RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 GOLGA5Q8TBA6 731 aa18.26■□□□□ 0.51
TRIM28-215ENST00000601150 SUSD3Q96L08 255 aa18.26■□□□□ 0.51
TRIM28-215ENST00000601150 FBXL18Q96ME1 805 aa18.26■□□□□ 0.51
TRIM28-215ENST00000601150 TIGD1Q96MW7 591 aa18.26■□□□□ 0.51
TRIM28-215ENST00000601150 UHRF1Q96T88 793 aaPredicted RBP18.26■□□□□ 0.51
TRIM28-215ENST00000601150 SCN1AP35498 2009 aa18.25■□□□□ 0.51
TRIM28-215ENST00000601150 TULP1O00294 542 aaPredicted RBP18.25■□□□□ 0.51
TRIM28-215ENST00000601150 SYN3O14994 580 aa18.25■□□□□ 0.51
TRIM28-215ENST00000601150 CLIC2O15247 247 aa18.25■□□□□ 0.51
TRIM28-215ENST00000601150 GLUD1P00367 558 aa18.25■□□□□ 0.51
TRIM28-215ENST00000601150 RPL17P18621 184 aaKnown RBP18.25■□□□□ 0.51
TRIM28-215ENST00000601150 CYP2J2P51589 502 aa18.25■□□□□ 0.51
TRIM28-215ENST00000601150 PNOCQ13519 176 aa18.25■□□□□ 0.51
TRIM28-215ENST00000601150 SMAD2Q15796 467 aaKnown RBP18.25■□□□□ 0.51
TRIM28-215ENST00000601150 C9orf57Q5W0N0 161 aa18.25■□□□□ 0.51
TRIM28-215ENST00000601150 ELMSAN1Q6PJG2 1045 aa18.25■□□□□ 0.51
TRIM28-215ENST00000601150 ANKS3Q6ZW76 656 aa18.25■□□□□ 0.51
TRIM28-215ENST00000601150 PALB2Q86YC2 1186 aa18.25■□□□□ 0.51
TRIM28-215ENST00000601150 GLYCTKQ8IVS8 523 aa18.25■□□□□ 0.51
TRIM28-215ENST00000601150 C12orf56Q8IXR9 622 aa18.25■□□□□ 0.51
TRIM28-215ENST00000601150 XXYLT1Q8NBI6 393 aa18.25■□□□□ 0.51
TRIM28-215ENST00000601150 CLSTN3Q9BQT9 956 aa18.25■□□□□ 0.51
TRIM28-215ENST00000601150 S1PR5Q9H228 398 aa18.25■□□□□ 0.51
TRIM28-215ENST00000601150 DPP3Q9NY33 737 aa18.25■□□□□ 0.51
TRIM28-215ENST00000601150 MTRRQ9UBK8 725 aa18.25■□□□□ 0.51
TRIM28-215ENST00000601150 DPP7Q9UHL4 492 aa18.25■□□□□ 0.51
TRIM28-215ENST00000601150 HOOK1Q9UJC3 728 aaKnown RBP18.25■□□□□ 0.51
TRIM28-215ENST00000601150 USP15Q9Y4E8 981 aaPredicted RBP18.25■□□□□ 0.51
TRIM28-215ENST00000601150 ANO9A1A5B4 782 aa18.24■□□□□ 0.51
TRIM28-215ENST00000601150 SPDYE4A6NLX3 237 aa18.24■□□□□ 0.51
TRIM28-215ENST00000601150 DLL1O00548 723 aa18.24■□□□□ 0.51
TRIM28-215ENST00000601150 GADD45BO75293 160 aaPredicted RBP18.24■□□□□ 0.51
TRIM28-215ENST00000601150 KIF20AO95235 890 aa18.24■□□□□ 0.51
TRIM28-215ENST00000601150 PAX3P23760 479 aa18.24■□□□□ 0.51
TRIM28-215ENST00000601150 AARSP49588 968 aaKnown RBP eCLIP18.24■□□□□ 0.51
TRIM28-215ENST00000601150 WNT7BP56706 349 aa18.24■□□□□ 0.51
TRIM28-215ENST00000601150 TFAMQ00059 246 aaKnown RBP18.24■□□□□ 0.51
TRIM28-215ENST00000601150 SURF1Q15526 300 aa18.24■□□□□ 0.51
TRIM28-215ENST00000601150 VARS2Q5ST30 1063 aaKnown RBP18.24■□□□□ 0.51
TRIM28-215ENST00000601150 CES5AQ6NT32 575 aa18.24■□□□□ 0.51
TRIM28-215ENST00000601150 CBWD2Q8IUF1 395 aa18.24■□□□□ 0.51
TRIM28-215ENST00000601150 CACTINQ8WUQ7 758 aaKnown RBP18.24■□□□□ 0.51
TRIM28-215ENST00000601150 NECAB3Q96P71 396 aaPredicted RBP18.24■□□□□ 0.51
TRIM28-215ENST00000601150 APOL5Q9BWW9 433 aa18.24■□□□□ 0.51
TRIM28-215ENST00000601150 PDE11AQ9HCR9 933 aa18.24■□□□□ 0.51
TRIM28-215ENST00000601150 MAN1C1Q9NR34 630 aa18.24■□□□□ 0.51
TRIM28-215ENST00000601150 PCDHB8Q9UN66 801 aa18.24■□□□□ 0.51
TRIM28-215ENST00000601150 BACE2Q9Y5Z0 518 aa18.24■□□□□ 0.51
TRIM28-215ENST00000601150 H7C4K7 107 aa18.23■□□□□ 0.51
TRIM28-215ENST00000601150 M0QZQ0 153 aa18.23■□□□□ 0.51
TRIM28-215ENST00000601150 PIRO00625 290 aa18.23■□□□□ 0.51
TRIM28-215ENST00000601150 PPEF2O14830 753 aa18.23■□□□□ 0.51
TRIM28-215ENST00000601150 KINO60870 393 aaKnown RBP18.23■□□□□ 0.51
TRIM28-215ENST00000601150 ITIH3Q06033 890 aa18.23■□□□□ 0.51
TRIM28-215ENST00000601150 SNRNP35Q16560 246 aaKnown RBP18.23■□□□□ 0.51
TRIM28-215ENST00000601150 RARS2Q5T160 578 aaKnown RBP18.23■□□□□ 0.51
TRIM28-215ENST00000601150 LILRA6Q6PI73 481 aa18.23■□□□□ 0.51
TRIM28-215ENST00000601150 C12orf76Q8N812 135 aaPredicted RBP18.23■□□□□ 0.51
TRIM28-215ENST00000601150 APPL2Q8NEU8 664 aa18.23■□□□□ 0.51
TRIM28-215ENST00000601150 HDAC7Q8WUI4 952 aa18.23■□□□□ 0.51
TRIM28-215ENST00000601150 ADAM7Q9H2U9 754 aa18.23■□□□□ 0.51
TRIM28-215ENST00000601150 KCTD10Q9H3F6 313 aa18.23■□□□□ 0.51
TRIM28-215ENST00000601150 SFXN1Q9H9B4 322 aa18.23■□□□□ 0.51
TRIM28-215ENST00000601150 RMND1Q9NWS8 449 aa18.23■□□□□ 0.51
TRIM28-215ENST00000601150 PRKAG3Q9UGI9 489 aa18.23■□□□□ 0.51
TRIM28-215ENST00000601150 TSC2P49815 1807 aa18.23■□□□□ 0.51
TRIM28-215ENST00000601150 C2orf16Q68DN1 1984 aa18.22■□□□□ 0.51
TRIM28-215ENST00000601150 PDXKO00764 312 aa18.22■□□□□ 0.51
TRIM28-215ENST00000601150 TGM5O43548 720 aa18.22■□□□□ 0.51
TRIM28-215ENST00000601150 SMC2O95347 1197 aa18.22■□□□□ 0.51
TRIM28-215ENST00000601150 OR1D2P34982 312 aa18.22■□□□□ 0.51
TRIM28-215ENST00000601150 LILRA4P59901 499 aa18.22■□□□□ 0.51
TRIM28-215ENST00000601150 DSTYKQ6XUX3 929 aa18.22■□□□□ 0.51
TRIM28-215ENST00000601150 RDH13Q8NBN7 331 aa18.22■□□□□ 0.51
TRIM28-215ENST00000601150 SUSD6Q92537 303 aa18.22■□□□□ 0.51
TRIM28-215ENST00000601150 GSDMAQ96QA5 445 aa18.22■□□□□ 0.51
TRIM28-215ENST00000601150 PLEKHA4Q9H4M7 779 aa18.22■□□□□ 0.51
TRIM28-215ENST00000601150 ADAM12O43184 909 aa18.21■□□□□ 0.51
TRIM28-215ENST00000601150 EXOC3O60645 756 aa18.21■□□□□ 0.51
TRIM28-215ENST00000601150 TMEM191BP0C7N4 346 aa18.21■□□□□ 0.51
TRIM28-215ENST00000601150 SPATA31D3P0C874 917 aa18.21■□□□□ 0.51
TRIM28-215ENST00000601150 UBE2HP62256 183 aa18.21■□□□□ 0.51
TRIM28-215ENST00000601150 RAB33AQ14088 237 aa18.21■□□□□ 0.51
TRIM28-215ENST00000601150 MRPL58Q14197 206 aaKnown RBP18.21■□□□□ 0.51
TRIM28-215ENST00000601150 RSPO2Q6UXX9 243 aaPredicted RBP18.21■□□□□ 0.51
TRIM28-215ENST00000601150 SPATA31D4Q6ZUB0 917 aa18.21■□□□□ 0.51
TRIM28-215ENST00000601150 SLC9A9Q8IVB4 645 aa18.21■□□□□ 0.51
TRIM28-215ENST00000601150 ADHFE1Q8IWW8 467 aa18.21■□□□□ 0.51
TRIM28-215ENST00000601150 ELOA2Q8IYF1 753 aaPredicted RBP18.21■□□□□ 0.51
TRIM28-215ENST00000601150 GUF1Q8N442 669 aaKnown RBP18.21■□□□□ 0.51
TRIM28-215ENST00000601150 KREMEN2Q8NCW0 462 aa18.21■□□□□ 0.51
TRIM28-215ENST00000601150 SMARCE1Q969G3 411 aa18.21■□□□□ 0.51
TRIM28-215ENST00000601150 POP1Q99575 1024 aaKnown RBP18.21■□□□□ 0.51
TRIM28-215ENST00000601150 ITGA11Q9UKX5 1188 aa18.21■□□□□ 0.51
TRIM28-215ENST00000601150 CDY1Q9Y6F8 540 aa18.21■□□□□ 0.51
TRIM28-215ENST00000601150 A0A0C4DFX4 3053 aa18.21■□□□□ 0.51
TRIM28-215ENST00000601150 DENND4AQ7Z401 1863 aa18.2■□□□□ 0.5
TRIM28-215ENST00000601150 ARHGEF37A1IGU5 675 aa18.2■□□□□ 0.5
TRIM28-215ENST00000601150 CALUO43852 315 aaPredicted RBP18.2■□□□□ 0.5
TRIM28-215ENST00000601150 ITGB3P05106 788 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms