RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 NOP14P78316 857 aaKnown RBP16.38■□□□□ 0.21
TRIM28-209ENST00000597423 ARHGAP44Q17R89 818 aa16.38■□□□□ 0.21
TRIM28-209ENST00000597423 HELQQ8TDG4 1101 aa16.38■□□□□ 0.21
TRIM28-209ENST00000597423 LPPQ93052 612 aa16.38■□□□□ 0.21
TRIM28-209ENST00000597423 TATDN2Q93075 761 aa16.38■□□□□ 0.21
TRIM28-209ENST00000597423 ZNF560Q96MR9 790 aa16.38■□□□□ 0.21
TRIM28-209ENST00000597423 ZNF830Q96NB3 372 aaPredicted RBP16.38■□□□□ 0.21
TRIM28-209ENST00000597423 PI4K2AQ9BTU6 479 aa16.38■□□□□ 0.21
TRIM28-209ENST00000597423 NIF3L1Q9GZT8 377 aa16.38■□□□□ 0.21
TRIM28-209ENST00000597423 VRTNQ9H8Y1 702 aa16.38■□□□□ 0.21
TRIM28-209ENST00000597423 TRIM43BA6NCK2 446 aa16.37■□□□□ 0.21
TRIM28-209ENST00000597423 ARHGAP6O43182 974 aa16.37■□□□□ 0.21
TRIM28-209ENST00000597423 LRPAP1P30533 357 aa16.37■□□□□ 0.21
TRIM28-209ENST00000597423 MLH1P40692 756 aa16.37■□□□□ 0.21
TRIM28-209ENST00000597423 JAM2P57087 298 aa16.37■□□□□ 0.21
TRIM28-209ENST00000597423 TNNC1P63316 161 aa16.37■□□□□ 0.21
TRIM28-209ENST00000597423 APBA1Q02410 837 aa16.37■□□□□ 0.21
TRIM28-209ENST00000597423 GOLGA8FQ08AF8 430 aa16.37■□□□□ 0.21
TRIM28-209ENST00000597423 GOLGA8DPQ0D2H9 430 aa16.37■□□□□ 0.21
TRIM28-209ENST00000597423 CUL2Q13617 745 aa16.37■□□□□ 0.21
TRIM28-209ENST00000597423 MEA1Q16626 185 aa16.37■□□□□ 0.21
TRIM28-209ENST00000597423 GLRA4Q5JXX5 417 aa16.37■□□□□ 0.21
TRIM28-209ENST00000597423 C9orf57Q5W0N0 161 aa16.37■□□□□ 0.21
TRIM28-209ENST00000597423 GJB7Q6PEY0 223 aa16.37■□□□□ 0.21
TRIM28-209ENST00000597423 VPS36Q86VN1 386 aa16.37■□□□□ 0.21
TRIM28-209ENST00000597423 ARHGEF19Q8IW93 802 aa16.37■□□□□ 0.21
TRIM28-209ENST00000597423 TRIM43Q96BQ3 446 aaPredicted RBP16.37■□□□□ 0.21
TRIM28-209ENST00000597423 CCDC42Q96M95 316 aa16.37■□□□□ 0.21
TRIM28-209ENST00000597423 UROC1Q96N76 676 aa16.37■□□□□ 0.21
TRIM28-209ENST00000597423 PPP1R10Q96QC0 940 aaKnown RBP16.37■□□□□ 0.21
TRIM28-209ENST00000597423 CYP3A43Q9HB55 503 aa16.37■□□□□ 0.21
TRIM28-209ENST00000597423 SIX4Q9UIU6 781 aa16.37■□□□□ 0.21
TRIM28-209ENST00000597423 F8VZ95 297 aa16.36■□□□□ 0.21
TRIM28-209ENST00000597423 FOXN3O00409 490 aaPredicted RBP16.36■□□□□ 0.21
TRIM28-209ENST00000597423 PTGESO14684 152 aa16.36■□□□□ 0.21
TRIM28-209ENST00000597423 INPPL1O15357 1258 aa16.36■□□□□ 0.21
TRIM28-209ENST00000597423 IPO7O95373 1038 aaKnown RBP16.36■□□□□ 0.21
TRIM28-209ENST00000597423 FECHP22830 423 aa16.36■□□□□ 0.21
TRIM28-209ENST00000597423 ANXA13P27216 316 aa16.36■□□□□ 0.21
TRIM28-209ENST00000597423 USP8P40818 1118 aa16.36■□□□□ 0.21
TRIM28-209ENST00000597423 KLHL30Q0D2K2 578 aa16.36■□□□□ 0.21
TRIM28-209ENST00000597423 GRIK3Q13003 919 aa16.36■□□□□ 0.21
TRIM28-209ENST00000597423 WDR72Q3MJ13 1102 aa16.36■□□□□ 0.21
TRIM28-209ENST00000597423 NOMO2Q5JPE7 1267 aa16.36■□□□□ 0.21
TRIM28-209ENST00000597423 NPAS4Q8IUM7 802 aa16.36■□□□□ 0.21
TRIM28-209ENST00000597423 CCDC170Q8IYT3 715 aa16.36■□□□□ 0.21
TRIM28-209ENST00000597423 C18orf25Q96B23 403 aaPredicted RBP16.36■□□□□ 0.21
TRIM28-209ENST00000597423 ZFP42Q96MM3 310 aa16.36■□□□□ 0.21
TRIM28-209ENST00000597423 FAM193BQ96PV7 902 aaPredicted RBP16.36■□□□□ 0.21
TRIM28-209ENST00000597423 XYLT2Q9H1B5 865 aa16.36■□□□□ 0.21
TRIM28-209ENST00000597423 DEF6Q9H4E7 631 aa16.36■□□□□ 0.21
TRIM28-209ENST00000597423 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.36■□□□□ 0.212e-9■■■■■ 29.5
TRIM28-209ENST00000597423 NXF1Q9UBU9 619 aaKnown RBP16.36■□□□□ 0.21
TRIM28-209ENST00000597423 NUB1Q9Y5A7 615 aa16.36■□□□□ 0.21
TRIM28-209ENST00000597423 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.36■□□□□ 0.21
TRIM28-209ENST00000597423 CENPFP49454 3210 aa16.36■□□□□ 0.21
TRIM28-209ENST00000597423 ANO9A1A5B4 782 aa16.35■□□□□ 0.21
TRIM28-209ENST00000597423 PIRO00625 290 aa16.35■□□□□ 0.21
TRIM28-209ENST00000597423 AMHP03971 560 aa16.35■□□□□ 0.21
TRIM28-209ENST00000597423 CYLC1P35663 651 aaPredicted RBP16.35■□□□□ 0.21
TRIM28-209ENST00000597423 SCNN1GP51170 649 aa16.35■□□□□ 0.21
TRIM28-209ENST00000597423 ARID5AQ03989 594 aa16.35■□□□□ 0.21
TRIM28-209ENST00000597423 PPIGQ13427 754 aaKnown RBP eCLIP16.35■□□□□ 0.211e-32■□□□□ 10.1
TRIM28-209ENST00000597423 SV2CQ496J9 727 aa16.35■□□□□ 0.21
TRIM28-209ENST00000597423 LINC01599Q8WXQ3 324 aa16.35■□□□□ 0.21
TRIM28-209ENST00000597423 SHC3Q92529 594 aa16.35■□□□□ 0.21
TRIM28-209ENST00000597423 FAM84AQ96KN4 292 aa16.35■□□□□ 0.21
TRIM28-209ENST00000597423 APOBEC3GQ9HC16 384 aaKnown RBP16.35■□□□□ 0.21
TRIM28-209ENST00000597423 TUBGCP4Q9UGJ1 667 aa16.35■□□□□ 0.21
TRIM28-209ENST00000597423 INPP5FQ9Y2H2 1132 aa16.35■□□□□ 0.21
TRIM28-209ENST00000597423 SSU72P8A0A1W2PR75 194 aa16.34■□□□□ 0.21
TRIM28-209ENST00000597423 ARHGEF37A1IGU5 675 aa16.34■□□□□ 0.21
TRIM28-209ENST00000597423 MEIS3P2A8K0S8 358 aa16.34■□□□□ 0.21
TRIM28-209ENST00000597423 CCP110O43303 1012 aa16.34■□□□□ 0.21
TRIM28-209ENST00000597423 LRRN2O75325 713 aa16.34■□□□□ 0.21
TRIM28-209ENST00000597423 GFPT2O94808 682 aa16.34■□□□□ 0.21
TRIM28-209ENST00000597423 BAIAP3O94812 1187 aa16.34■□□□□ 0.21
TRIM28-209ENST00000597423 POMCP01189 267 aa16.34■□□□□ 0.21
TRIM28-209ENST00000597423 FAM163BP0C2L3 166 aa16.34■□□□□ 0.21
TRIM28-209ENST00000597423 KRT5P13647 590 aa16.34■□□□□ 0.21
TRIM28-209ENST00000597423 PRKCIP41743 596 aa16.34■□□□□ 0.21
TRIM28-209ENST00000597423 KCNJ6P48051 423 aa16.34■□□□□ 0.21
TRIM28-209ENST00000597423 TAF6P49848 677 aa16.34■□□□□ 0.21
TRIM28-209ENST00000597423 CCZ1BP86790 482 aa16.34■□□□□ 0.21
TRIM28-209ENST00000597423 CCZ1P86791 482 aaPredicted RBP16.34■□□□□ 0.21
TRIM28-209ENST00000597423 PTK2Q05397 1052 aa16.34■□□□□ 0.21
TRIM28-209ENST00000597423 RNASELQ05823 741 aaKnown RBP16.34■□□□□ 0.21
TRIM28-209ENST00000597423 TUSC3Q13454 348 aa16.34■□□□□ 0.21
TRIM28-209ENST00000597423 TDRD12Q587J7 1177 aaKnown RBP16.34■□□□□ 0.21
TRIM28-209ENST00000597423 SPOPLQ6IQ16 392 aa16.34■□□□□ 0.21
TRIM28-209ENST00000597423 FAM71AQ8IYT1 594 aa16.34■□□□□ 0.21
TRIM28-209ENST00000597423 GSTCDQ8NEC7 633 aa16.34■□□□□ 0.21
TRIM28-209ENST00000597423 CXorf38Q8TB03 319 aa16.34■□□□□ 0.21
TRIM28-209ENST00000597423 KREMEN1Q96MU8 473 aa16.34■□□□□ 0.21
TRIM28-209ENST00000597423 MMS19Q96T76 1030 aa16.34■□□□□ 0.21
TRIM28-209ENST00000597423 MRPL9Q9BYD2 267 aaKnown RBP16.34■□□□□ 0.21
TRIM28-209ENST00000597423 NHEJ1Q9H9Q4 299 aaPredicted RBP16.34■□□□□ 0.21
TRIM28-209ENST00000597423 IL23AQ9NPF7 189 aa16.34■□□□□ 0.21
TRIM28-209ENST00000597423 ZKSCAN5Q9Y2L8 839 aa16.34■□□□□ 0.21
TRIM28-209ENST00000597423 PCDHB4Q9Y5E5 795 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms