RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 CWH43Q9H720 699 aa15.46■□□□□ 0.07
UPF1-211ENST00000600868 VRTNQ9H8Y1 702 aa15.46■□□□□ 0.07
UPF1-211ENST00000600868 GCNT4Q9P109 453 aa15.46■□□□□ 0.07
UPF1-211ENST00000600868 AGAP1Q9UPQ3 857 aa15.46■□□□□ 0.07
UPF1-211ENST00000600868 R3HCC1Q9Y3T6 440 aaKnown RBP15.46■□□□□ 0.07
UPF1-211ENST00000600868 A0A1W2PQC6 194 aa15.45■□□□□ 0.06
UPF1-211ENST00000600868 CASTOR2A6NHX0 329 aa15.45■□□□□ 0.06
UPF1-211ENST00000600868 PODXLO00592 558 aa15.45■□□□□ 0.06
UPF1-211ENST00000600868 TLL1O43897 1013 aa15.45■□□□□ 0.06
UPF1-211ENST00000600868 ZC3H11AO75152 810 aaKnown RBP eCLIP15.45■□□□□ 0.06
UPF1-211ENST00000600868 ASS1P00966 412 aaKnown RBP15.45■□□□□ 0.06
UPF1-211ENST00000600868 ALDH2P05091 517 aa15.45■□□□□ 0.06
UPF1-211ENST00000600868 PAX3P23760 479 aa15.45■□□□□ 0.06
UPF1-211ENST00000600868 PON1P27169 355 aa15.45■□□□□ 0.06
UPF1-211ENST00000600868 PBX1P40424 430 aa15.45■□□□□ 0.06
UPF1-211ENST00000600868 PNPLA4P41247 253 aa15.45■□□□□ 0.06
UPF1-211ENST00000600868 MYL6P60660 151 aa15.45■□□□□ 0.06
UPF1-211ENST00000600868 MYO1EQ12965 1108 aa15.45■□□□□ 0.06
UPF1-211ENST00000600868 SCARA3Q6AZY7 606 aa15.45■□□□□ 0.06
UPF1-211ENST00000600868 DCLRE1AQ6PJP8 1040 aa15.45■□□□□ 0.06
UPF1-211ENST00000600868 CCDC150Q8NCX0 1101 aa15.45■□□□□ 0.06
UPF1-211ENST00000600868 TAF4BQ92750 862 aa15.45■□□□□ 0.06
UPF1-211ENST00000600868 ZNF560Q96MR9 790 aa15.45■□□□□ 0.06
UPF1-211ENST00000600868 CRACR2AQ9BSW2 395 aa15.45■□□□□ 0.06
UPF1-211ENST00000600868 IMPG2Q9BZV3 1241 aa15.45■□□□□ 0.06
UPF1-211ENST00000600868 XYLT2Q9H1B5 865 aa15.45■□□□□ 0.06
UPF1-211ENST00000600868 DNAJB4Q9UDY4 337 aa15.45■□□□□ 0.06
UPF1-211ENST00000600868 SIK3Q9Y2K2 1263 aa15.45■□□□□ 0.06
UPF1-211ENST00000600868 TMEM189-UBE2V1I3L0A0 370 aa15.44■□□□□ 0.06
UPF1-211ENST00000600868 PPEF2O14830 753 aa15.44■□□□□ 0.06
UPF1-211ENST00000600868 GALTP07902 379 aa15.44■□□□□ 0.06
UPF1-211ENST00000600868 ZNF75DP51815 510 aa15.44■□□□□ 0.06
UPF1-211ENST00000600868 SYCP1Q15431 976 aa15.44■□□□□ 0.06
UPF1-211ENST00000600868 WDR44Q5JSH3 913 aa15.44■□□□□ 0.06
UPF1-211ENST00000600868 TRIM65Q6PJ69 517 aa15.44■□□□□ 0.06
UPF1-211ENST00000600868 TDHQ8IZJ6 230 aa15.44■□□□□ 0.06
UPF1-211ENST00000600868 FIBCD1Q8N539 461 aa15.44■□□□□ 0.06
UPF1-211ENST00000600868 MRFAP1L1Q96HT8 127 aa15.44■□□□□ 0.06
UPF1-211ENST00000600868 HPDLQ96IR7 371 aa15.44■□□□□ 0.06
UPF1-211ENST00000600868 FAXDC2Q96IV6 333 aa15.44■□□□□ 0.06
UPF1-211ENST00000600868 PAAF1Q9BRP4 392 aa15.44■□□□□ 0.06
UPF1-211ENST00000600868 INTS2Q9H0H0 1204 aaKnown RBP15.44■□□□□ 0.06
UPF1-211ENST00000600868 PRO3102Q9H379 93 aa15.44■□□□□ 0.06
UPF1-211ENST00000600868 PLCB1Q9NQ66 1216 aa15.44■□□□□ 0.06
UPF1-211ENST00000600868 HCSTQ9UBK5 93 aa15.44■□□□□ 0.06
UPF1-211ENST00000600868 CACNG4Q9UBN1 327 aa15.44■□□□□ 0.06
UPF1-211ENST00000600868 MRPL42Q9Y6G3 142 aaKnown RBP15.44■□□□□ 0.06
UPF1-211ENST00000600868 PDE4DIPQ5VU43 2346 aa15.44■□□□□ 0.06
UPF1-211ENST00000600868 HSFX4A0A1B0GTS1 333 aaPredicted RBP15.43■□□□□ 0.06
UPF1-211ENST00000600868 HSFX3A0A1B0GWH4 333 aaPredicted RBP15.43■□□□□ 0.06
UPF1-211ENST00000600868 NRP1O14786 923 aa15.43■□□□□ 0.06
UPF1-211ENST00000600868 LRRN2O75325 713 aa15.43■□□□□ 0.06
UPF1-211ENST00000600868 B3GAT3O94766 335 aa15.43■□□□□ 0.06
UPF1-211ENST00000600868 LAG3P18627 525 aa15.43■□□□□ 0.06
UPF1-211ENST00000600868 SLC9A1P19634 815 aa15.43■□□□□ 0.06
UPF1-211ENST00000600868 OR1G1P47890 313 aa15.43■□□□□ 0.06
UPF1-211ENST00000600868 SLC11A1P49279 550 aa15.43■□□□□ 0.06
UPF1-211ENST00000600868 ALDH7A1P49419 539 aaKnown RBP15.43■□□□□ 0.06
UPF1-211ENST00000600868 TAF6P49848 677 aa15.43■□□□□ 0.06
UPF1-211ENST00000600868 BCAR1P56945 870 aa15.43■□□□□ 0.06
UPF1-211ENST00000600868 LILRA4P59901 499 aa15.43■□□□□ 0.06
UPF1-211ENST00000600868 NOP14P78316 857 aaKnown RBP15.43■□□□□ 0.06
UPF1-211ENST00000600868 ZNF699Q32M78 642 aa15.43■□□□□ 0.06
UPF1-211ENST00000600868 DPY19L2P1Q6NXN4 242 aa15.43■□□□□ 0.06
UPF1-211ENST00000600868 CLP1Q92989 425 aaKnown RBP15.43■□□□□ 0.06
UPF1-211ENST00000600868 PI4K2AQ9BTU6 479 aa15.43■□□□□ 0.06
UPF1-211ENST00000600868 COLEC11Q9BWP8 271 aa15.43■□□□□ 0.06
UPF1-211ENST00000600868 GDAP2Q9NXN4 497 aa15.43■□□□□ 0.06
UPF1-211ENST00000600868 FAN1Q9Y2M0 1017 aa15.43■□□□□ 0.06
UPF1-211ENST00000600868 PCDHA11Q9Y5I1 949 aa15.43■□□□□ 0.06
UPF1-211ENST00000600868 KPNA7A9QM74 516 aa15.42■□□□□ 0.06
UPF1-211ENST00000600868 LINC00271P0C7V0 271 aa15.42■□□□□ 0.06
UPF1-211ENST00000600868 AARSP49588 968 aaKnown RBP eCLIP15.42■□□□□ 0.064e-6■■■■□ 24
UPF1-211ENST00000600868 RABGGTBP53611 331 aa15.42■□□□□ 0.06
UPF1-211ENST00000600868 SV2CQ496J9 727 aa15.42■□□□□ 0.06
UPF1-211ENST00000600868 ZNF667Q5HYK9 610 aa15.42■□□□□ 0.06
UPF1-211ENST00000600868 SPOUT1Q5T280 376 aaKnown RBP15.42■□□□□ 0.06
UPF1-211ENST00000600868 KLHDC7AQ5VTJ3 777 aa15.42■□□□□ 0.06
UPF1-211ENST00000600868 FAM109BQ6ICB4 259 aaPredicted RBP15.42■□□□□ 0.06
UPF1-211ENST00000600868 KCNT2Q6UVM3 1135 aa15.42■□□□□ 0.06
UPF1-211ENST00000600868 CD300LGQ6UXG3 332 aa15.42■□□□□ 0.06
UPF1-211ENST00000600868 C3orf58Q8NDZ4 430 aa15.42■□□□□ 0.06
UPF1-211ENST00000600868 NT5C1BQ96P26 610 aa15.42■□□□□ 0.06
UPF1-211ENST00000600868 LSM14BQ9BX40 385 aaKnown RBP15.42■□□□□ 0.06
UPF1-211ENST00000600868 APOBEC3GQ9HC16 384 aaKnown RBP15.42■□□□□ 0.06
UPF1-211ENST00000600868 SIX2Q9NPC8 291 aa15.42■□□□□ 0.06
UPF1-211ENST00000600868 AAASQ9NRG9 546 aa15.42■□□□□ 0.06
UPF1-211ENST00000600868 APEX2Q9UBZ4 518 aa15.42■□□□□ 0.06
UPF1-211ENST00000600868 PRG3Q9Y2Y8 225 aaPredicted RBP15.42■□□□□ 0.06
UPF1-211ENST00000600868 DAAM1Q9Y4D1 1078 aa15.42■□□□□ 0.06
UPF1-211ENST00000600868 SCN1AP35498 2009 aa15.42■□□□□ 0.06
UPF1-211ENST00000600868 ITIH6Q6UXX5 1313 aa15.42■□□□□ 0.06
UPF1-211ENST00000600868 LCHNA4D1U4 455 aa15.41■□□□□ 0.06
UPF1-211ENST00000600868 GRXCR1A8MXD5 290 aa15.41■□□□□ 0.06
UPF1-211ENST00000600868 SPTLC1O15269 473 aa15.41■□□□□ 0.06
UPF1-211ENST00000600868 KIF4AO95239 1232 aa15.41■□□□□ 0.06
UPF1-211ENST00000600868 ADCY5O95622 1261 aa15.41■□□□□ 0.06
UPF1-211ENST00000600868 P4HA1P13674 534 aa15.41■□□□□ 0.06
UPF1-211ENST00000600868 IGFBP6P24592 240 aaPredicted RBP15.41■□□□□ 0.06
UPF1-211ENST00000600868 KLK7P49862 253 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms