RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	MRGPRX1	Q96LB2	322 aa		5.7	□□□□□ -1.5
SS18-223	ENST00000583595	TEPSIN	Q96N21	525 aa		5.7	□□□□□ -1.5
SS18-223	ENST00000583595	SYT3	Q9BQG1	590 aa		5.7	□□□□□ -1.5
SS18-223	ENST00000583595	GORASP1	Q9BQQ3	440 aa		5.7	□□□□□ -1.5
SS18-223	ENST00000583595	SOX7	Q9BT81	388 aa		5.7	□□□□□ -1.5
SS18-223	ENST00000583595	STK33	Q9BYT3	514 aa		5.7	□□□□□ -1.5
SS18-223	ENST00000583595	PITHD1	Q9GZP4	211 aa	Predicted RBP	5.7	□□□□□ -1.5
SS18-223	ENST00000583595	BLOC1S4	Q9NUP1	217 aa		5.7	□□□□□ -1.5
SS18-223	ENST00000583595	MYO1A	Q9UBC5	1043 aa		5.7	□□□□□ -1.5
SS18-223	ENST00000583595	SIK3	Q9Y2K2	1263 aa		5.7	□□□□□ -1.5
SS18-223	ENST00000583595	AQP12B	A6NM10	295 aa		5.69	□□□□□ -1.5
SS18-223	ENST00000583595	IPO5	O00410	1097 aa	Known RBP	5.69	□□□□□ -1.5
SS18-223	ENST00000583595	TRIM38	O00635	465 aa		5.69	□□□□□ -1.5
SS18-223	ENST00000583595	LRG1	P02750	347 aa		5.69	□□□□□ -1.5
SS18-223	ENST00000583595	MAL	P21145	153 aa		5.69	□□□□□ -1.5
SS18-223	ENST00000583595	SERPINF1	P36955	418 aa		5.69	□□□□□ -1.5
SS18-223	ENST00000583595	GPR15	P49685	360 aa		5.69	□□□□□ -1.5
SS18-223	ENST00000583595	ANTXR2	P58335	489 aa		5.69	□□□□□ -1.5
SS18-223	ENST00000583595	CD69	Q07108	199 aa		5.69	□□□□□ -1.5
SS18-223	ENST00000583595	TIGD6	Q17RP2	521 aa		5.69	□□□□□ -1.5
SS18-223	ENST00000583595	GPATCH4	Q5T3I0	446 aa	Known RBP	5.69	□□□□□ -1.5
SS18-223	ENST00000583595	NT5DC1	Q5TFE4	455 aa		5.69	□□□□□ -1.5
SS18-223	ENST00000583595	CD276	Q5ZPR3	534 aa		5.69	□□□□□ -1.5
SS18-223	ENST00000583595	FAAH2	Q6GMR7	532 aa		5.69	□□□□□ -1.5
SS18-223	ENST00000583595	ABHD15	Q6UXT9	468 aa		5.69	□□□□□ -1.5
SS18-223	ENST00000583595		Q6ZVL8	140 aa		5.69	□□□□□ -1.5
SS18-223	ENST00000583595	PPP1R3B	Q86XI6	285 aa		5.69	□□□□□ -1.5
SS18-223	ENST00000583595	GALNT15	Q8N3T1	639 aa		5.69	□□□□□ -1.5
SS18-223	ENST00000583595	ESX1	Q8N693	406 aa		5.69	□□□□□ -1.5
SS18-223	ENST00000583595	LINC00482	Q8N8I6	264 aa		5.69	□□□□□ -1.5
SS18-223	ENST00000583595	SLC30A5	Q8TAD4	765 aa		5.69	□□□□□ -1.5
SS18-223	ENST00000583595	CALML6	Q8TD86	181 aa		5.69	□□□□□ -1.5
SS18-223	ENST00000583595	MSLNL	Q96KJ4	702 aa		5.69	□□□□□ -1.5
SS18-223	ENST00000583595	SAMD11	Q96NU1	681 aa		5.69	□□□□□ -1.5
SS18-223	ENST00000583595	P2RX7	Q99572	595 aa	Known RBP	5.69	□□□□□ -1.5
SS18-223	ENST00000583595	CENPO	Q9BU64	300 aa		5.69	□□□□□ -1.5
SS18-223	ENST00000583595	BRIP1	Q9BX63	1249 aa		5.69	□□□□□ -1.5
SS18-223	ENST00000583595	PCDH18	Q9HCL0	1135 aa		5.69	□□□□□ -1.5
SS18-223	ENST00000583595	SARS2	Q9NP81	518 aa	Known RBP	5.69	□□□□□ -1.5
SS18-223	ENST00000583595	INCENP	Q9NQS7	918 aa		5.69	□□□□□ -1.5
SS18-223	ENST00000583595	USP40	Q9NVE5	1235 aa		5.69	□□□□□ -1.5
SS18-223	ENST00000583595	FAM171A2	A8MVW0	826 aa		5.68	□□□□□ -1.5
SS18-223	ENST00000583595	ACKR2	O00590	384 aa		5.68	□□□□□ -1.5
SS18-223	ENST00000583595	SGTA	O43765	313 aa		5.68	□□□□□ -1.5
SS18-223	ENST00000583595	ATP1A3	P13637	1013 aa		5.68	□□□□□ -1.5
SS18-223	ENST00000583595	HDC	P19113	662 aa		5.68	□□□□□ -1.5
SS18-223	ENST00000583595	CTSS	P25774	331 aa		5.68	□□□□□ -1.5
SS18-223	ENST00000583595	STAT5A	P42229	794 aa		5.68	□□□□□ -1.5
SS18-223	ENST00000583595	FLT3LG	P49771	235 aa		5.68	□□□□□ -1.5
SS18-223	ENST00000583595	RPS16	P62249	146 aa	Known RBP	5.68	□□□□□ -1.5
SS18-223	ENST00000583595	CDC42EP1	Q00587	391 aa		5.68	□□□□□ -1.5
SS18-223	ENST00000583595	PFKP	Q01813	784 aa		5.68	□□□□□ -1.5
SS18-223	ENST00000583595	SPARCL1	Q14515	664 aa		5.68	□□□□□ -1.5
SS18-223	ENST00000583595	FLYWCH1	Q4VC44	716 aa		5.68	□□□□□ -1.5
SS18-223	ENST00000583595	RRAGB	Q5VZM2	374 aa		5.68	□□□□□ -1.5
SS18-223	ENST00000583595	RFX8	Q6ZV50	586 aa		5.68	□□□□□ -1.5
SS18-223	ENST00000583595	RSPH3	Q86UC2	560 aa		5.68	□□□□□ -1.5
SS18-223	ENST00000583595	STK32C	Q86UX6	486 aa		5.68	□□□□□ -1.5
SS18-223	ENST00000583595	ZC3H18	Q86VM9	953 aa	Known RBP	5.68	□□□□□ -1.5
SS18-223	ENST00000583595	TMTC1	Q8IUR5	882 aa		5.68	□□□□□ -1.5
SS18-223	ENST00000583595	FAM126B	Q8IXS8	530 aa		5.68	□□□□□ -1.5
SS18-223	ENST00000583595	TTLL11	Q8NHH1	800 aa		5.68	□□□□□ -1.5
SS18-223	ENST00000583595	HDAC2	Q92769	488 aa	Known RBP	5.68	□□□□□ -1.5
SS18-223	ENST00000583595	TMX3	Q96JJ7	454 aa		5.68	□□□□□ -1.5
SS18-223	ENST00000583595	ZC3H10	Q96K80	434 aa	Known RBP	5.68	□□□□□ -1.5
SS18-223	ENST00000583595	HIST1H2AH	Q96KK5	128 aa		5.68	□□□□□ -1.5
SS18-223	ENST00000583595	HIST1H2AJ	Q99878	128 aa		5.68	□□□□□ -1.5
SS18-223	ENST00000583595	C11orf84	Q9BUA3	381 aa	Predicted RBP	5.68	□□□□□ -1.5
SS18-223	ENST00000583595	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	5.68	□□□□□ -1.5
SS18-223	ENST00000583595	GALNT8	Q9NY28	637 aa		5.68	□□□□□ -1.5
SS18-223	ENST00000583595	NTM	Q9P121	344 aa		5.68	□□□□□ -1.5
SS18-223	ENST00000583595	SCAF8	Q9UPN6	1271 aa	Known RBP	5.68	□□□□□ -1.5
SS18-223	ENST00000583595	ITIH6	Q6UXX5	1313 aa		5.68	□□□□□ -1.5
SS18-223	ENST00000583595	PRICKLE3	O43900	615 aa	Predicted RBP	5.67	□□□□□ -1.5
SS18-223	ENST00000583595	NOBOX	O60393	691 aa		5.67	□□□□□ -1.5
SS18-223	ENST00000583595	TMEM127	O75204	238 aa		5.67	□□□□□ -1.5
SS18-223	ENST00000583595	AHSG	P02765	367 aa		5.67	□□□□□ -1.5
SS18-223	ENST00000583595	MYL4	P12829	197 aa		5.67	□□□□□ -1.5
SS18-223	ENST00000583595	EN2	P19622	333 aa	Predicted RBP	5.67	□□□□□ -1.5
SS18-223	ENST00000583595	CREM	Q03060	361 aa		5.67	□□□□□ -1.5
SS18-223	ENST00000583595	ADAM9	Q13443	819 aa		5.67	□□□□□ -1.5
SS18-223	ENST00000583595	PDE1C	Q14123	709 aa	Predicted RBP	5.67	□□□□□ -1.5
SS18-223	ENST00000583595	ICE2	Q659A1	982 aa		5.67	□□□□□ -1.5
SS18-223	ENST00000583595	MOGAT3	Q86VF5	341 aa		5.67	□□□□□ -1.5
SS18-223	ENST00000583595	HEATR4	Q86WZ0	1026 aa		5.67	□□□□□ -1.5
SS18-223	ENST00000583595	STYX	Q8WUJ0	223 aa		5.67	□□□□□ -1.5
SS18-223	ENST00000583595	HOXB13	Q92826	284 aa	Predicted RBP	5.67	□□□□□ -1.5
SS18-223	ENST00000583595	RILPL2	Q969X0	211 aa		5.67	□□□□□ -1.5
SS18-223	ENST00000583595	SUCLG2	Q96I99	432 aa		5.67	□□□□□ -1.5
SS18-223	ENST00000583595	FAM167A	Q96KS9	214 aa		5.67	□□□□□ -1.5
SS18-223	ENST00000583595	CNPPD1	Q9BV87	410 aa		5.67	□□□□□ -1.5
SS18-223	ENST00000583595	LDAH	Q9H6V9	325 aa		5.67	□□□□□ -1.5
SS18-223	ENST00000583595	PIH1D1	Q9NWS0	290 aa	Known RBP	5.67	□□□□□ -1.5
SS18-223	ENST00000583595	IGSF9	Q9P2J2	1179 aa		5.67	□□□□□ -1.5
SS18-223	ENST00000583595	WASF3	Q9UPY6	502 aa		5.67	□□□□□ -1.5
SS18-223	ENST00000583595	AFG3L2	Q9Y4W6	797 aa		5.67	□□□□□ -1.5
SS18-223	ENST00000583595	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	5.67	□□□□□ -1.5
SS18-223	ENST00000583595	FAM234B	A2RU67	622 aa		5.66	□□□□□ -1.5
SS18-223	ENST00000583595	GFPT2	O94808	682 aa		5.66	□□□□□ -1.5
SS18-223	ENST00000583595	SEC24D	O94855	1032 aa	Predicted RBP	5.66	□□□□□ -1.5

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