RNA–Protein interactions for RNA: ENST00000597215.5

VRK3-213, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 836 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-213ENST00000597215 PNPLA4P41247 253 aa15.5■□□□□ 0.07
VRK3-213ENST00000597215 DLG4P78352 724 aa15.5■□□□□ 0.07
VRK3-213ENST00000597215 RBP5P82980 135 aa15.5■□□□□ 0.07
VRK3-213ENST00000597215 BMS1Q14692 1282 aaKnown RBP15.5■□□□□ 0.07
VRK3-213ENST00000597215 TRAPPC11Q7Z392 1133 aa15.5■□□□□ 0.07
VRK3-213ENST00000597215 VPS52Q8N1B4 723 aa15.5■□□□□ 0.07
VRK3-213ENST00000597215 TMEM130Q8N3G9 435 aa15.5■□□□□ 0.07
VRK3-213ENST00000597215 ENOX1Q8TC92 643 aaKnown RBP15.5■□□□□ 0.07
VRK3-213ENST00000597215 FAM84AQ96KN4 292 aa15.5■□□□□ 0.07
VRK3-213ENST00000597215 GAS2L1Q99501 681 aaPredicted RBP15.5■□□□□ 0.07
VRK3-213ENST00000597215 FUCA2Q9BTY2 467 aa15.5■□□□□ 0.07
VRK3-213ENST00000597215 HERC2P3Q9BVR0 1158 aa15.5■□□□□ 0.07
VRK3-213ENST00000597215 NAT10Q9H0A0 1025 aaKnown RBP15.5■□□□□ 0.07
VRK3-213ENST00000597215 THAP9Q9H5L6 903 aa15.5■□□□□ 0.07
VRK3-213ENST00000597215 TLR9Q9NR96 1032 aa15.5■□□□□ 0.07
VRK3-213ENST00000597215 SZT2Q5T011 3432 aa15.5■□□□□ 0.07
VRK3-213ENST00000597215 PPEF2O14830 753 aa15.49■□□□□ 0.07
VRK3-213ENST00000597215 STX10O60499 249 aa15.49■□□□□ 0.07
VRK3-213ENST00000597215 SOD2P04179 222 aa15.49■□□□□ 0.07
VRK3-213ENST00000597215 KRT19P08727 400 aa15.49■□□□□ 0.07
VRK3-213ENST00000597215 TRIM49P0CI25 452 aa15.49■□□□□ 0.07
VRK3-213ENST00000597215 TRIM49CP0CI26 452 aa15.49■□□□□ 0.07
VRK3-213ENST00000597215 GTF2H1P32780 548 aa15.49■□□□□ 0.07
VRK3-213ENST00000597215 TAF6P49848 677 aa15.49■□□□□ 0.07
VRK3-213ENST00000597215 MARSP56192 900 aaKnown RBP15.49■□□□□ 0.07
VRK3-213ENST00000597215 MCCD1P59942 119 aaPredicted RBP15.49■□□□□ 0.07
VRK3-213ENST00000597215 BIRC3Q13489 604 aa15.49■□□□□ 0.07
VRK3-213ENST00000597215 ANO6Q4KMQ2 910 aa15.49■□□□□ 0.07
VRK3-213ENST00000597215 DCAF17Q5H9S7 520 aaPredicted RBP15.49■□□□□ 0.07
VRK3-213ENST00000597215 C1orf220Q5T0J3 134 aa15.49■□□□□ 0.07
VRK3-213ENST00000597215 TCERG1LQ5VWI1 586 aa15.49■□□□□ 0.07
VRK3-213ENST00000597215 PDE12Q6L8Q7 609 aaKnown RBP15.49■□□□□ 0.07
VRK3-213ENST00000597215 CD300LGQ6UXG3 332 aa15.49■□□□□ 0.07
VRK3-213ENST00000597215 FAM114A1Q8IWE2 563 aa15.49■□□□□ 0.07
VRK3-213ENST00000597215 RNF168Q8IYW5 571 aaPredicted RBP15.49■□□□□ 0.07
VRK3-213ENST00000597215 LRRC52Q8N7C0 313 aa15.49■□□□□ 0.07
VRK3-213ENST00000597215 ZNF516Q92618 1163 aa15.49■□□□□ 0.07
VRK3-213ENST00000597215 MRPL38Q96DV4 380 aaKnown RBP15.49■□□□□ 0.07
VRK3-213ENST00000597215 CNOT6LQ96LI5 555 aaKnown RBP15.49■□□□□ 0.07
VRK3-213ENST00000597215 VN1R3Q9BXE9 311 aa15.49■□□□□ 0.07
VRK3-213ENST00000597215 GPR62Q9BZJ7 368 aa15.49■□□□□ 0.07
VRK3-213ENST00000597215 MTMR10Q9NXD2 777 aa15.49■□□□□ 0.07
VRK3-213ENST00000597215 LMCD1Q9NZU5 365 aa15.49■□□□□ 0.07
VRK3-213ENST00000597215 SIX4Q9UIU6 781 aa15.49■□□□□ 0.07
VRK3-213ENST00000597215 AGAP1Q9UPQ3 857 aa15.49■□□□□ 0.07
VRK3-213ENST00000597215 SCN1AP35498 2009 aa15.49■□□□□ 0.07
VRK3-213ENST00000597215 PHACTR2O75167 634 aa15.48■□□□□ 0.07
VRK3-213ENST00000597215 EFEMP2O95967 443 aa15.48■□□□□ 0.07
VRK3-213ENST00000597215 CTSAP10619 480 aa15.48■□□□□ 0.07
VRK3-213ENST00000597215 DNAJB1P25685 340 aa15.48■□□□□ 0.07
VRK3-213ENST00000597215 BRCC3P46736 316 aa15.48■□□□□ 0.07
VRK3-213ENST00000597215 AARSP49588 968 aaKnown RBP eCLIP15.48■□□□□ 0.07
VRK3-213ENST00000597215 LILRA4P59901 499 aa15.48■□□□□ 0.07
VRK3-213ENST00000597215 MYL5Q02045 173 aa15.48■□□□□ 0.07
VRK3-213ENST00000597215 USP41Q3LFD5 358 aa15.48■□□□□ 0.07
VRK3-213ENST00000597215 ZACNQ401N2 412 aa15.48■□□□□ 0.07
VRK3-213ENST00000597215 SV2CQ496J9 727 aa15.48■□□□□ 0.07
VRK3-213ENST00000597215 TDRD10Q5VZ19 366 aaKnown RBP15.48■□□□□ 0.07
VRK3-213ENST00000597215 TMC7Q7Z402 723 aa15.48■□□□□ 0.07
VRK3-213ENST00000597215 CXorf38Q8TB03 319 aa15.48■□□□□ 0.07
VRK3-213ENST00000597215 SUSD3Q96L08 255 aa15.48■□□□□ 0.07
VRK3-213ENST00000597215 TCF25Q9BQ70 676 aa15.48■□□□□ 0.07
VRK3-213ENST00000597215 ZBP1Q9H171 429 aa15.48■□□□□ 0.07
VRK3-213ENST00000597215 MMRN2Q9H8L6 949 aa15.48■□□□□ 0.07
VRK3-213ENST00000597215 ENTPD7Q9NQZ7 604 aa15.48■□□□□ 0.07
VRK3-213ENST00000597215 MAGEC2Q9UBF1 373 aaPredicted RBP15.48■□□□□ 0.07
VRK3-213ENST00000597215 NFE2L3Q9Y4A8 694 aa15.48■□□□□ 0.07
VRK3-213ENST00000597215 TRANK1O15050 2925 aa15.48■□□□□ 0.07
VRK3-213ENST00000597215 ATG2AQ2TAZ0 1938 aa15.47■□□□□ 0.07
VRK3-213ENST00000597215 ARHGEF37A1IGU5 675 aa15.47■□□□□ 0.07
VRK3-213ENST00000597215 FSCN2O14926 492 aa15.47■□□□□ 0.07
VRK3-213ENST00000597215 CSPG5O95196 566 aa15.47■□□□□ 0.07
VRK3-213ENST00000597215 C4BPAP04003 597 aaKnown RBP15.47■□□□□ 0.07
VRK3-213ENST00000597215 URODP06132 367 aa15.47■□□□□ 0.07
VRK3-213ENST00000597215 IGFBP4P22692 258 aa15.47■□□□□ 0.07
VRK3-213ENST00000597215 IGFBP6P24592 240 aaPredicted RBP15.47■□□□□ 0.07
VRK3-213ENST00000597215 GCLMP48507 274 aa15.47■□□□□ 0.07
VRK3-213ENST00000597215 GLUD2P49448 558 aa15.47■□□□□ 0.07
VRK3-213ENST00000597215 PPP3CAQ08209 521 aa15.47■□□□□ 0.07
VRK3-213ENST00000597215 MYO1EQ12965 1108 aa15.47■□□□□ 0.07
VRK3-213ENST00000597215 TRPC3Q13507 836 aa15.47■□□□□ 0.07
VRK3-213ENST00000597215 SMC1AQ14683 1233 aaKnown RBP15.47■□□□□ 0.07
VRK3-213ENST00000597215 TIGD5Q53EQ6 642 aa15.47■□□□□ 0.07
VRK3-213ENST00000597215 FAM171A1Q5VUB5 890 aa15.47■□□□□ 0.07
VRK3-213ENST00000597215 PLPP4Q5VZY2 271 aa15.47■□□□□ 0.07
VRK3-213ENST00000597215 KIAA1841Q6NSI8 718 aa15.47■□□□□ 0.07
VRK3-213ENST00000597215 DSTYKQ6XUX3 929 aa15.47■□□□□ 0.07
VRK3-213ENST00000597215 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.47■□□□□ 0.07
VRK3-213ENST00000597215 SV2AQ7L0J3 742 aa15.47■□□□□ 0.07
VRK3-213ENST00000597215 TRIM59Q8IWR1 403 aa15.47■□□□□ 0.07
VRK3-213ENST00000597215 MICAL1Q8TDZ2 1067 aa15.47■□□□□ 0.07
VRK3-213ENST00000597215 MYLIPQ8WY64 445 aa15.47■□□□□ 0.07
VRK3-213ENST00000597215 GUCD1Q96NT3 240 aa15.47■□□□□ 0.07
VRK3-213ENST00000597215 CDX2Q99626 313 aaPredicted RBP15.47■□□□□ 0.07
VRK3-213ENST00000597215 BPIFA3Q9BQP9 254 aa15.47■□□□□ 0.07
VRK3-213ENST00000597215 TTPALQ9BTX7 342 aa15.47■□□□□ 0.07
VRK3-213ENST00000597215 TMEM8AQ9HCN3 771 aa15.47■□□□□ 0.07
VRK3-213ENST00000597215 NGRNQ9NPE2 291 aaKnown RBP15.47■□□□□ 0.07
VRK3-213ENST00000597215 SSX2IPQ9Y2D8 614 aa15.47■□□□□ 0.07
VRK3-213ENST00000597215 I3L4J1 428 aa15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms