RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 NOMO2Q5JPE7 1267 aa11.03□□□□□ -0.64
SS18-207ENST00000577636 GLB1LQ6UWU2 654 aa11.03□□□□□ -0.64
SS18-207ENST00000577636 ANO5Q75V66 913 aa11.03□□□□□ -0.64
SS18-207ENST00000577636 MAEAQ7L5Y9 396 aa11.03□□□□□ -0.64
SS18-207ENST00000577636 APTXQ7Z2E3 356 aaKnown RBP11.03□□□□□ -0.64
SS18-207ENST00000577636 ZNF720Q7Z2F6 126 aa11.03□□□□□ -0.64
SS18-207ENST00000577636 GPR149Q86SP6 731 aa11.03□□□□□ -0.64
SS18-207ENST00000577636 IRF2BP1Q8IU81 584 aa11.03□□□□□ -0.64
SS18-207ENST00000577636 CCDC105Q8IYK2 499 aa11.03□□□□□ -0.64
SS18-207ENST00000577636 KIAA2013Q8IYS2 634 aa11.03□□□□□ -0.64
SS18-207ENST00000577636 LINC01465Q8N7H1 131 aa11.03□□□□□ -0.64
SS18-207ENST00000577636 ZNF397Q8NF99 534 aaPredicted RBP11.03□□□□□ -0.64
SS18-207ENST00000577636 BCL7CQ8WUZ0 217 aaPredicted RBP11.03□□□□□ -0.64
SS18-207ENST00000577636 SLC7A3Q8WY07 619 aa11.03□□□□□ -0.64
SS18-207ENST00000577636 HVCN1Q96D96 273 aa11.03□□□□□ -0.64
SS18-207ENST00000577636 KLHL5Q96PQ7 755 aa11.03□□□□□ -0.64
SS18-207ENST00000577636 FAM193BQ96PV7 902 aaPredicted RBP11.03□□□□□ -0.64
SS18-207ENST00000577636 ACCSQ96QU6 501 aa11.03□□□□□ -0.64
SS18-207ENST00000577636 SH2D3AQ9BRG2 576 aa11.03□□□□□ -0.64
SS18-207ENST00000577636 FDXACB1Q9BRP7 624 aaPredicted RBP11.03□□□□□ -0.64
SS18-207ENST00000577636 EMILIN2Q9BXX0 1053 aa11.03□□□□□ -0.64
SS18-207ENST00000577636 KCNF1Q9H3M0 494 aa11.03□□□□□ -0.64
SS18-207ENST00000577636 SFXN1Q9H9B4 322 aa11.03□□□□□ -0.64
SS18-207ENST00000577636 TBC1D13Q9NVG8 400 aa11.03□□□□□ -0.64
SS18-207ENST00000577636 DNAJB4Q9UDY4 337 aa11.03□□□□□ -0.64
SS18-207ENST00000577636 CA14Q9ULX7 337 aa11.03□□□□□ -0.64
SS18-207ENST00000577636 PIN4Q9Y237 131 aaKnown RBP11.03□□□□□ -0.64
SS18-207ENST00000577636 R4GN57 208 aa11.03□□□□□ -0.64
SS18-207ENST00000577636 MEIS3P2A8K0S8 358 aa11.02□□□□□ -0.65
SS18-207ENST00000577636 TEX33O43247 280 aa11.02□□□□□ -0.65
SS18-207ENST00000577636 OFD1O75665 1012 aa11.02□□□□□ -0.65
SS18-207ENST00000577636 LMNAP02545 664 aaKnown RBP11.02□□□□□ -0.65
SS18-207ENST00000577636 EPB41P11171 864 aaKnown RBP11.02□□□□□ -0.65
SS18-207ENST00000577636 NMT1P30419 496 aaKnown RBP11.02□□□□□ -0.65
SS18-207ENST00000577636 SLC11A1P49279 550 aa11.02□□□□□ -0.65
SS18-207ENST00000577636 LRMPQ12912 555 aa11.02□□□□□ -0.65
SS18-207ENST00000577636 TBX2Q13207 712 aaPredicted RBP11.02□□□□□ -0.65
SS18-207ENST00000577636 DNTTIP2Q5QJE6 756 aaKnown RBP11.02□□□□□ -0.65
SS18-207ENST00000577636 PLA2G4FQ68DD2 849 aa11.02□□□□□ -0.65
SS18-207ENST00000577636 DGLUCYQ7Z3D6 616 aa11.02□□□□□ -0.65
SS18-207ENST00000577636 ZNF280BQ86YH2 543 aa11.02□□□□□ -0.65
SS18-207ENST00000577636 ZNF710Q8N1W2 664 aa11.02□□□□□ -0.65
SS18-207ENST00000577636 GLIS3Q8NEA6 775 aa11.02□□□□□ -0.65
SS18-207ENST00000577636 ST13P5Q8NFI4 369 aaPredicted RBP11.02□□□□□ -0.65
SS18-207ENST00000577636 KIAA1524Q8TCG1 905 aa11.02□□□□□ -0.65
SS18-207ENST00000577636 RMDN1Q96DB5 314 aa11.02□□□□□ -0.65
SS18-207ENST00000577636 PANX2Q96RD6 677 aa11.02□□□□□ -0.65
SS18-207ENST00000577636 JPH2Q9BR39 696 aaPredicted RBP11.02□□□□□ -0.65
SS18-207ENST00000577636 NAA15Q9BXJ9 866 aaKnown RBP11.02□□□□□ -0.65
SS18-207ENST00000577636 KCTD10Q9H3F6 313 aa11.02□□□□□ -0.65
SS18-207ENST00000577636 NDST4Q9H3R1 872 aa11.02□□□□□ -0.65
SS18-207ENST00000577636 INTS13Q9NVM9 706 aa11.02□□□□□ -0.65
SS18-207ENST00000577636 ZNHIT6Q9NWK9 470 aaKnown RBP11.02□□□□□ -0.65
SS18-207ENST00000577636 ARMCX3Q9UH62 379 aaPredicted RBP11.02□□□□□ -0.65
SS18-207ENST00000577636 DUSP12Q9UNI6 340 aa11.02□□□□□ -0.65
SS18-207ENST00000577636 FRMD4BQ9Y2L6 1034 aa11.02□□□□□ -0.65
SS18-207ENST00000577636 FAN1Q9Y2M0 1017 aa11.02□□□□□ -0.65
SS18-207ENST00000577636 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.02□□□□□ -0.65
SS18-207ENST00000577636 DMDP11532 3685 aa11.02□□□□□ -0.65
SS18-207ENST00000577636 CCDC195A0A1B0GUA6 201 aa11.01□□□□□ -0.65
SS18-207ENST00000577636 MED19A0JLT2 244 aaPredicted RBP11.01□□□□□ -0.65
SS18-207ENST00000577636 TMEM150BA6NC51 233 aa11.01□□□□□ -0.65
SS18-207ENST00000577636 CCDC169A6NNP5 214 aa11.01□□□□□ -0.65
SS18-207ENST00000577636 STX10O60499 249 aa11.01□□□□□ -0.65
SS18-207ENST00000577636 NR3C1P04150 777 aa11.01□□□□□ -0.65
SS18-207ENST00000577636 ALDH2P05091 517 aa11.01□□□□□ -0.65
SS18-207ENST00000577636 DCNP07585 359 aaKnown RBP11.01□□□□□ -0.65
SS18-207ENST00000577636 CNPP09543 421 aaKnown RBP11.01□□□□□ -0.65
SS18-207ENST00000577636 SKIP12755 728 aa11.01□□□□□ -0.65
SS18-207ENST00000577636 TRIM21P19474 475 aaKnown RBP11.01□□□□□ -0.65
SS18-207ENST00000577636 PSMC2P35998 433 aaKnown RBP11.01□□□□□ -0.65
SS18-207ENST00000577636 PBX1P40424 430 aa11.01□□□□□ -0.65
SS18-207ENST00000577636 CLCN4P51793 760 aa11.01□□□□□ -0.65
SS18-207ENST00000577636 CASP5P51878 434 aa11.01□□□□□ -0.65
SS18-207ENST00000577636 NPEPPSP55786 919 aa11.01□□□□□ -0.65
SS18-207ENST00000577636 MARSP56192 900 aaKnown RBP11.01□□□□□ -0.65
SS18-207ENST00000577636 PEX3P56589 373 aa11.01□□□□□ -0.65
SS18-207ENST00000577636 MYBPC2Q14324 1141 aa11.01□□□□□ -0.65
SS18-207ENST00000577636 NOLC1Q14978 699 aaKnown RBP eCLIP11.01□□□□□ -0.65
SS18-207ENST00000577636 PPP2R5AQ15172 486 aa11.01□□□□□ -0.65
SS18-207ENST00000577636 PTPN14Q15678 1187 aa11.01□□□□□ -0.65
SS18-207ENST00000577636 ARMCX5Q6P1M9 558 aa11.01□□□□□ -0.65
SS18-207ENST00000577636 CATSPER4Q7RTX7 472 aa11.01□□□□□ -0.65
SS18-207ENST00000577636 HAUS6Q7Z4H7 955 aa11.01□□□□□ -0.65
SS18-207ENST00000577636 RHPN2Q8IUC4 686 aa11.01□□□□□ -0.65
SS18-207ENST00000577636 URGCPQ8TCY9 931 aa11.01□□□□□ -0.65
SS18-207ENST00000577636 CPLX3Q8WVH0 158 aa11.01□□□□□ -0.65
SS18-207ENST00000577636 SPIRE2Q8WWL2 714 aa11.01□□□□□ -0.65
SS18-207ENST00000577636 EEF2KMTQ96G04 330 aa11.01□□□□□ -0.65
SS18-207ENST00000577636 NLRP4Q96MN2 994 aa11.01□□□□□ -0.65
SS18-207ENST00000577636 BAG1Q99933 345 aaPredicted RBP11.01□□□□□ -0.65
SS18-207ENST00000577636 FGFBP2Q9BYJ0 223 aa11.01□□□□□ -0.65
SS18-207ENST00000577636 ST6GALNAC4Q9H4F1 302 aa11.01□□□□□ -0.65
SS18-207ENST00000577636 KMT5AQ9NQR1 393 aa11.01□□□□□ -0.65
SS18-207ENST00000577636 CHST12Q9NRB3 414 aa11.01□□□□□ -0.65
SS18-207ENST00000577636 FAM105AQ9NUU6 356 aa11.01□□□□□ -0.65
SS18-207ENST00000577636 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.01□□□□□ -0.65
SS18-207ENST00000577636 LUC7L2Q9Y383 392 aaKnown RBP11.01□□□□□ -0.65
SS18-207ENST00000577636 IRAK3Q9Y616 596 aa11.01□□□□□ -0.65
SS18-207ENST00000577636 KRBA1A5PL33 1030 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms