RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 GADD45GIP1Q8TAE8 222 aaPredicted RBP21.13■□□□□ 0.97
SHKBP1-221ENST00000599833 GOLGA5Q8TBA6 731 aa21.13■□□□□ 0.97
SHKBP1-221ENST00000599833 FEZF2Q8TBJ5 459 aa21.13■□□□□ 0.97
SHKBP1-221ENST00000599833 SMARCE1Q969G3 411 aa21.13■□□□□ 0.97
SHKBP1-221ENST00000599833 BORCS6Q96GS4 357 aa21.13■□□□□ 0.97
SHKBP1-221ENST00000599833 CCDC34Q96HJ3 373 aa21.13■□□□□ 0.97
SHKBP1-221ENST00000599833 TTPALQ9BTX7 342 aa21.13■□□□□ 0.97
SHKBP1-221ENST00000599833 KIAA1586Q9HCI6 787 aa21.13■□□□□ 0.97
SHKBP1-221ENST00000599833 SIX4Q9UIU6 781 aa21.13■□□□□ 0.97
SHKBP1-221ENST00000599833 BARX2Q9UMQ3 279 aaPredicted RBP21.13■□□□□ 0.97
SHKBP1-221ENST00000599833 GTF3C5Q9Y5Q8 519 aaPredicted RBP21.13■□□□□ 0.97
SHKBP1-221ENST00000599833 ZNF233A6NK53 670 aa21.12■□□□□ 0.97
SHKBP1-221ENST00000599833 M0QZQ0 153 aa21.12■□□□□ 0.97
SHKBP1-221ENST00000599833 ADAM12O43184 909 aa21.12■□□□□ 0.97
SHKBP1-221ENST00000599833 SMC2O95347 1197 aa21.12■□□□□ 0.97
SHKBP1-221ENST00000599833 NR3C1P04150 777 aa21.12■□□□□ 0.97
SHKBP1-221ENST00000599833 CD44P16070 742 aaKnown RBP21.12■□□□□ 0.97
SHKBP1-221ENST00000599833 KCNA5P22460 613 aa21.12■□□□□ 0.97
SHKBP1-221ENST00000599833 CASP4P49662 377 aa21.12■□□□□ 0.97
SHKBP1-221ENST00000599833 CLCN4P51793 760 aa21.12■□□□□ 0.97
SHKBP1-221ENST00000599833 PMS1P54277 932 aaKnown RBP21.12■□□□□ 0.97
SHKBP1-221ENST00000599833 MCCD1P59942 119 aaPredicted RBP21.12■□□□□ 0.97
SHKBP1-221ENST00000599833 ELAVL2Q12926 359 aaKnown RBP21.12■□□□□ 0.97
SHKBP1-221ENST00000599833 MORC3Q14149 939 aa21.12■□□□□ 0.97
SHKBP1-221ENST00000599833 MYBPC2Q14324 1141 aa21.12■□□□□ 0.97
SHKBP1-221ENST00000599833 LEXMQ3ZCV2 418 aa21.12■□□□□ 0.97
SHKBP1-221ENST00000599833 ADSSL1Q8N142 457 aa21.12■□□□□ 0.97
SHKBP1-221ENST00000599833 BEST2Q8NFU1 509 aa21.12■□□□□ 0.97
SHKBP1-221ENST00000599833 ATXN2LQ8WWM7 1075 aaKnown RBP21.12■□□□□ 0.97
SHKBP1-221ENST00000599833 PPP2R3CQ969Q6 453 aa21.12■□□□□ 0.97
SHKBP1-221ENST00000599833 CCDC47Q96A33 483 aaKnown RBP21.12■□□□□ 0.97
SHKBP1-221ENST00000599833 CLSTN3Q9BQT9 956 aa21.12■□□□□ 0.97
SHKBP1-221ENST00000599833 RMND1Q9NWS8 449 aa21.12■□□□□ 0.97
SHKBP1-221ENST00000599833 FNIP2Q9P278 1114 aa21.12■□□□□ 0.97
SHKBP1-221ENST00000599833 TTC28Q96AY4 2481 aa21.12■□□□□ 0.97
SHKBP1-221ENST00000599833 H3BQ06 376 aaPredicted RBP21.11■□□□□ 0.97
SHKBP1-221ENST00000599833 XPOTO43592 962 aaKnown RBP21.11■□□□□ 0.97
SHKBP1-221ENST00000599833 EPCAMP16422 314 aa21.11■□□□□ 0.97
SHKBP1-221ENST00000599833 RPL17P18621 184 aaKnown RBP21.11■□□□□ 0.97
SHKBP1-221ENST00000599833 LILRA4P59901 499 aa21.11■□□□□ 0.97
SHKBP1-221ENST00000599833 CLDN10P78369 228 aa21.11■□□□□ 0.97
SHKBP1-221ENST00000599833 PSMD6Q15008 389 aa21.11■□□□□ 0.97
SHKBP1-221ENST00000599833 LMBRD2Q68DH5 695 aaPredicted RBP21.11■□□□□ 0.97
SHKBP1-221ENST00000599833 CENPPQ6IPU0 288 aa21.11■□□□□ 0.97
SHKBP1-221ENST00000599833 SYCE2Q6PIF2 218 aa21.11■□□□□ 0.97
SHKBP1-221ENST00000599833 ZC3H3Q8IXZ2 948 aaKnown RBP21.11■□□□□ 0.97
SHKBP1-221ENST00000599833 RDH13Q8NBN7 331 aa21.11■□□□□ 0.97
SHKBP1-221ENST00000599833 GPT2Q8TD30 523 aa21.11■□□□□ 0.97
SHKBP1-221ENST00000599833 RIN2Q8WYP3 895 aaPredicted RBP21.11■□□□□ 0.97
SHKBP1-221ENST00000599833 ZNF516Q92618 1163 aa21.11■□□□□ 0.97
SHKBP1-221ENST00000599833 INTS13Q9NVM9 706 aa21.11■□□□□ 0.97
SHKBP1-221ENST00000599833 DPP3Q9NY33 737 aa21.11■□□□□ 0.97
SHKBP1-221ENST00000599833 TCF20Q9UGU0 1960 aaKnown RBP21.1■□□□□ 0.97
SHKBP1-221ENST00000599833 KCNQ1P51787 676 aa21.1■□□□□ 0.97
SHKBP1-221ENST00000599833 C1orf220Q5T0J3 134 aa21.1■□□□□ 0.97
SHKBP1-221ENST00000599833 LILRA6Q6PI73 481 aa21.1■□□□□ 0.97
SHKBP1-221ENST00000599833 ASB2Q96Q27 587 aa21.1■□□□□ 0.97
SHKBP1-221ENST00000599833 POP1Q99575 1024 aaKnown RBP21.1■□□□□ 0.97
SHKBP1-221ENST00000599833 MTMR12Q9C0I1 747 aa21.1■□□□□ 0.97
SHKBP1-221ENST00000599833 MTRRQ9UBK8 725 aa21.1■□□□□ 0.97
SHKBP1-221ENST00000599833 HOOK1Q9UJC3 728 aaKnown RBP21.1■□□□□ 0.97
SHKBP1-221ENST00000599833 SSX2IPQ9Y2D8 614 aa21.1■□□□□ 0.97
SHKBP1-221ENST00000599833 TRIOO75962 3097 aa21.1■□□□□ 0.97
SHKBP1-221ENST00000599833 C2orf16Q68DN1 1984 aa21.09■□□□□ 0.97
SHKBP1-221ENST00000599833 PPP1R3GB7ZBB8 358 aa21.09■□□□□ 0.97
SHKBP1-221ENST00000599833 SYN3O14994 580 aa21.09■□□□□ 0.97
SHKBP1-221ENST00000599833 AKAP3O75969 853 aa21.09■□□□□ 0.97
SHKBP1-221ENST00000599833 PAPLNO95428 1278 aa21.09■□□□□ 0.97
SHKBP1-221ENST00000599833 BMP1P13497 986 aa21.09■□□□□ 0.97
SHKBP1-221ENST00000599833 ISM2Q6H9L7 571 aa21.09■□□□□ 0.97
SHKBP1-221ENST00000599833 LLGL2Q6P1M3 1020 aa21.09■□□□□ 0.97
SHKBP1-221ENST00000599833 WDR49Q8IV35 697 aa21.09■□□□□ 0.97
SHKBP1-221ENST00000599833 SMRP1Q8NCR6 262 aa21.09■□□□□ 0.97
SHKBP1-221ENST00000599833 NOC3LQ8WTT2 800 aaKnown RBP21.09■□□□□ 0.97
SHKBP1-221ENST00000599833 CGRRF1Q99675 332 aa21.09■□□□□ 0.97
SHKBP1-221ENST00000599833 S1PR5Q9H228 398 aa21.09■□□□□ 0.97
SHKBP1-221ENST00000599833 CLSTN2Q9H4D0 955 aa21.09■□□□□ 0.97
SHKBP1-221ENST00000599833 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP21.09■□□□□ 0.97
SHKBP1-221ENST00000599833 KIAA1468Q9P260 1216 aa21.09■□□□□ 0.97
SHKBP1-221ENST00000599833 PCDHB8Q9UN66 801 aa21.09■□□□□ 0.97
SHKBP1-221ENST00000599833 BDP1A6H8Y1 2624 aa21.08■□□□□ 0.97
SHKBP1-221ENST00000599833 FSD2A1L4K1 749 aa21.08■□□□□ 0.97
SHKBP1-221ENST00000599833 GRXCR2A6NFK2 248 aa21.08■□□□□ 0.97
SHKBP1-221ENST00000599833 EXOC3O60645 756 aa21.08■□□□□ 0.97
SHKBP1-221ENST00000599833 KIF20AO95235 890 aa21.08■□□□□ 0.97
SHKBP1-221ENST00000599833 ITGB3P05106 788 aa21.08■□□□□ 0.97
SHKBP1-221ENST00000599833 DLG4P78352 724 aa21.08■□□□□ 0.97
SHKBP1-221ENST00000599833 MRPS5P82675 430 aaKnown RBP21.08■□□□□ 0.97
SHKBP1-221ENST00000599833 TFAMQ00059 246 aaKnown RBP21.08■□□□□ 0.97
SHKBP1-221ENST00000599833 PSMD5Q16401 504 aa21.08■□□□□ 0.97
SHKBP1-221ENST00000599833 CAMK4Q16566 473 aa21.08■□□□□ 0.97
SHKBP1-221ENST00000599833 EDRF1Q3B7T1 1238 aa21.08■□□□□ 0.97
SHKBP1-221ENST00000599833 VARS2Q5ST30 1063 aaKnown RBP21.08■□□□□ 0.97
SHKBP1-221ENST00000599833 ANKRD54Q6NXT1 300 aa21.08■□□□□ 0.97
SHKBP1-221ENST00000599833 CEP57Q86XR8 500 aa21.08■□□□□ 0.97
SHKBP1-221ENST00000599833 PARD3BQ8TEW8 1205 aa21.08■□□□□ 0.97
SHKBP1-221ENST00000599833 GBP4Q96PP9 640 aa21.08■□□□□ 0.97
SHKBP1-221ENST00000599833 EMILIN2Q9BXX0 1053 aa21.08■□□□□ 0.97
SHKBP1-221ENST00000599833 BACE2Q9Y5Z0 518 aa21.08■□□□□ 0.97
SHKBP1-221ENST00000599833 NCOR1O75376 2440 aa21.07■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms