RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 FGF13Q92913 245 aa11.43□□□□□ -0.58
LIG1-213ENST00000596672 ACSF2Q96CM8 615 aaPredicted RBP11.43□□□□□ -0.58
LIG1-213ENST00000596672 TCEAL4Q96EI5 215 aa11.43□□□□□ -0.58
LIG1-213ENST00000596672 CALML4Q96GE6 196 aa11.43□□□□□ -0.58
LIG1-213ENST00000596672 INTS4Q96HW7 963 aaKnown RBP11.43□□□□□ -0.58
LIG1-213ENST00000596672 CHAMP1Q96JM3 812 aa11.43□□□□□ -0.58
LIG1-213ENST00000596672 TMEM209Q96SK2 561 aa11.43□□□□□ -0.58
LIG1-213ENST00000596672 PLA2G2FQ9BZM2 168 aa11.43□□□□□ -0.58
LIG1-213ENST00000596672 PARVGQ9HBI0 331 aa11.43□□□□□ -0.58
LIG1-213ENST00000596672 TOPORSQ9NS56 1045 aaPredicted RBP11.43□□□□□ -0.58
LIG1-213ENST00000596672 CPSF3Q9UKF6 684 aaKnown RBP11.43□□□□□ -0.58
LIG1-213ENST00000596672 STYXL1Q9Y6J8 313 aa11.43□□□□□ -0.58
LIG1-213ENST00000596672 NUMBLQ9Y6R0 609 aa11.43□□□□□ -0.58
LIG1-213ENST00000596672 ARHGEF37A1IGU5 675 aa11.42□□□□□ -0.58
LIG1-213ENST00000596672 K7ELQ4 463 aaPredicted RBP11.42□□□□□ -0.58
LIG1-213ENST00000596672 M0QZQ0 153 aa11.42□□□□□ -0.58
LIG1-213ENST00000596672 FAM13AO94988 1023 aa11.42□□□□□ -0.58
LIG1-213ENST00000596672 CFHP08603 1231 aa11.42□□□□□ -0.58
LIG1-213ENST00000596672 NFICP08651 508 aa11.42□□□□□ -0.58
LIG1-213ENST00000596672 HNRNPA1P09651 372 aaKnown RBP eCLIP11.42□□□□□ -0.58
LIG1-213ENST00000596672 FSHRP23945 695 aa11.42□□□□□ -0.58
LIG1-213ENST00000596672 RPL9P32969 192 aaKnown RBP11.42□□□□□ -0.58
LIG1-213ENST00000596672 ACOT2P49753 483 aa11.42□□□□□ -0.58
LIG1-213ENST00000596672 MRE11P49959 708 aa11.42□□□□□ -0.58
LIG1-213ENST00000596672 PPM1LQ5SGD2 360 aa11.42□□□□□ -0.58
LIG1-213ENST00000596672 JADE1Q6IE81 842 aa11.42□□□□□ -0.58
LIG1-213ENST00000596672 ANKS3Q6ZW76 656 aa11.42□□□□□ -0.58
LIG1-213ENST00000596672 SUGP1Q8IWZ8 645 aaKnown RBP11.42□□□□□ -0.58
LIG1-213ENST00000596672 NPAS3Q8IXF0 933 aa11.42□□□□□ -0.58
LIG1-213ENST00000596672 EFCAB13Q8IY85 973 aa11.42□□□□□ -0.58
LIG1-213ENST00000596672 HS6ST3Q8IZP7 471 aa11.42□□□□□ -0.58
LIG1-213ENST00000596672 GPR152Q8TDT2 470 aa11.42□□□□□ -0.58
LIG1-213ENST00000596672 ING5Q8WYH8 240 aa11.42□□□□□ -0.58
LIG1-213ENST00000596672 DDX12PQ92771 950 aa11.42□□□□□ -0.58
LIG1-213ENST00000596672 STAMQ92783 540 aa11.42□□□□□ -0.58
LIG1-213ENST00000596672 HPS3Q969F9 1004 aa11.42□□□□□ -0.58
LIG1-213ENST00000596672 BORCS6Q96GS4 357 aa11.42□□□□□ -0.58
LIG1-213ENST00000596672 RTP3Q9BQQ7 232 aa11.42□□□□□ -0.58
LIG1-213ENST00000596672 KCNH6Q9H252 994 aa11.42□□□□□ -0.58
LIG1-213ENST00000596672 ST6GALNAC4Q9H4F1 302 aa11.42□□□□□ -0.58
LIG1-213ENST00000596672 PIDD1Q9HB75 910 aa11.42□□□□□ -0.58
LIG1-213ENST00000596672 TBC1D7Q9P0N9 293 aa11.42□□□□□ -0.58
LIG1-213ENST00000596672 CEP72Q9P209 647 aa11.42□□□□□ -0.58
LIG1-213ENST00000596672 IGSF9Q9P2J2 1179 aa11.42□□□□□ -0.58
LIG1-213ENST00000596672 LARSQ9P2J5 1176 aaKnown RBP11.42□□□□□ -0.58
LIG1-213ENST00000596672 TFIP11Q9UBB9 837 aaKnown RBP11.42□□□□□ -0.58
LIG1-213ENST00000596672 FRMD3A2A2Y4 597 aa11.41□□□□□ -0.58
LIG1-213ENST00000596672 H0Y858 1186 aa11.41□□□□□ -0.58
LIG1-213ENST00000596672 SYN3O14994 580 aa11.41□□□□□ -0.58
LIG1-213ENST00000596672 OGTO15294 1046 aa11.41□□□□□ -0.58
LIG1-213ENST00000596672 STX6O43752 255 aa11.41□□□□□ -0.58
LIG1-213ENST00000596672 LRRN2O75325 713 aa11.41□□□□□ -0.58
LIG1-213ENST00000596672 BMP15O95972 392 aa11.41□□□□□ -0.58
LIG1-213ENST00000596672 POU2F2P09086 479 aa11.41□□□□□ -0.58
LIG1-213ENST00000596672 GLULP15104 373 aa11.41□□□□□ -0.58
LIG1-213ENST00000596672 CEBPBP17676 345 aa11.41□□□□□ -0.58
LIG1-213ENST00000596672 HOXA9P31269 272 aa11.41□□□□□ -0.58
LIG1-213ENST00000596672 HOXD13P35453 343 aa11.41□□□□□ -0.58
LIG1-213ENST00000596672 NASPP49321 788 aaPredicted RBP11.41□□□□□ -0.58
LIG1-213ENST00000596672 LIG4P49917 911 aa11.41□□□□□ -0.58
LIG1-213ENST00000596672 ARPP19P56211 112 aa11.41□□□□□ -0.58
LIG1-213ENST00000596672 GPC5P78333 572 aa11.41□□□□□ -0.58
LIG1-213ENST00000596672 CREMQ03060 361 aa11.41□□□□□ -0.58
LIG1-213ENST00000596672 E2F4Q16254 413 aa11.41□□□□□ -0.58
LIG1-213ENST00000596672 PRSS36Q5K4E3 855 aa11.41□□□□□ -0.58
LIG1-213ENST00000596672 FOXD4L5Q5VV16 416 aaPredicted RBP11.41□□□□□ -0.58
LIG1-213ENST00000596672 SPATA1Q5VX52 437 aa11.41□□□□□ -0.58
LIG1-213ENST00000596672 ASTLQ6HA08 431 aaPredicted RBP11.41□□□□□ -0.58
LIG1-213ENST00000596672 RNF19BQ6ZMZ0 732 aa11.41□□□□□ -0.58
LIG1-213ENST00000596672 SIX5Q8N196 739 aa11.41□□□□□ -0.58
LIG1-213ENST00000596672 TTC9BQ8N6N2 239 aa11.41□□□□□ -0.58
LIG1-213ENST00000596672 LINC00301Q8NCQ3 95 aa11.41□□□□□ -0.58
LIG1-213ENST00000596672 ZNF461Q8TAF7 563 aa11.41□□□□□ -0.58
LIG1-213ENST00000596672 CXorf38Q8TB03 319 aa11.41□□□□□ -0.58
LIG1-213ENST00000596672 FOXD4L4Q8WXT5 416 aaPredicted RBP11.41□□□□□ -0.58
LIG1-213ENST00000596672 KIF12Q96FN5 646 aa11.41□□□□□ -0.58
LIG1-213ENST00000596672 ZSWIM3Q96MP5 696 aa11.41□□□□□ -0.58
LIG1-213ENST00000596672 LRRC3Q9BY71 257 aa11.41□□□□□ -0.58
LIG1-213ENST00000596672 ZHX3Q9H4I2 956 aa11.41□□□□□ -0.58
LIG1-213ENST00000596672 PLEKHA5Q9HAU0 1116 aa11.41□□□□□ -0.58
LIG1-213ENST00000596672 SLC38A7Q9NVC3 462 aa11.41□□□□□ -0.58
LIG1-213ENST00000596672 CDH7Q9ULB5 785 aa11.41□□□□□ -0.58
LIG1-213ENST00000596672 PCDHB8Q9UN66 801 aa11.41□□□□□ -0.58
LIG1-213ENST00000596672 POLIQ9UNA4 740 aa11.41□□□□□ -0.58
LIG1-213ENST00000596672 MORC2Q9Y6X9 1032 aaPredicted RBP11.41□□□□□ -0.58
LIG1-213ENST00000596672 TCHHQ07283 1943 aa11.41□□□□□ -0.58
LIG1-213ENST00000596672 COL4A2P08572 1712 aa11.4□□□□□ -0.58
LIG1-213ENST00000596672 ANO9A1A5B4 782 aa11.4□□□□□ -0.58
LIG1-213ENST00000596672 PIRO00625 290 aa11.4□□□□□ -0.58
LIG1-213ENST00000596672 HNRNPDLO14979 420 aaKnown RBP11.4□□□□□ -0.58
LIG1-213ENST00000596672 GALR2O43603 387 aaPredicted RBP11.4□□□□□ -0.58
LIG1-213ENST00000596672 OAZ2O95190 189 aa11.4□□□□□ -0.58
LIG1-213ENST00000596672 RHOP08100 348 aa11.4□□□□□ -0.58
LIG1-213ENST00000596672 ATF2P15336 505 aa11.4□□□□□ -0.58
LIG1-213ENST00000596672 PDCP20941 246 aa11.4□□□□□ -0.58
LIG1-213ENST00000596672 FCARP24071 287 aa11.4□□□□□ -0.58
LIG1-213ENST00000596672 UVSSAQ2YD98 709 aa11.4□□□□□ -0.58
LIG1-213ENST00000596672 CTXN3Q4LDR2 81 aa11.4□□□□□ -0.58
LIG1-213ENST00000596672 LIN9Q5TKA1 542 aa11.4□□□□□ -0.58
LIG1-213ENST00000596672 SHC4Q6S5L8 630 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms