RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 FLCNQ8NFG4 579 aa13.09□□□□□ -0.31
SHKBP1-213ENST00000597325 EEF2KMTQ96G04 330 aa13.09□□□□□ -0.31
SHKBP1-213ENST00000597325 CNOT6LQ96LI5 555 aaKnown RBP13.09□□□□□ -0.31
SHKBP1-213ENST00000597325 RTP3Q9BQQ7 232 aa13.09□□□□□ -0.31
SHKBP1-213ENST00000597325 TRIM6Q9C030 488 aaPredicted RBP13.09□□□□□ -0.31
SHKBP1-213ENST00000597325 PDZD7Q9H5P4 517 aa13.09□□□□□ -0.31
SHKBP1-213ENST00000597325 KIAA1586Q9HCI6 787 aa13.09□□□□□ -0.31
SHKBP1-213ENST00000597325 SAMSN1Q9NSI8 373 aaKnown RBP13.09□□□□□ -0.31
SHKBP1-213ENST00000597325 AGO2Q9UKV8 859 aaKnown RBP13.09□□□□□ -0.31
SHKBP1-213ENST00000597325 MRPL42Q9Y6G3 142 aaKnown RBP13.09□□□□□ -0.31
SHKBP1-213ENST00000597325 STYXL1Q9Y6J8 313 aa13.09□□□□□ -0.31
SHKBP1-213ENST00000597325 ASH1LQ9NR48 2969 aaKnown RBP13.09□□□□□ -0.31
SHKBP1-213ENST00000597325 GCN1Q92616 2671 aaKnown RBP13.09□□□□□ -0.31
SHKBP1-213ENST00000597325 A0A0B4J269 797 aa13.08□□□□□ -0.32
SHKBP1-213ENST00000597325 TTLL13PA6NNM8 815 aa13.08□□□□□ -0.32
SHKBP1-213ENST00000597325 KCNJ18B7U540 433 aa13.08□□□□□ -0.32
SHKBP1-213ENST00000597325 EXTL3O43909 919 aa13.08□□□□□ -0.32
SHKBP1-213ENST00000597325 DGKIO75912 1065 aa13.08□□□□□ -0.32
SHKBP1-213ENST00000597325 ASGR2P07307 311 aa13.08□□□□□ -0.32
SHKBP1-213ENST00000597325 MCF2P10911 925 aa13.08□□□□□ -0.32
SHKBP1-213ENST00000597325 KRT13P13646 458 aa13.08□□□□□ -0.32
SHKBP1-213ENST00000597325 SDHBP21912 280 aa13.08□□□□□ -0.32
SHKBP1-213ENST00000597325 EEF1GP26641 437 aaKnown RBP13.08□□□□□ -0.32
SHKBP1-213ENST00000597325 CD52P31358 61 aa13.08□□□□□ -0.32
SHKBP1-213ENST00000597325 MTIF2P46199 727 aaKnown RBP13.08□□□□□ -0.32
SHKBP1-213ENST00000597325 PLCB2Q00722 1185 aa13.08□□□□□ -0.32
SHKBP1-213ENST00000597325 MCL1Q07820 350 aa13.08□□□□□ -0.32
SHKBP1-213ENST00000597325 KCNJ12Q14500 433 aa13.08□□□□□ -0.32
SHKBP1-213ENST00000597325 UVSSAQ2YD98 709 aa13.08□□□□□ -0.32
SHKBP1-213ENST00000597325 CDKAL1Q5VV42 579 aa13.08□□□□□ -0.32
SHKBP1-213ENST00000597325 TWF2Q6IBS0 349 aaKnown RBP13.08□□□□□ -0.32
SHKBP1-213ENST00000597325 ANKRD54Q6NXT1 300 aa13.08□□□□□ -0.32
SHKBP1-213ENST00000597325 SLC27A1Q6PCB7 646 aa13.08□□□□□ -0.32
SHKBP1-213ENST00000597325 FILIP1Q7Z7B0 1213 aa13.08□□□□□ -0.32
SHKBP1-213ENST00000597325 FAM186BQ8IYM0 893 aa13.08□□□□□ -0.32
SHKBP1-213ENST00000597325 CRIPAKQ8N1N5 446 aa13.08□□□□□ -0.32
SHKBP1-213ENST00000597325 SUMF1Q8NBK3 374 aa13.08□□□□□ -0.32
SHKBP1-213ENST00000597325 TMEM174Q8WUU8 243 aa13.08□□□□□ -0.32
SHKBP1-213ENST00000597325 SAAL1Q96ER3 474 aa13.08□□□□□ -0.32
SHKBP1-213ENST00000597325 ZBTB45Q96K62 511 aaPredicted RBP13.08□□□□□ -0.32
SHKBP1-213ENST00000597325 CDCA3Q99618 268 aaPredicted RBP13.08□□□□□ -0.32
SHKBP1-213ENST00000597325 MKNK1Q9BUB5 465 aa13.08□□□□□ -0.32
SHKBP1-213ENST00000597325 CDT1Q9H211 546 aa13.08□□□□□ -0.32
SHKBP1-213ENST00000597325 GRPEL1Q9HAV7 217 aa13.08□□□□□ -0.32
SHKBP1-213ENST00000597325 METTL14Q9HCE5 456 aaKnown RBP13.08□□□□□ -0.32
SHKBP1-213ENST00000597325 ERVK-5Q9HDB9 667 aa13.08□□□□□ -0.32
SHKBP1-213ENST00000597325 DMAC2Q9NW81 257 aa13.08□□□□□ -0.32
SHKBP1-213ENST00000597325 CDH22Q9UJ99 828 aa13.08□□□□□ -0.32
SHKBP1-213ENST00000597325 ST3GAL5Q9UNP4 418 aa13.08□□□□□ -0.32
SHKBP1-213ENST00000597325 LAMA5O15230 3695 aa13.07□□□□□ -0.32
SHKBP1-213ENST00000597325 CEP295Q9C0D2 2601 aa13.07□□□□□ -0.32
SHKBP1-213ENST00000597325 A0A1B0GUA9 196 aa13.07□□□□□ -0.32
SHKBP1-213ENST00000597325 FSD2A1L4K1 749 aa13.07□□□□□ -0.32
SHKBP1-213ENST00000597325 GOLGA8IPA6NC78 632 aa13.07□□□□□ -0.32
SHKBP1-213ENST00000597325 GOLGA8JA6NMD2 632 aa13.07□□□□□ -0.32
SHKBP1-213ENST00000597325 TULP1O00294 542 aaPredicted RBP13.07□□□□□ -0.32
SHKBP1-213ENST00000597325 OGTO15294 1046 aa13.07□□□□□ -0.32
SHKBP1-213ENST00000597325 NPTXRO95502 500 aa13.07□□□□□ -0.32
SHKBP1-213ENST00000597325 SERPINC1P01008 464 aa13.07□□□□□ -0.32
SHKBP1-213ENST00000597325 ZNF18P17022 549 aa13.07□□□□□ -0.32
SHKBP1-213ENST00000597325 ZSCAN20P17040 1043 aaPredicted RBP13.07□□□□□ -0.32
SHKBP1-213ENST00000597325 PROZP22891 400 aa13.07□□□□□ -0.32
SHKBP1-213ENST00000597325 ADSSP30520 456 aa13.07□□□□□ -0.32
SHKBP1-213ENST00000597325 SNRNP35Q16560 246 aaKnown RBP13.07□□□□□ -0.32
SHKBP1-213ENST00000597325 KYAT1Q16773 422 aa13.07□□□□□ -0.32
SHKBP1-213ENST00000597325 TCP11X2Q5H9J9 407 aa13.07□□□□□ -0.32
SHKBP1-213ENST00000597325 EEF1DP3Q658K8 133 aa13.07□□□□□ -0.32
SHKBP1-213ENST00000597325 USP37Q86T82 979 aa13.07□□□□□ -0.32
SHKBP1-213ENST00000597325 CDR2LQ86X02 465 aaPredicted RBP13.07□□□□□ -0.32
SHKBP1-213ENST00000597325 FAM213AQ9BRX8 229 aa13.07□□□□□ -0.32
SHKBP1-213ENST00000597325 PTPRHQ9HD43 1115 aa13.07□□□□□ -0.32
SHKBP1-213ENST00000597325 CHST12Q9NRB3 414 aa13.07□□□□□ -0.32
SHKBP1-213ENST00000597325 ARMCX3Q9UH62 379 aaPredicted RBP13.07□□□□□ -0.32
SHKBP1-213ENST00000597325 PADI3Q9ULW8 664 aa13.07□□□□□ -0.32
SHKBP1-213ENST00000597325 ZNF233A6NK53 670 aa13.06□□□□□ -0.32
SHKBP1-213ENST00000597325 MAPK13O15264 365 aa13.06□□□□□ -0.32
SHKBP1-213ENST00000597325 AKAP3O75969 853 aa13.06□□□□□ -0.32
SHKBP1-213ENST00000597325 PRKCSHP14314 528 aaPredicted RBP13.06□□□□□ -0.32
SHKBP1-213ENST00000597325 FILIP1LQ4L180 1135 aa13.06□□□□□ -0.32
SHKBP1-213ENST00000597325 INTS8Q75QN2 995 aaKnown RBP13.06□□□□□ -0.32
SHKBP1-213ENST00000597325 THNSL1Q8IYQ7 743 aa13.06□□□□□ -0.32
SHKBP1-213ENST00000597325 HACE1Q8IYU2 909 aa13.06□□□□□ -0.32
SHKBP1-213ENST00000597325 RDH13Q8NBN7 331 aa13.06□□□□□ -0.32
SHKBP1-213ENST00000597325 CCDC94Q9BW85 323 aaPredicted RBP13.06□□□□□ -0.32
SHKBP1-213ENST00000597325 HSD3B7Q9H2F3 369 aa13.06□□□□□ -0.32
SHKBP1-213ENST00000597325 POMKQ9H5K3 350 aa13.06□□□□□ -0.32
SHKBP1-213ENST00000597325 AGO3Q9H9G7 860 aaKnown RBP13.06□□□□□ -0.32
SHKBP1-213ENST00000597325 RBAKQ9NYW8 714 aaPredicted RBP13.06□□□□□ -0.32
SHKBP1-213ENST00000597325 FLNBO75369 2602 aaKnown RBP13.06□□□□□ -0.32
SHKBP1-213ENST00000597325 DCDC2BA2VCK2 349 aa13.05□□□□□ -0.32
SHKBP1-213ENST00000597325 PES1O00541 588 aaKnown RBP13.05□□□□□ -0.32
SHKBP1-213ENST00000597325 ENPP3O14638 875 aa13.05□□□□□ -0.32
SHKBP1-213ENST00000597325 ABLIM1O14639 778 aa13.05□□□□□ -0.32
SHKBP1-213ENST00000597325 CBFA2T2O43439 604 aa13.05□□□□□ -0.32
SHKBP1-213ENST00000597325 TPM3P06753 285 aa13.05□□□□□ -0.32
SHKBP1-213ENST00000597325 ATP1A3P13637 1013 aa13.05□□□□□ -0.32
SHKBP1-213ENST00000597325 HOXA11P31270 313 aaPredicted RBP13.05□□□□□ -0.32
SHKBP1-213ENST00000597325 CASP4P49662 377 aa13.05□□□□□ -0.32
SHKBP1-213ENST00000597325 ACOT2P49753 483 aa13.05□□□□□ -0.32
SHKBP1-213ENST00000597325 RAB27AP51159 221 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms