RNA–Protein interactions for RNA: ENST00000577572.5

SS18-206, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 510 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-206ENST00000577572 NLRC4Q9NPP4 1024 aa16.42■□□□□ 0.22
SS18-206ENST00000577572 PRKAG2Q9UGJ0 569 aa16.42■□□□□ 0.22
SS18-206ENST00000577572 TANC1Q9C0D5 1861 aa16.42■□□□□ 0.22
SS18-206ENST00000577572 SSU72P8A0A1W2PR75 194 aa16.41■□□□□ 0.22
SS18-206ENST00000577572 LRRC53A6NM62 1247 aa16.41■□□□□ 0.22
SS18-206ENST00000577572 PIRO00625 290 aa16.41■□□□□ 0.22
SS18-206ENST00000577572 PTGESO14684 152 aa16.41■□□□□ 0.22
SS18-206ENST00000577572 GFPT2O94808 682 aa16.41■□□□□ 0.22
SS18-206ENST00000577572 BAIAP3O94812 1187 aa16.41■□□□□ 0.22
SS18-206ENST00000577572 SERPING1P05155 500 aa16.41■□□□□ 0.22
SS18-206ENST00000577572 SKILP12757 684 aa16.41■□□□□ 0.22
SS18-206ENST00000577572 MLH1P40692 756 aa16.41■□□□□ 0.22
SS18-206ENST00000577572 BPIFB4P59827 614 aa16.41■□□□□ 0.22
SS18-206ENST00000577572 MYL6P60660 151 aa16.41■□□□□ 0.22
SS18-206ENST00000577572 DRAP1Q14919 205 aaPredicted RBP16.41■□□□□ 0.22
SS18-206ENST00000577572 ZNF699Q32M78 642 aa16.41■□□□□ 0.22
SS18-206ENST00000577572 ZNF667Q5HYK9 610 aa16.41■□□□□ 0.22
SS18-206ENST00000577572 NPAS4Q8IUM7 802 aa16.41■□□□□ 0.22
SS18-206ENST00000577572 URGCPQ8TCY9 931 aa16.41■□□□□ 0.22
SS18-206ENST00000577572 SCLYQ96I15 445 aa16.41■□□□□ 0.22
SS18-206ENST00000577572 GAD1Q99259 594 aa16.41■□□□□ 0.22
SS18-206ENST00000577572 AGAP1Q9UPQ3 857 aa16.41■□□□□ 0.22
SS18-206ENST00000577572 CNTN6Q9UQ52 1028 aa16.41■□□□□ 0.22
SS18-206ENST00000577572 PCDHB7Q9Y5E2 793 aa16.41■□□□□ 0.22
SS18-206ENST00000577572 CARNS1A5YM72 827 aa16.4■□□□□ 0.22
SS18-206ENST00000577572 TRIM43BA6NCK2 446 aa16.4■□□□□ 0.22
SS18-206ENST00000577572 TULP1O00294 542 aaPredicted RBP16.4■□□□□ 0.22
SS18-206ENST00000577572 OFD1O75665 1012 aa16.4■□□□□ 0.22
SS18-206ENST00000577572 KRT19P08727 400 aa16.4■□□□□ 0.22
SS18-206ENST00000577572 POLR2BP30876 1174 aaKnown RBP16.4■□□□□ 0.22
SS18-206ENST00000577572 CCZ1BP86790 482 aa16.4■□□□□ 0.22
SS18-206ENST00000577572 CCZ1P86791 482 aaPredicted RBP16.4■□□□□ 0.22
SS18-206ENST00000577572 RAPGEF1Q13905 1077 aa16.4■□□□□ 0.22
SS18-206ENST00000577572 ASIC2Q16515 512 aa16.4■□□□□ 0.22
SS18-206ENST00000577572 C9orf57Q5W0N0 161 aa16.4■□□□□ 0.22
SS18-206ENST00000577572 TMEM139Q8IV31 216 aa16.4■□□□□ 0.22
SS18-206ENST00000577572 ARHGEF19Q8IW93 802 aa16.4■□□□□ 0.22
SS18-206ENST00000577572 FAM71AQ8IYT1 594 aa16.4■□□□□ 0.22
SS18-206ENST00000577572 CRIPAKQ8N1N5 446 aa16.4■□□□□ 0.22
SS18-206ENST00000577572 TRIM43Q96BQ3 446 aaPredicted RBP16.4■□□□□ 0.22
SS18-206ENST00000577572 HPDLQ96IR7 371 aa16.4■□□□□ 0.22
SS18-206ENST00000577572 KREMEN1Q96MU8 473 aa16.4■□□□□ 0.22
SS18-206ENST00000577572 KLK14Q9P0G3 267 aa16.4■□□□□ 0.22
SS18-206ENST00000577572 CITO14578 2027 aa16.4■□□□□ 0.22
SS18-206ENST00000577572 ARHGEF37A1IGU5 675 aa16.39■□□□□ 0.21
SS18-206ENST00000577572 LRMPQ12912 555 aa16.39■□□□□ 0.21
SS18-206ENST00000577572 MAPK8IP2Q13387 824 aaPredicted RBP16.39■□□□□ 0.21
SS18-206ENST00000577572 PPIGQ13427 754 aaKnown RBP eCLIP16.39■□□□□ 0.21
SS18-206ENST00000577572 NAB2Q15742 525 aa16.39■□□□□ 0.21
SS18-206ENST00000577572 SV2CQ496J9 727 aa16.39■□□□□ 0.21
SS18-206ENST00000577572 WDR59Q6PJI9 974 aa16.39■□□□□ 0.21
SS18-206ENST00000577572 DPH6Q7L8W6 267 aa16.39■□□□□ 0.21
SS18-206ENST00000577572 IRF2BP2Q7Z5L9 587 aa16.39■□□□□ 0.21
SS18-206ENST00000577572 TATDN2Q93075 761 aa16.39■□□□□ 0.21
SS18-206ENST00000577572 ZFP42Q96MM3 310 aa16.39■□□□□ 0.21
SS18-206ENST00000577572 MRPL9Q9BYD2 267 aaKnown RBP16.39■□□□□ 0.21
SS18-206ENST00000577572 BCO2Q9BYV7 579 aa16.39■□□□□ 0.21
SS18-206ENST00000577572 GPR88Q9GZN0 384 aa16.39■□□□□ 0.21
SS18-206ENST00000577572 DNAI2Q9GZS0 605 aa16.39■□□□□ 0.21
SS18-206ENST00000577572 KCNF1Q9H3M0 494 aa16.39■□□□□ 0.21
SS18-206ENST00000577572 APOBEC3GQ9HC16 384 aaKnown RBP16.39■□□□□ 0.21
SS18-206ENST00000577572 PRDM5Q9NQX1 630 aaPredicted RBP16.39■□□□□ 0.21
SS18-206ENST00000577572 GDAP2Q9NXN4 497 aa16.39■□□□□ 0.21
SS18-206ENST00000577572 LRFN2Q9ULH4 789 aa16.39■□□□□ 0.21
SS18-206ENST00000577572 ZKSCAN5Q9Y2L8 839 aa16.39■□□□□ 0.21
SS18-206ENST00000577572 NUB1Q9Y5A7 615 aa16.39■□□□□ 0.21
SS18-206ENST00000577572 BRCA2P51587 3418 aa16.39■□□□□ 0.21
SS18-206ENST00000577572 ANK1P16157 1881 aa16.38■□□□□ 0.21
SS18-206ENST00000577572 TAF6P49848 677 aa16.38■□□□□ 0.21
SS18-206ENST00000577572 APBA1Q02410 837 aa16.38■□□□□ 0.21
SS18-206ENST00000577572 TUSC3Q13454 348 aa16.38■□□□□ 0.21
SS18-206ENST00000577572 NOMO2Q5JPE7 1267 aa16.38■□□□□ 0.21
SS18-206ENST00000577572 GJB7Q6PEY0 223 aa16.38■□□□□ 0.21
SS18-206ENST00000577572 VPS36Q86VN1 386 aa16.38■□□□□ 0.21
SS18-206ENST00000577572 ABI1Q8IZP0 508 aa16.38■□□□□ 0.21
SS18-206ENST00000577572 SPATA18Q8TC71 538 aa16.38■□□□□ 0.21
SS18-206ENST00000577572 LPPQ93052 612 aa16.38■□□□□ 0.21
SS18-206ENST00000577572 C18orf25Q96B23 403 aaPredicted RBP16.38■□□□□ 0.21
SS18-206ENST00000577572 PI4K2AQ9BTU6 479 aa16.38■□□□□ 0.21
SS18-206ENST00000577572 IL23AQ9NPF7 189 aa16.38■□□□□ 0.21
SS18-206ENST00000577572 KCND1Q9NSA2 647 aa16.38■□□□□ 0.21
SS18-206ENST00000577572 TUBGCP4Q9UGJ1 667 aa16.38■□□□□ 0.21
SS18-206ENST00000577572 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.38■□□□□ 0.214e-6■■■□□ 17.6
SS18-206ENST00000577572 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.37■□□□□ 0.21
SS18-206ENST00000577572 FOXN3O00409 490 aaPredicted RBP16.37■□□□□ 0.21
SS18-206ENST00000577572 CCP110O43303 1012 aa16.37■□□□□ 0.21
SS18-206ENST00000577572 CYLC1P35663 651 aaPredicted RBP16.37■□□□□ 0.21
SS18-206ENST00000577572 ASPAP45381 313 aa16.37■□□□□ 0.21
SS18-206ENST00000577572 SCNN1GP51170 649 aa16.37■□□□□ 0.21
SS18-206ENST00000577572 TNNC1P63316 161 aa16.37■□□□□ 0.21
SS18-206ENST00000577572 KLHL30Q0D2K2 578 aa16.37■□□□□ 0.21
SS18-206ENST00000577572 ARHGAP44Q17R89 818 aa16.37■□□□□ 0.21
SS18-206ENST00000577572 WDR72Q3MJ13 1102 aa16.37■□□□□ 0.21
SS18-206ENST00000577572 GLRA4Q5JXX5 417 aa16.37■□□□□ 0.21
SS18-206ENST00000577572 HGSNATQ68CP4 663 aa16.37■□□□□ 0.21
SS18-206ENST00000577572 DEFB128Q7Z7B8 93 aa16.37■□□□□ 0.21
SS18-206ENST00000577572 ZNF677Q86XU0 584 aa16.37■□□□□ 0.21
SS18-206ENST00000577572 UBR7Q8N806 425 aa16.37■□□□□ 0.21
SS18-206ENST00000577572 RNF169Q8NCN4 708 aa16.37■□□□□ 0.21
SS18-206ENST00000577572 CCDC42Q96M95 316 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms