RNA–Protein interactions for RNA: ENST00000593223.1

SMAD4-216, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-216ENST00000593223 ATAT1Q5SQI0 421 aa6.22□□□□□ -1.41
SMAD4-216ENST00000593223 CXorf57Q6NSI4 855 aaKnown RBP6.22□□□□□ -1.41
SMAD4-216ENST00000593223 TUBA3EQ6PEY2 450 aa6.22□□□□□ -1.41
SMAD4-216ENST00000593223 SLC4A10Q6U841 1118 aa6.22□□□□□ -1.41
SMAD4-216ENST00000593223 HEATR3Q7Z4Q2 680 aa6.22□□□□□ -1.41
SMAD4-216ENST00000593223 SH2D3CQ8N5H7 860 aa6.22□□□□□ -1.41
SMAD4-216ENST00000593223 AOPEPQ8N6M6 819 aa6.22□□□□□ -1.41
SMAD4-216ENST00000593223 TBC1D15Q8TC07 691 aa6.22□□□□□ -1.41
SMAD4-216ENST00000593223 CACTINQ8WUQ7 758 aaKnown RBP6.22□□□□□ -1.41
SMAD4-216ENST00000593223 SLC25A43Q8WUT9 341 aaPredicted RBP6.22□□□□□ -1.41
SMAD4-216ENST00000593223 C1GALT1C1Q96EU7 318 aa6.22□□□□□ -1.41
SMAD4-216ENST00000593223 ZNF503Q96F45 646 aa6.22□□□□□ -1.41
SMAD4-216ENST00000593223 FEZ2Q9UHY8 353 aaPredicted RBP6.22□□□□□ -1.41
SMAD4-216ENST00000593223 DNMBPQ6XZF7 1577 aa6.22□□□□□ -1.41
SMAD4-216ENST00000593223 ADCY10Q96PN6 1610 aa6.21□□□□□ -1.41
SMAD4-216ENST00000593223 RNASET2O00584 256 aaKnown RBP6.21□□□□□ -1.42
SMAD4-216ENST00000593223 ZNF185O15231 689 aa6.21□□□□□ -1.42
SMAD4-216ENST00000593223 MATN3O15232 486 aa6.21□□□□□ -1.42
SMAD4-216ENST00000593223 TSPAN6O43657 245 aa6.21□□□□□ -1.42
SMAD4-216ENST00000593223 MAP2K6P52564 334 aa6.21□□□□□ -1.42
SMAD4-216ENST00000593223 SLC25A3Q00325 362 aa6.21□□□□□ -1.42
SMAD4-216ENST00000593223 PDCD4Q53EL6 469 aaKnown RBP6.21□□□□□ -1.42
SMAD4-216ENST00000593223 MIIPQ5JXC2 388 aa6.21□□□□□ -1.42
SMAD4-216ENST00000593223 FAM102BQ5T8I3 360 aa6.21□□□□□ -1.42
SMAD4-216ENST00000593223 FAM102AQ5T9C2 384 aaPredicted RBP6.21□□□□□ -1.42
SMAD4-216ENST00000593223 SYNE4Q8N205 404 aa6.21□□□□□ -1.42
SMAD4-216ENST00000593223 IL17RDQ8NFM7 739 aa6.21□□□□□ -1.42
SMAD4-216ENST00000593223 ZNF747Q9BV97 191 aa6.21□□□□□ -1.42
SMAD4-216ENST00000593223 SLC46A2Q9BY10 475 aa6.21□□□□□ -1.42
SMAD4-216ENST00000593223 SLC12A5Q9H2X9 1139 aa6.21□□□□□ -1.42
SMAD4-216ENST00000593223 ZNF768Q9H5H4 540 aaKnown RBP6.21□□□□□ -1.42
SMAD4-216ENST00000593223 SLAMF7Q9NQ25 335 aa6.21□□□□□ -1.42
SMAD4-216ENST00000593223 LMBRD1Q9NUN5 540 aa6.21□□□□□ -1.42
SMAD4-216ENST00000593223 GNL3LQ9NVN8 582 aaKnown RBP6.21□□□□□ -1.42
SMAD4-216ENST00000593223 FAM30AQ9NZY2 134 aa6.21□□□□□ -1.42
SMAD4-216ENST00000593223 ABCF2Q9UG63 623 aa6.21□□□□□ -1.42
SMAD4-216ENST00000593223 PRG4Q92954 1404 aaPredicted RBP6.21□□□□□ -1.42
SMAD4-216ENST00000593223 AHRRA9YTQ3 701 aa6.2□□□□□ -1.42
SMAD4-216ENST00000593223 H3BUI4 141 aa6.2□□□□□ -1.42
SMAD4-216ENST00000593223 GNAI3P08754 354 aa6.2□□□□□ -1.42
SMAD4-216ENST00000593223 CKBP12277 381 aa6.2□□□□□ -1.42
SMAD4-216ENST00000593223 LPOP22079 712 aaPredicted RBP6.2□□□□□ -1.42
SMAD4-216ENST00000593223 HK3P52790 923 aa6.2□□□□□ -1.42
SMAD4-216ENST00000593223 GNAI1P63096 354 aa6.2□□□□□ -1.42
SMAD4-216ENST00000593223 MXRA7P84157 204 aa6.2□□□□□ -1.42
SMAD4-216ENST00000593223 MLC1Q15049 377 aa6.2□□□□□ -1.42
SMAD4-216ENST00000593223 MINDY4Q4G0A6 757 aa6.2□□□□□ -1.42
SMAD4-216ENST00000593223 FLYWCH1Q4VC44 716 aa6.2□□□□□ -1.42
SMAD4-216ENST00000593223 UTP14CQ5TAP6 766 aaKnown RBP6.2□□□□□ -1.42
SMAD4-216ENST00000593223 AGAP9Q5VTM2 703 aa6.2□□□□□ -1.42
SMAD4-216ENST00000593223 EPM2AIP1Q7L775 607 aaPredicted RBP6.2□□□□□ -1.42
SMAD4-216ENST00000593223 GGNQ86UU5 652 aa6.2□□□□□ -1.42
SMAD4-216ENST00000593223 FMNL3Q8IVF7 1028 aa6.2□□□□□ -1.42
SMAD4-216ENST00000593223 WDR75Q8IWA0 830 aaKnown RBP6.2□□□□□ -1.42
SMAD4-216ENST00000593223 RHOT2Q8IXI1 618 aa6.2□□□□□ -1.42
SMAD4-216ENST00000593223 MYO1HQ8N1T3 1032 aa6.2□□□□□ -1.42
SMAD4-216ENST00000593223 OR56A1Q8NGH5 318 aa6.2□□□□□ -1.42
SMAD4-216ENST00000593223 SLC35G2Q8TBE7 412 aa6.2□□□□□ -1.42
SMAD4-216ENST00000593223 DIS3LQ8TF46 1054 aaKnown RBP6.2□□□□□ -1.42
SMAD4-216ENST00000593223 TSR2Q969E8 191 aaKnown RBP6.2□□□□□ -1.42
SMAD4-216ENST00000593223 NEU1Q99519 415 aa6.2□□□□□ -1.42
SMAD4-216ENST00000593223 RNPEPQ9H4A4 650 aa6.2□□□□□ -1.42
SMAD4-216ENST00000593223 NRDE2Q9H7Z3 1164 aa6.2□□□□□ -1.42
SMAD4-216ENST00000593223 ANLNQ9NQW6 1124 aa6.2□□□□□ -1.42
SMAD4-216ENST00000593223 SLC2A4RGQ9NR83 387 aa6.2□□□□□ -1.42
SMAD4-216ENST00000593223 NR2E3Q9Y5X4 410 aa6.2□□□□□ -1.42
SMAD4-216ENST00000593223 KIF21BO75037 1637 aa6.2□□□□□ -1.42
SMAD4-216ENST00000593223 SHROOM2Q13796 1616 aa6.2□□□□□ -1.42
SMAD4-216ENST00000593223 ADAMTSL3P82987 1691 aa6.2□□□□□ -1.42
SMAD4-216ENST00000593223 GOLGA6CA6NDK9 693 aa6.19□□□□□ -1.42
SMAD4-216ENST00000593223 GOLGA6BA6NDN3 693 aa6.19□□□□□ -1.42
SMAD4-216ENST00000593223 NPIPB8E9PQR5 432 aa6.19□□□□□ -1.42
SMAD4-216ENST00000593223 F2RL2O00254 374 aa6.19□□□□□ -1.42
SMAD4-216ENST00000593223 PRPF3O43395 683 aaKnown RBP6.19□□□□□ -1.42
SMAD4-216ENST00000593223 NCR1O76036 304 aa6.19□□□□□ -1.42
SMAD4-216ENST00000593223 AGFG2O95081 481 aa6.19□□□□□ -1.42
SMAD4-216ENST00000593223 PEX11BO96011 259 aa6.19□□□□□ -1.42
SMAD4-216ENST00000593223 ALDH2P05091 517 aa6.19□□□□□ -1.42
SMAD4-216ENST00000593223 HLA-DOAP06340 250 aa6.19□□□□□ -1.42
SMAD4-216ENST00000593223 GOLGA6DP0CG33 693 aa6.19□□□□□ -1.42
SMAD4-216ENST00000593223 TNFRSF1AP19438 455 aa6.19□□□□□ -1.42
SMAD4-216ENST00000593223 HSPA1LP34931 641 aa6.19□□□□□ -1.42
SMAD4-216ENST00000593223 PTGS2P35354 604 aa6.19□□□□□ -1.42
SMAD4-216ENST00000593223 FAM189BP81408 668 aa6.19□□□□□ -1.42
SMAD4-216ENST00000593223 FOXR2Q6PJQ5 311 aa6.19□□□□□ -1.42
SMAD4-216ENST00000593223 DENND1CQ8IV53 801 aa6.19□□□□□ -1.42
SMAD4-216ENST00000593223 HAS1Q92839 578 aa6.19□□□□□ -1.42
SMAD4-216ENST00000593223 MTFMTQ96DP5 389 aaKnown RBP6.19□□□□□ -1.42
SMAD4-216ENST00000593223 CDK5RAP3Q96JB5 506 aa6.19□□□□□ -1.42
SMAD4-216ENST00000593223 CGRRF1Q99675 332 aa6.19□□□□□ -1.42
SMAD4-216ENST00000593223 ZSWIM1Q9BR11 485 aa6.19□□□□□ -1.42
SMAD4-216ENST00000593223 TEX101Q9BY14 249 aa6.19□□□□□ -1.42
SMAD4-216ENST00000593223 WDCPQ9H6R7 721 aa6.19□□□□□ -1.42
SMAD4-216ENST00000593223 AKIP1Q9NQ31 210 aa6.19□□□□□ -1.42
SMAD4-216ENST00000593223 GOLGA6AQ9NYA3 693 aa6.19□□□□□ -1.42
SMAD4-216ENST00000593223 JKAMPQ9P055 326 aa6.19□□□□□ -1.42
SMAD4-216ENST00000593223 RGS17Q9UGC6 210 aaPredicted RBP6.19□□□□□ -1.42
SMAD4-216ENST00000593223 CHST2Q9Y4C5 530 aa6.19□□□□□ -1.42
SMAD4-216ENST00000593223 FPGT-TNNI3KV9GXZ4 949 aa6.19□□□□□ -1.42
SMAD4-216ENST00000593223 WIZO95785 1651 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms