RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	B4GALT4	O60513	344 aa		16.51	■□□□□ 0.23
DDX39A-209	ENST00000589318	ADAMTS4	O75173	837 aa		16.51	■□□□□ 0.23
DDX39A-209	ENST00000589318	CXCL8	P10145	99 aa		16.51	■□□□□ 0.23
DDX39A-209	ENST00000589318	OSTN	P61366	133 aa		16.51	■□□□□ 0.23
DDX39A-209	ENST00000589318	GNAS	Q5JWF2	1037 aa		16.51	■□□□□ 0.23
DDX39A-209	ENST00000589318	C10orf76	Q5T2E6	689 aa		16.51	■□□□□ 0.23
DDX39A-209	ENST00000589318	SPOPL	Q6IQ16	392 aa		16.51	■□□□□ 0.23
DDX39A-209	ENST00000589318	DNAAF5	Q86Y56	855 aa		16.51	■□□□□ 0.23
DDX39A-209	ENST00000589318	EPS8L1	Q8TE68	723 aa		16.51	■□□□□ 0.23
DDX39A-209	ENST00000589318	SLC20A1	Q8WUM9	679 aa		16.51	■□□□□ 0.23
DDX39A-209	ENST00000589318	DNAJB3	Q8WWF6	145 aa		16.51	■□□□□ 0.23
DDX39A-209	ENST00000589318	DHX38	Q92620	1227 aa	Known RBP	16.51	■□□□□ 0.23
DDX39A-209	ENST00000589318	RUBCN	Q92622	972 aa		16.51	■□□□□ 0.23
DDX39A-209	ENST00000589318	SCLT1	Q96NL6	688 aa		16.51	■□□□□ 0.23
DDX39A-209	ENST00000589318	MTMR12	Q9C0I1	747 aa		16.51	■□□□□ 0.23
DDX39A-209	ENST00000589318	KPNA6	O60684	536 aa		16.5	■□□□□ 0.23
DDX39A-209	ENST00000589318	SGPL1	O95470	568 aa		16.5	■□□□□ 0.23
DDX39A-209	ENST00000589318	CST3	P01034	146 aa	Predicted RBP	16.5	■□□□□ 0.23
DDX39A-209	ENST00000589318	CCND3	P30281	292 aa	Predicted RBP	16.5	■□□□□ 0.23
DDX39A-209	ENST00000589318	HOXA11	P31270	313 aa	Predicted RBP	16.5	■□□□□ 0.23
DDX39A-209	ENST00000589318	AP3M2	P53677	418 aa		16.5	■□□□□ 0.23
DDX39A-209	ENST00000589318	CDC42EP1	Q00587	391 aa		16.5	■□□□□ 0.23
DDX39A-209	ENST00000589318	SURF1	Q15526	300 aa		16.5	■□□□□ 0.23
DDX39A-209	ENST00000589318	VPS36	Q86VN1	386 aa		16.5	■□□□□ 0.23
DDX39A-209	ENST00000589318	PALB2	Q86YC2	1186 aa		16.5	■□□□□ 0.23
DDX39A-209	ENST00000589318	ZNF784	Q8NCA9	323 aa	Predicted RBP	16.5	■□□□□ 0.23
DDX39A-209	ENST00000589318	GIMAP7	Q8NHV1	300 aa		16.5	■□□□□ 0.23
DDX39A-209	ENST00000589318	CD99L2	Q8TCZ2	262 aa		16.5	■□□□□ 0.23
DDX39A-209	ENST00000589318	FAM212A	Q96EL1	285 aa		16.5	■□□□□ 0.23
DDX39A-209	ENST00000589318	C1orf112	Q9NSG2	853 aa		16.5	■□□□□ 0.23
DDX39A-209	ENST00000589318	SRRD	Q9UH36	339 aa		16.5	■□□□□ 0.23
DDX39A-209	ENST00000589318	NOCT	Q9UK39	431 aa	Known RBP	16.5	■□□□□ 0.23
DDX39A-209	ENST00000589318	HPCAL4	Q9UM19	191 aa		16.5	■□□□□ 0.23
DDX39A-209	ENST00000589318	TRIP11	Q15643	1979 aa		16.5	■□□□□ 0.23
DDX39A-209	ENST00000589318	C17orf102	A2RUQ5	167 aa		16.49	■□□□□ 0.23
DDX39A-209	ENST00000589318	CYP26A1	O43174	497 aa		16.49	■□□□□ 0.23
DDX39A-209	ENST00000589318	MOCS3	O95396	460 aa		16.49	■□□□□ 0.23
DDX39A-209	ENST00000589318	MYCN	P04198	464 aa	Predicted RBP	16.49	■□□□□ 0.23
DDX39A-209	ENST00000589318	STAG3L1	P0CL83	205 aa		16.49	■□□□□ 0.23
DDX39A-209	ENST00000589318	PRKAR2A	P13861	404 aa	Known RBP	16.49	■□□□□ 0.23
DDX39A-209	ENST00000589318	VEGFB	P49765	207 aa		16.49	■□□□□ 0.23
DDX39A-209	ENST00000589318	AMPD2	Q01433	879 aa		16.49	■□□□□ 0.23
DDX39A-209	ENST00000589318	NCOA4	Q13772	614 aa		16.49	■□□□□ 0.23
DDX39A-209	ENST00000589318	ENOSF1	Q7L5Y1	443 aa		16.49	■□□□□ 0.23
DDX39A-209	ENST00000589318	TRAPPC11	Q7Z392	1133 aa		16.49	■□□□□ 0.23
DDX39A-209	ENST00000589318	COG1	Q8WTW3	980 aa		16.49	■□□□□ 0.23
DDX39A-209	ENST00000589318	OSMR	Q99650	979 aa		16.49	■□□□□ 0.23
DDX39A-209	ENST00000589318	MTG1	Q9BT17	334 aa	Predicted RBP	16.49	■□□□□ 0.23
DDX39A-209	ENST00000589318	GCOM2	Q9BZD3	368 aa	Predicted RBP	16.49	■□□□□ 0.23
DDX39A-209	ENST00000589318	ACP6	Q9NPH0	428 aa		16.49	■□□□□ 0.23
DDX39A-209	ENST00000589318	LUC7L	Q9NQ29	371 aa	Known RBP	16.49	■□□□□ 0.23
DDX39A-209	ENST00000589318	UMODL1	Q5DID0	1318 aa		16.49	■□□□□ 0.23
DDX39A-209	ENST00000589318	BRCA2	P51587	3418 aa		16.49	■□□□□ 0.23
DDX39A-209	ENST00000589318	BTNL10	A8MVZ5	291 aa		16.49	■□□□□ 0.23
DDX39A-209	ENST00000589318	CLTA	P09496	248 aa		16.49	■□□□□ 0.23
DDX39A-209	ENST00000589318	RARB	P10826	455 aa		16.49	■□□□□ 0.23
DDX39A-209	ENST00000589318	DARS	P14868	501 aa	Known RBP	16.49	■□□□□ 0.23
DDX39A-209	ENST00000589318	CHRNB2	P17787	502 aa		16.49	■□□□□ 0.23
DDX39A-209	ENST00000589318	POU5F1	Q01860	360 aa	Known RBP	16.49	■□□□□ 0.23
DDX39A-209	ENST00000589318	DUOXA2	Q1HG44	320 aa		16.49	■□□□□ 0.23
DDX39A-209	ENST00000589318	WDR44	Q5JSH3	913 aa		16.49	■□□□□ 0.23
DDX39A-209	ENST00000589318	CXCL17	Q6UXB2	119 aa		16.49	■□□□□ 0.23
DDX39A-209	ENST00000589318	NOP9	Q86U38	636 aa	Known RBP	16.49	■□□□□ 0.23
DDX39A-209	ENST00000589318	C7orf31	Q8N865	590 aa		16.49	■□□□□ 0.23
DDX39A-209	ENST00000589318	U2AF1L4	Q8WU68	220 aa	Known RBP	16.49	■□□□□ 0.23
DDX39A-209	ENST00000589318	TMEM40	Q8WWA1	233 aa		16.49	■□□□□ 0.23
DDX39A-209	ENST00000589318	AGPAT1	Q99943	283 aa		16.49	■□□□□ 0.23
DDX39A-209	ENST00000589318	RPF1	Q9H9Y2	349 aa	Known RBP	16.49	■□□□□ 0.23
DDX39A-209	ENST00000589318	GINS2	Q9Y248	185 aa		16.49	■□□□□ 0.23
DDX39A-209	ENST00000589318	NUB1	Q9Y5A7	615 aa		16.49	■□□□□ 0.23
DDX39A-209	ENST00000589318	RALGAPA2	Q2PPJ7	1873 aa		16.48	■□□□□ 0.23
DDX39A-209	ENST00000589318	IL18RAP	O95256	599 aa		16.48	■□□□□ 0.23
DDX39A-209	ENST00000589318	ASS1	P00966	412 aa	Known RBP	16.48	■□□□□ 0.23
DDX39A-209	ENST00000589318	RHOXF2B	P0C7M4	288 aa		16.48	■□□□□ 0.23
DDX39A-209	ENST00000589318	ACO1	P21399	889 aa	Known RBP	16.48	■□□□□ 0.23
DDX39A-209	ENST00000589318	NOP14	P78316	857 aa	Known RBP	16.48	■□□□□ 0.23
DDX39A-209	ENST00000589318	MAP3K21	Q5TCX8	1036 aa		16.48	■□□□□ 0.23
DDX39A-209	ENST00000589318	MICALCL	Q6ZW33	695 aa		16.48	■□□□□ 0.23
DDX39A-209	ENST00000589318	SLC47A2	Q86VL8	602 aa		16.48	■□□□□ 0.23
DDX39A-209	ENST00000589318	RNF10	Q8N5U6	811 aa	Known RBP	16.48	■□□□□ 0.23
DDX39A-209	ENST00000589318	FAM81B	Q96LP2	452 aa		16.48	■□□□□ 0.23
DDX39A-209	ENST00000589318	RHOXF2	Q9BQY4	288 aa		16.48	■□□□□ 0.23
DDX39A-209	ENST00000589318	ENC1	O14682	589 aa		16.47	■□□□□ 0.23
DDX39A-209	ENST00000589318	CHUK	O15111	745 aa		16.47	■□□□□ 0.23
DDX39A-209	ENST00000589318	PHACTR2	O75167	634 aa		16.47	■□□□□ 0.23
DDX39A-209	ENST00000589318	FSBP	O95073	299 aa		16.47	■□□□□ 0.23
DDX39A-209	ENST00000589318	ATP1A1	P05023	1023 aa	Known RBP	16.47	■□□□□ 0.23
DDX39A-209	ENST00000589318	RDX	P35241	583 aa	Known RBP	16.47	■□□□□ 0.23
DDX39A-209	ENST00000589318	LIG3	P49916	1009 aa		16.47	■□□□□ 0.23
DDX39A-209	ENST00000589318	IRAK1	P51617	712 aa		16.47	■□□□□ 0.23
DDX39A-209	ENST00000589318	NBPF20	Q3BBV1	942 aa		16.47	■□□□□ 0.23
DDX39A-209	ENST00000589318	SLC10A6	Q3KNW5	377 aa		16.47	■□□□□ 0.23
DDX39A-209	ENST00000589318	CCSAP	Q6IQ19	270 aa	Predicted RBP	16.47	■□□□□ 0.23
DDX39A-209	ENST00000589318	YTHDF3	Q7Z739	585 aa	Known RBP	16.47	■□□□□ 0.23
DDX39A-209	ENST00000589318	KLHDC9	Q8NEP7	349 aa		16.47	■□□□□ 0.23
DDX39A-209	ENST00000589318	TRIM58	Q8NG06	486 aa		16.47	■□□□□ 0.23
DDX39A-209	ENST00000589318	DDX1	Q92499	740 aa	Known RBP	16.47	■□□□□ 0.23
DDX39A-209	ENST00000589318	XPNPEP3	Q9NQH7	507 aa		16.47	■□□□□ 0.23
DDX39A-209	ENST00000589318	TAS2R14	Q9NYV8	317 aa		16.47	■□□□□ 0.23
DDX39A-209	ENST00000589318	GTF2IRD1	Q9UHL9	959 aa		16.47	■□□□□ 0.23

Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms