RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 CLSTN1O94985 981 aa18.25■□□□□ 0.51
SHKBP1-216ENST00000598201 CFHP08603 1231 aa18.25■□□□□ 0.51
SHKBP1-216ENST00000598201 CXCL8P10145 99 aa18.25■□□□□ 0.51
SHKBP1-216ENST00000598201 TMOD1P28289 359 aa18.25■□□□□ 0.51
SHKBP1-216ENST00000598201 PLA2G4AP47712 749 aa18.25■□□□□ 0.51
SHKBP1-216ENST00000598201 TFAMQ00059 246 aaKnown RBP18.25■□□□□ 0.51
SHKBP1-216ENST00000598201 DUOXA2Q1HG44 320 aa18.25■□□□□ 0.51
SHKBP1-216ENST00000598201 TMEM270Q6UE05 265 aa18.25■□□□□ 0.51
SHKBP1-216ENST00000598201 CTU1Q7Z7A3 348 aaKnown RBP18.25■□□□□ 0.51
SHKBP1-216ENST00000598201 KIAA0319LQ8IZA0 1049 aa18.25■□□□□ 0.51
SHKBP1-216ENST00000598201 TMEM130Q8N3G9 435 aa18.25■□□□□ 0.51
SHKBP1-216ENST00000598201 SETD4Q9NVD3 440 aa18.25■□□□□ 0.51
SHKBP1-216ENST00000598201 GNEQ9Y223 722 aaKnown RBP18.25■□□□□ 0.51
SHKBP1-216ENST00000598201 ATP8B1O43520 1251 aa18.24■□□□□ 0.51
SHKBP1-216ENST00000598201 CYP1A2P05177 515 aa18.24■□□□□ 0.51
SHKBP1-216ENST00000598201 MYBL2P10244 700 aa18.24■□□□□ 0.51
SHKBP1-216ENST00000598201 UNGP13051 313 aaPredicted RBP18.24■□□□□ 0.51
SHKBP1-216ENST00000598201 CYP2C19P33261 490 aa18.24■□□□□ 0.51
SHKBP1-216ENST00000598201 DCAF12L1Q5VU92 463 aa18.24■□□□□ 0.51
SHKBP1-216ENST00000598201 OLFML2BQ68BL8 750 aa18.24■□□□□ 0.51
SHKBP1-216ENST00000598201 ACTRT1Q8TDG2 376 aa18.24■□□□□ 0.51
SHKBP1-216ENST00000598201 ZNF653Q96CK0 615 aa18.24■□□□□ 0.51
SHKBP1-216ENST00000598201 PDZD7Q9H5P4 517 aa18.24■□□□□ 0.51
SHKBP1-216ENST00000598201 TMEM59LQ9UK28 342 aa18.24■□□□□ 0.51
SHKBP1-216ENST00000598201 CNTN6Q9UQ52 1028 aa18.24■□□□□ 0.51
SHKBP1-216ENST00000598201 PTPN22Q9Y2R2 807 aa18.24■□□□□ 0.51
SHKBP1-216ENST00000598201 ALG6Q9Y672 507 aa18.24■□□□□ 0.51
SHKBP1-216ENST00000598201 B4GALT4O60513 344 aa18.24■□□□□ 0.51
SHKBP1-216ENST00000598201 ZNF865P0CJ78 1059 aaPredicted RBP18.24■□□□□ 0.51
SHKBP1-216ENST00000598201 TBXAS1P24557 533 aaPredicted RBP18.24■□□□□ 0.51
SHKBP1-216ENST00000598201 SURF1Q15526 300 aa18.24■□□□□ 0.51
SHKBP1-216ENST00000598201 GSPT2Q8IYD1 628 aaKnown RBP18.24■□□□□ 0.51
SHKBP1-216ENST00000598201 UBR7Q8N806 425 aa18.24■□□□□ 0.51
SHKBP1-216ENST00000598201 RBBP8NLQ8NC74 664 aaPredicted RBP18.24■□□□□ 0.51
SHKBP1-216ENST00000598201 NLRP7Q8WX94 980 aa18.24■□□□□ 0.51
SHKBP1-216ENST00000598201 GTF3C4Q9UKN8 822 aa18.24■□□□□ 0.51
SHKBP1-216ENST00000598201 A6NJR5 290 aa18.23■□□□□ 0.51
SHKBP1-216ENST00000598201 TMEM110-MUSTN1A8MSY1 372 aa18.23■□□□□ 0.51
SHKBP1-216ENST00000598201 MTA2O94776 668 aa18.23■□□□□ 0.51
SHKBP1-216ENST00000598201 ARF4P18085 180 aaPredicted RBP18.23■□□□□ 0.51
SHKBP1-216ENST00000598201 SSTR3P32745 418 aaPredicted RBP18.23■□□□□ 0.51
SHKBP1-216ENST00000598201 BPIFB4P59827 614 aa18.23■□□□□ 0.51
SHKBP1-216ENST00000598201 C11orf63Q6NUN7 778 aa18.23■□□□□ 0.51
SHKBP1-216ENST00000598201 ZNF677Q86XU0 584 aa18.23■□□□□ 0.51
SHKBP1-216ENST00000598201 KRT222Q8N1A0 295 aa18.23■□□□□ 0.51
SHKBP1-216ENST00000598201 RASGEF1CQ8N431 466 aa18.23■□□□□ 0.51
SHKBP1-216ENST00000598201 CPA5Q8WXQ8 436 aa18.23■□□□□ 0.51
SHKBP1-216ENST00000598201 BTBD6Q96KE9 485 aa18.23■□□□□ 0.51
SHKBP1-216ENST00000598201 SELENOOQ9BVL4 669 aa18.23■□□□□ 0.51
SHKBP1-216ENST00000598201 NUP85Q9BW27 656 aa18.23■□□□□ 0.51
SHKBP1-216ENST00000598201 IMPG2Q9BZV3 1241 aa18.23■□□□□ 0.51
SHKBP1-216ENST00000598201 PTCH2Q9Y6C5 1203 aa18.23■□□□□ 0.51
SHKBP1-216ENST00000598201 MAP2K7O14733 419 aa18.22■□□□□ 0.51
SHKBP1-216ENST00000598201 STAG3L1P0CL83 205 aa18.22■□□□□ 0.51
SHKBP1-216ENST00000598201 CCDC70Q6NSX1 233 aa18.22■□□□□ 0.51
SHKBP1-216ENST00000598201 C8orf74Q6P047 294 aa18.22■□□□□ 0.51
SHKBP1-216ENST00000598201 CCNI2Q6ZMN8 369 aaPredicted RBP18.22■□□□□ 0.51
SHKBP1-216ENST00000598201 CPNE8Q86YQ8 564 aa18.22■□□□□ 0.51
SHKBP1-216ENST00000598201 KAT2BQ92831 832 aa18.22■□□□□ 0.51
SHKBP1-216ENST00000598201 CYFIP2Q96F07 1278 aa18.22■□□□□ 0.51
SHKBP1-216ENST00000598201 XYLT2Q9H1B5 865 aa18.22■□□□□ 0.51
SHKBP1-216ENST00000598201 RPF1Q9H9Y2 349 aaKnown RBP18.22■□□□□ 0.51
SHKBP1-216ENST00000598201 NOC2LQ9Y3T9 749 aaKnown RBP18.22■□□□□ 0.51
SHKBP1-216ENST00000598201 ANK1P16157 1881 aa18.22■□□□□ 0.51
SHKBP1-216ENST00000598201 ZEB2O60315 1214 aa18.22■□□□□ 0.51
SHKBP1-216ENST00000598201 CYP1A1P04798 512 aaPredicted RBP18.22■□□□□ 0.51
SHKBP1-216ENST00000598201 NFICP08651 508 aa18.22■□□□□ 0.51
SHKBP1-216ENST00000598201 TMEM191BP0C7N4 346 aa18.22■□□□□ 0.51
SHKBP1-216ENST00000598201 MCF2P10911 925 aa18.22■□□□□ 0.51
SHKBP1-216ENST00000598201 ELNP15502 786 aa18.22■□□□□ 0.51
SHKBP1-216ENST00000598201 GNA15P30679 374 aa18.22■□□□□ 0.51
SHKBP1-216ENST00000598201 MESDQ14696 234 aa18.22■□□□□ 0.51
SHKBP1-216ENST00000598201 NAA35Q5VZE5 725 aa18.22■□□□□ 0.51
SHKBP1-216ENST00000598201 ZNF564Q8TBZ8 553 aaPredicted RBP18.22■□□□□ 0.51
SHKBP1-216ENST00000598201 PXYLP1Q8TE99 480 aa18.22■□□□□ 0.51
SHKBP1-216ENST00000598201 TRIB2Q92519 343 aa18.22■□□□□ 0.51
SHKBP1-216ENST00000598201 ALG3Q92685 438 aa18.22■□□□□ 0.51
SHKBP1-216ENST00000598201 KRT12Q99456 494 aa18.22■□□□□ 0.51
SHKBP1-216ENST00000598201 BUD13Q9BRD0 619 aaKnown RBP eCLIP18.22■□□□□ 0.517e-6■■■■□ 21.2
SHKBP1-216ENST00000598201 LACTBL1A8MY62 500 aa18.21■□□□□ 0.51
SHKBP1-216ENST00000598201 PGRMC1O00264 195 aaKnown RBP18.21■□□□□ 0.51
SHKBP1-216ENST00000598201 TSPAN1O60635 241 aa18.21■□□□□ 0.51
SHKBP1-216ENST00000598201 FGFR4P22455 802 aa18.21■□□□□ 0.51
SHKBP1-216ENST00000598201 MCM3P25205 808 aa18.21■□□□□ 0.51
SHKBP1-216ENST00000598201 ZNF132P52740 706 aa18.21■□□□□ 0.51
SHKBP1-216ENST00000598201 TRPC3Q13507 836 aa18.21■□□□□ 0.51
SHKBP1-216ENST00000598201 SGSM1Q2NKQ1 1148 aa18.21■□□□□ 0.51
SHKBP1-216ENST00000598201 C2CD6Q53TS8 623 aa18.21■□□□□ 0.51
SHKBP1-216ENST00000598201 TLK2Q86UE8 772 aa18.21■□□□□ 0.51
SHKBP1-216ENST00000598201 PASD1Q8IV76 773 aa18.21■□□□□ 0.51
SHKBP1-216ENST00000598201 MCOLN2Q8IZK6 566 aa18.21■□□□□ 0.51
SHKBP1-216ENST00000598201 SCLT1Q96NL6 688 aa18.21■□□□□ 0.51
SHKBP1-216ENST00000598201 AP1M1Q9BXS5 423 aa18.21■□□□□ 0.51
SHKBP1-216ENST00000598201 PLEKHA4Q9H4M7 779 aa18.21■□□□□ 0.51
SHKBP1-216ENST00000598201 CNOT8Q9UFF9 292 aaKnown RBP18.21■□□□□ 0.51
SHKBP1-216ENST00000598201 HTTP42858 3142 aa18.21■□□□□ 0.51
SHKBP1-216ENST00000598201 CENPFP49454 3210 aa18.21■□□□□ 0.51
SHKBP1-216ENST00000598201 F2P00734 622 aa18.21■□□□□ 0.51
SHKBP1-216ENST00000598201 SMIM10L2AP0DMW4 78 aa18.21■□□□□ 0.51
SHKBP1-216ENST00000598201 SMIM10L2BP0DMW5 78 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms