582 683 aa10.81□□□□□ -0.68
VPS39-214ENST00000614932 NDUFA5Q16718 116 aa10.81□□□□□ -0.68
VPS39-214ENST00000614932 CDC42EP5Q6NZY7 148 aa10.81□□□□□ -0.68
VPS39-214ENST00000614932 PDXDC2PQ6P474 469 aa10.81□□□□□ -0.68
VPS39-214ENST00000614932 NEK10Q6ZWH5 1172 aa10.81□□□□□ -0.68
VPS39-214ENST00000614932 IRF2BP1Q8IU81 584 aa10.81□□□□□ -0.68
VPS39-214ENST00000614932 ESX1Q8N693 406 aa10.81□□□□□ -0.68
VPS39-214ENST00000614932 TBCKQ8TEA7 893 aa10.81□□□□□ -0.68
VPS39-214ENST00000614932 FMO2Q99518 471 aa10.81□□□□□ -0.68
VPS39-214ENST00000614932 ZNF287Q9HBT7 754 aa10.81□□□□□ -0.68
VPS39-214ENST00000614932 ARHGAP20Q9P2F6 1191 aa10.81□□□□□ -0.68
VPS39-214ENST00000614932 DOLKQ9UPQ8 538 aa10.81□□□□□ -0.68
VPS39-214ENST00000614932 CHKBQ9Y259 395 aa10.81□□□□□ -0.68
VPS39-214ENST00000614932 LAMB1P07942 1786 aa10.81□□□□□ -0.68
VPS39-214ENST00000614932 A0A1W2PQJ5 194 aa10.81□□□□□ -0.68
VPS39-214ENST00000614932 TTLL13PA6NNM8 815 aa10.81□□□□□ -0.68
VPS39-214ENST00000614932 CES2O00748 559 aa10.81□□□□□ -0.68
VPS39-214ENST00000614932 DCTN3O75935 186 aa10.81□□□□□ -0.68
VPS39-214ENST00000614932 POLR2EP19388 210 aaKnown RBP10.81□□□□□ -0.68
VPS39-214ENST00000614932 EEF1GP26641 437 aaKnown RBP10.81□□□□□ -0.68
VPS39-214ENST00000614932 PHBP35232 272 aa10.81□□□□□ -0.68
VPS39-214ENST00000614932 EIF4A3P38919 411 aaKnown RBP10.81□□□□□ -0.68
VPS39-214ENST00000614932 PLCB3Q01970 1234 aa10.81□□□□□ -0.68
VPS39-214ENST00000614932 MEI1Q5TIA1 1274 aa10.81□□□□□ -0.68
VPS39-214ENST00000614932 WDR78Q5VTH9 848 aa10.81□□□□□ -0.68
VPS39-214ENST00000614932 BTNL9Q6UXG8 535 aa10.81□□□□□ -0.68
VPS39-214ENST00000614932 C15orf52Q6ZUT6 534 aaKnown RBP10.81□□□□□ -0.68
VPS39-214ENST00000614932 VPS36Q86VN1 386 aa10.81□□□□□ -0.68
VPS39-214ENST00000614932 PIP4K2CQ8TBX8 421 aa10.81□□□□□ -0.68
VPS39-214ENST00000614932 SEC14L1Q92503 715 aa10.81□□□□□ -0.68
VPS39-214ENST00000614932 NEURL2Q9BR09 285 aa10.81□□□□□ -0.68
VPS39-214ENST00000614932 EPB41L4BQ9H329 900 aa10.81□□□□□ -0.68
VPS39-214ENST00000614932 STXBP5LQ9Y2K9 1186 aa10.81□□□□□ -0.68
VPS39-214ENST00000614932 UTP11Q9Y3A2 253 aaKnown RBP10.81□□□□□ -0.68
VPS39-214ENST00000614932 ROBO3Q96MS0 1386 aa10.81□□□□□ -0.68
VPS39-214ENST00000614932 ARHGAP10A1A4S6 786 aa10.8□□□□□ -0.68
VPS39-214ENST00000614932 PALMO75781 387 aa10.8□□□□□ -0.68
VPS39-214ENST00000614932 FTCDO95954 541 aa10.8□□□□□ -0.68
VPS39-214ENST00000614932 HNRNPH3P31942 346 aaKnown RBP10.8□□□□□ -0.68
VPS39-214ENST00000614932 RPL5P46777 297 aaKnown RBP10.8□□□□□ -0.68
VPS39-214ENST00000614932 EIF2B2P49770 351 aaKnown RBP10.8□□□□□ -0.68
VPS39-214ENST00000614932 BCAP31P51572 246 aa10.8□□□□□ -0.68
VPS39-214ENST00000614932 IGBP1P78318 339 aa10.8□□□□□ -0.68
VPS39-214ENST00000614932 EIF2B5Q13144 721 aaKnown RBP10.8□□□□□ -0.68
VPS39-214ENST00000614932 NR1D2Q14995 579 aa10.8□□□□□ -0.68
VPS39-214ENST00000614932 MYLK3Q32MK0 819 aa10.8□□□□□ -0.68
VPS39-214ENST00000614932 TNFAIP8L3Q5GJ75 292 aa10.8□□□□□ -0.68
VPS39-214ENST00000614932 PPP2R2DQ66LE6 453 aa10.8□□□□□ -0.68
VPS39-214ENST00000614932 ANO5Q75V66 913 aa10.8□□□□□ -0.68
VPS39-214ENST00000614932 UBE2Q1Q7Z7E8 422 aa10.8□□□□□ -0.68
VPS39-214ENST00000614932 TGS1Q96RS0 853 aaKnown RBP10.8□□□□□ -0.68
VPS39-214ENST00000614932 LBHD1Q9BQE6 289 aaPredicted RBP10.8□□□□□ -0.68
VPS39-214ENST00000614932 PDGFDQ9GZP0 370 aaPredicted RBP10.8□□□□□ -0.68
VPS39-214ENST00000614932 COA1Q9GZY4 146 aa10.8□□□□□ -0.68
VPS39-214ENST00000614932 MTMR4Q9NYA4 1195 aa10.8□□□□□ -0.68
VPS39-214ENST00000614932 GAKO14976 1311 aa10.8□□□□□ -0.68
VPS39-214ENST00000614932 M0R2N6 131 aa10.8□□□□□ -0.68
VPS39-214ENST00000614932 ZBED4O75132 1171 aa10.8□□□□□ -0.68
VPS39-214ENST00000614932 STAM2O75886 525 aa10.8□□□□□ -0.68
VPS39-214ENST00000614932 BMP15O95972 392 aa10.8□□□□□ -0.68
VPS39-214ENST00000614932 UBL4AP11441 157 aa10.8□□□□□ -0.68
VPS39-214ENST00000614932 PTPN2P17706 415 aa10.8□□□□□ -0.68
VPS39-214ENST00000614932 PPP2R5CQ13362 524 aa10.8□□□□□ -0.68
VPS39-214ENST00000614932 MED21Q13503 144 aa10.8□□□□□ -0.68
VPS39-214ENST00000614932 SEPT6Q14141 434 aa10.8□□□□□ -0.68
VPS39-214ENST00000614932 ANKDD1AQ495B1 522 aa10.8□□□□□ -0.68
VPS39-214ENST00000614932 SPDYAQ5MJ70 313 aa10.8□□□□□ -0.68
VPS39-214ENST00000614932 VASH1Q7L8A9 365 aaPredicted RBP10.8□□□□□ -0.68
VPS39-214ENST00000614932 C2CD5Q86YS7 1000 aa10.8□□□□□ -0.68
VPS39-214ENST00000614932 GRAMD2AQ8IUY3 354 aa10.8□□□□□ -0.68
VPS39-214ENST00000614932 GPIHBP1Q8IV16 184 aa10.8□□□□□ -0.68
VPS39-214ENST00000614932 MYO1HQ8N1T3 1032 aa10.8□□□□□ -0.68
VPS39-214ENST00000614932 NLGN1Q8N2Q7 840 aa10.8□□□□□ -0.68
VPS39-214ENST00000614932 SPERTQ8NA61 448 aa10.8□□□□□ -0.68
VPS39-214ENST00000614932 ANKS1AQ92625 1134 aa10.8□□□□□ -0.68
VPS39-214ENST00000614932 PCMTD1Q96MG8 357 aaPredicted RBP10.8□□□□□ -0.68
VPS39-214ENST00000614932 PRPF18Q99633 342 aaKnown RBP10.8□□□□□ -0.68
VPS39-214ENST00000614932 TMEM109Q9BVC6 243 aa10.8□□□□□ -0.68
VPS39-214ENST00000614932 SERPINB13Q9UIV8 391 aa10.8□□□□□ -0.68
VPS39-214ENST00000614932 PLAGL2Q9UPG8 496 aa10.8□□□□□ -0.68
VPS39-214ENST00000614932 DMTF1Q9Y222 760 aa10.8□□□□□ -0.68
VPS39-214ENST00000614932 SNX9Q9Y5X1 595 aa10.8□□□□□ -0.68
VPS39-214ENST00000614932 TRMUO75648 421 aaKnown RBP10.8□□□□□ -0.68
VPS39-214ENST00000614932 CBX6O95503 412 aa10.8□□□□□ -0.68
VPS39-214ENST00000614932 RPN1P04843 607 aaKnown RBP10.8□□□□□ -0.68
VPS39-214ENST00000614932 EIF2S1P05198 315 aaKnown RBP10.8□□□□□ -0.68
VPS39-214ENST00000614932 NPR1P16066 1061 aa10.8□□□□□ -0.68
VPS39-214ENST00000614932 PRCPP42785 496 aa10.8□□□□□ -0.68
VPS39-214ENST00000614932 TNNI2P48788 182 aa10.8□□□□□ -0.68
VPS39-214ENST00000614932 MXI1P50539 228 aa10.8□□□□□ -0.68
VPS39-214ENST00000614932 EHHADHQ08426 723 aa10.8□□□□□ -0.68
VPS39-214ENST00000614932 HNRNPDQ14103 355 aaKnown RBP10.8□□□□□ -0.68
VPS39-214ENST00000614932 NAALADL2Q58DX5 795 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms