RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 ARHGEF3Q9NR81 526 aa22.31■■□□□ 1.16
SHMT1-209ENST00000582653 DOCK6Q96HP0 2047 aa22.31■■□□□ 1.16
SHMT1-209ENST00000582653 WDR27A2RRH5 827 aa22.3■■□□□ 1.16
SHMT1-209ENST00000582653 HNRNPDLO14979 420 aaKnown RBP22.3■■□□□ 1.16
SHMT1-209ENST00000582653 CLTAP09496 248 aa22.3■■□□□ 1.16
SHMT1-209ENST00000582653 PTPN2P17706 415 aa22.3■■□□□ 1.16
SHMT1-209ENST00000582653 RFX1P22670 979 aa22.3■■□□□ 1.16
SHMT1-209ENST00000582653 ARPP19P56211 112 aa22.3■■□□□ 1.16
SHMT1-209ENST00000582653 STARD6P59095 220 aa22.3■■□□□ 1.16
SHMT1-209ENST00000582653 ASCL5Q7RTU5 278 aa22.3■■□□□ 1.16
SHMT1-209ENST00000582653 TCEAL8Q8IYN2 117 aa22.3■■□□□ 1.16
SHMT1-209ENST00000582653 INTS4Q96HW7 963 aaKnown RBP22.3■■□□□ 1.16
SHMT1-209ENST00000582653 SUSD3Q96L08 255 aa22.3■■□□□ 1.16
SHMT1-209ENST00000582653 FIZ1Q96SL8 496 aa22.3■■□□□ 1.16
SHMT1-209ENST00000582653 MTMR6Q9Y217 621 aa22.3■■□□□ 1.16
SHMT1-209ENST00000582653 SIT1Q9Y3P8 196 aa22.3■■□□□ 1.16
SHMT1-209ENST00000582653 ZFHX2Q9C0A1 2572 aaPredicted RBP22.29■■□□□ 1.16
SHMT1-209ENST00000582653 TTC26A0AVF1 554 aa22.29■■□□□ 1.16
SHMT1-209ENST00000582653 LACTBL1A8MY62 500 aa22.29■■□□□ 1.16
SHMT1-209ENST00000582653 TBCAO75347 108 aaKnown RBP22.29■■□□□ 1.16
SHMT1-209ENST00000582653 SCP2P22307 547 aa22.29■■□□□ 1.16
SHMT1-209ENST00000582653 ZC2HC1CQ53FD0 456 aaPredicted RBP22.29■■□□□ 1.16
SHMT1-209ENST00000582653 DYMQ7RTS9 669 aa22.29■■□□□ 1.16
SHMT1-209ENST00000582653 KIF12Q96FN5 646 aa22.29■■□□□ 1.16
SHMT1-209ENST00000582653 SHDQ96IW2 340 aa22.29■■□□□ 1.16
SHMT1-209ENST00000582653 FBXL5Q9UKA1 691 aa22.29■■□□□ 1.16
SHMT1-209ENST00000582653 MRPS23Q9Y3D9 190 aaKnown RBP22.29■■□□□ 1.16
SHMT1-209ENST00000582653 SRPRBQ9Y5M8 271 aaKnown RBP22.29■■□□□ 1.16
SHMT1-209ENST00000582653 CITO14578 2027 aa22.29■■□□□ 1.16
SHMT1-209ENST00000582653 FAM189A1O60320 539 aa22.28■■□□□ 1.16
SHMT1-209ENST00000582653 PIGRP01833 764 aa22.28■■□□□ 1.16
SHMT1-209ENST00000582653 LRG1P02750 347 aa22.28■■□□□ 1.16
SHMT1-209ENST00000582653 RHOP08100 348 aa22.28■■□□□ 1.16
SHMT1-209ENST00000582653 MCM4P33991 863 aa22.28■■□□□ 1.16
SHMT1-209ENST00000582653 ZBTB6Q15916 424 aa22.28■■□□□ 1.16
SHMT1-209ENST00000582653 TPGS2Q68CL5 300 aa22.28■■□□□ 1.16
SHMT1-209ENST00000582653 SLC39A4Q6P5W5 647 aa22.28■■□□□ 1.16
SHMT1-209ENST00000582653 FRMD5Q7Z6J6 570 aa22.28■■□□□ 1.16
SHMT1-209ENST00000582653 NPAS3Q8IXF0 933 aa22.28■■□□□ 1.16
SHMT1-209ENST00000582653 APPL2Q8NEU8 664 aa22.28■■□□□ 1.16
SHMT1-209ENST00000582653 DDX12PQ92771 950 aa22.28■■□□□ 1.16
SHMT1-209ENST00000582653 NKD2Q969F2 451 aaPredicted RBP22.28■■□□□ 1.16
SHMT1-209ENST00000582653 GDE1Q9NZC3 331 aa22.28■■□□□ 1.16
SHMT1-209ENST00000582653 MAFFQ9ULX9 164 aa22.28■■□□□ 1.16
SHMT1-209ENST00000582653 GTF3C5Q9Y5Q8 519 aaPredicted RBP22.28■■□□□ 1.16
SHMT1-209ENST00000582653 PRR23AA6NEV1 266 aa22.27■■□□□ 1.16
SHMT1-209ENST00000582653 ANKRD63C9JTQ0 380 aa22.27■■□□□ 1.16
SHMT1-209ENST00000582653 K7ELQ4 463 aaPredicted RBP22.27■■□□□ 1.16
SHMT1-209ENST00000582653 PRRG1O14668 218 aa22.27■■□□□ 1.16
SHMT1-209ENST00000582653 OGTO15294 1046 aa22.27■■□□□ 1.16
SHMT1-209ENST00000582653 CYP3A5P20815 502 aa22.27■■□□□ 1.16
SHMT1-209ENST00000582653 GUCY2FP51841 1108 aa22.27■■□□□ 1.16
SHMT1-209ENST00000582653 GTF2BQ00403 316 aa22.27■■□□□ 1.16
SHMT1-209ENST00000582653 ENOX2Q16206 610 aaKnown RBP22.27■■□□□ 1.16
SHMT1-209ENST00000582653 KYAT1Q16773 422 aa22.27■■□□□ 1.16
SHMT1-209ENST00000582653 CTXN3Q4LDR2 81 aa22.27■■□□□ 1.16
SHMT1-209ENST00000582653 KRI1Q8N9T8 703 aaKnown RBP22.27■■□□□ 1.16
SHMT1-209ENST00000582653 FAM212AQ96EL1 285 aa22.27■■□□□ 1.16
SHMT1-209ENST00000582653 USP28Q96RU2 1077 aa22.27■■□□□ 1.16
SHMT1-209ENST00000582653 MSTO1Q9BUK6 570 aa22.27■■□□□ 1.16
SHMT1-209ENST00000582653 IKZF4Q9H2S9 585 aa22.27■■□□□ 1.16
SHMT1-209ENST00000582653 CYP4F11Q9HBI6 524 aa22.27■■□□□ 1.16
SHMT1-209ENST00000582653 DLGAP2Q9P1A6 1054 aa22.27■■□□□ 1.16
SHMT1-209ENST00000582653 CCDC39Q9UFE4 941 aa22.27■■□□□ 1.16
SHMT1-209ENST00000582653 NOTCH4Q99466 2003 aa22.26■■□□□ 1.15
SHMT1-209ENST00000582653 A0A0B4J269 797 aa22.26■■□□□ 1.15
SHMT1-209ENST00000582653 TISP43B9A030 160 aa22.26■■□□□ 1.15
SHMT1-209ENST00000582653 SEC24AO95486 1093 aa22.26■■□□□ 1.15
SHMT1-209ENST00000582653 DCNP07585 359 aaKnown RBP22.26■■□□□ 1.15
SHMT1-209ENST00000582653 LRPAP1P30533 357 aa22.26■■□□□ 1.15
SHMT1-209ENST00000582653 PPP2R3AQ06190 1150 aa22.26■■□□□ 1.15
SHMT1-209ENST00000582653 SNW1Q13573 536 aaKnown RBP22.26■■□□□ 1.15
SHMT1-209ENST00000582653 SLC44A4Q53GD3 710 aa22.26■■□□□ 1.15
SHMT1-209ENST00000582653 RRAGBQ5VZM2 374 aa22.26■■□□□ 1.15
SHMT1-209ENST00000582653 MCRS1Q96EZ8 462 aa22.26■■□□□ 1.15
SHMT1-209ENST00000582653 TSPAN18Q96SJ8 248 aa22.26■■□□□ 1.15
SHMT1-209ENST00000582653 PANK2Q9BZ23 570 aa22.26■■□□□ 1.15
SHMT1-209ENST00000582653 RPF1Q9H9Y2 349 aaKnown RBP22.26■■□□□ 1.15
SHMT1-209ENST00000582653 PCDHB8Q9UN66 801 aa22.26■■□□□ 1.15
SHMT1-209ENST00000582653 TIMM13Q9Y5L4 95 aaPredicted RBP22.26■■□□□ 1.15
SHMT1-209ENST00000582653 MYMKA6NI61 221 aa22.25■■□□□ 1.15
SHMT1-209ENST00000582653 M0QZQ0 153 aa22.25■■□□□ 1.15
SHMT1-209ENST00000582653 ECI2O75521 394 aa22.25■■□□□ 1.15
SHMT1-209ENST00000582653 MICAL2O94851 1124 aa22.25■■□□□ 1.15
SHMT1-209ENST00000582653 ADRB2P07550 413 aa22.25■■□□□ 1.15
SHMT1-209ENST00000582653 PFKPQ01813 784 aa22.25■■□□□ 1.15
SHMT1-209ENST00000582653 PRKCQQ04759 706 aa22.25■■□□□ 1.15
SHMT1-209ENST00000582653 SLC5A9Q2M3M2 681 aa22.25■■□□□ 1.15
SHMT1-209ENST00000582653 ZNF280DQ6N043 979 aa22.25■■□□□ 1.15
SHMT1-209ENST00000582653 POTEHQ6S545 545 aa22.25■■□□□ 1.15
SHMT1-209ENST00000582653 SFR1Q86XK3 245 aa22.25■■□□□ 1.15
SHMT1-209ENST00000582653 MAP4K3Q8IVH8 894 aa22.25■■□□□ 1.15
SHMT1-209ENST00000582653 DDX23Q9BUQ8 820 aaKnown RBP22.25■■□□□ 1.15
SHMT1-209ENST00000582653 STK17AQ9UEE5 414 aa22.25■■□□□ 1.15
SHMT1-209ENST00000582653 AFF4Q9UHB7 1163 aaKnown RBP22.25■■□□□ 1.15
SHMT1-209ENST00000582653 CPSF3Q9UKF6 684 aaKnown RBP22.25■■□□□ 1.15
SHMT1-209ENST00000582653 UBQLN1Q9UMX0 589 aaKnown RBP22.25■■□□□ 1.15
SHMT1-209ENST00000582653 PDCD11Q14690 1871 aaKnown RBP22.25■■□□□ 1.15
SHMT1-209ENST00000582653 KANSL1LA0AUZ9 987 aa22.24■■□□□ 1.15
SHMT1-209ENST00000582653 ZNF197O14709 1029 aa22.24■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms