RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 PIK3CAP42336 1068 aa18.15■□□□□ 0.5
VPS53-215ENST00000573028 STRN3Q13033 797 aa18.15■□□□□ 0.5
VPS53-215ENST00000573028 CGB2Q6NT52 195 aa18.15■□□□□ 0.5
VPS53-215ENST00000573028 ADGRA3Q8IWK6 1321 aa18.15■□□□□ 0.5
VPS53-215ENST00000573028 OGFOD1Q8N543 542 aa18.15■□□□□ 0.5
VPS53-215ENST00000573028 CLEC4DQ8WXI8 215 aa18.15■□□□□ 0.5
VPS53-215ENST00000573028 TBC1D22BQ9NU19 505 aa18.15■□□□□ 0.5
VPS53-215ENST00000573028 COQ4Q9Y3A0 265 aa18.15■□□□□ 0.5
VPS53-215ENST00000573028 PCDHB4Q9Y5E5 795 aa18.15■□□□□ 0.5
VPS53-215ENST00000573028 UBIAD1Q9Y5Z9 338 aa18.15■□□□□ 0.5
VPS53-215ENST00000573028 ANKRD31Q8N7Z5 1873 aa18.14■□□□□ 0.5
VPS53-215ENST00000573028 WDR64B1ANS9 1081 aa18.14■□□□□ 0.49
VPS53-215ENST00000573028 C21orf2O43822 256 aa18.14■□□□□ 0.49
VPS53-215ENST00000573028 DSG3P32926 999 aa18.14■□□□□ 0.49
VPS53-215ENST00000573028 ZNF268Q14587 947 aaPredicted RBP18.14■□□□□ 0.49
VPS53-215ENST00000573028 ERICH1Q86X53 443 aa18.14■□□□□ 0.49
VPS53-215ENST00000573028 ECHDC2Q86YB7 292 aa18.14■□□□□ 0.49
VPS53-215ENST00000573028 GPD1LQ8N335 351 aa18.14■□□□□ 0.49
VPS53-215ENST00000573028 FAM151AQ8WW52 585 aa18.14■□□□□ 0.49
VPS53-215ENST00000573028 SLCO2A1Q92959 643 aa18.14■□□□□ 0.49
VPS53-215ENST00000573028 TELO2Q9Y4R8 837 aa18.14■□□□□ 0.49
VPS53-215ENST00000573028 MYPNQ86TC9 1320 aa18.14■□□□□ 0.49
VPS53-215ENST00000573028 A0A1B0GUA9 196 aa18.14■□□□□ 0.49
VPS53-215ENST00000573028 MSH2P43246 934 aa18.14■□□□□ 0.49
VPS53-215ENST00000573028 IL9RQ01113 521 aa18.14■□□□□ 0.49
VPS53-215ENST00000573028 FASTKD3Q14CZ7 662 aaKnown RBP18.14■□□□□ 0.49
VPS53-215ENST00000573028 BRDTQ58F21 947 aaPredicted RBP18.14■□□□□ 0.49
VPS53-215ENST00000573028 C4orf19Q8IY42 314 aa18.14■□□□□ 0.49
VPS53-215ENST00000573028 GBP7Q8N8V2 638 aaPredicted RBP18.14■□□□□ 0.49
VPS53-215ENST00000573028 ZNF516Q92618 1163 aa18.14■□□□□ 0.49
VPS53-215ENST00000573028 RXFP1Q9HBX9 757 aa18.14■□□□□ 0.49
VPS53-215ENST00000573028 PCDHB2Q9Y5E7 798 aa18.14■□□□□ 0.49
VPS53-215ENST00000573028 MAPK13O15264 365 aa18.13■□□□□ 0.49
VPS53-215ENST00000573028 TLR3O15455 904 aaKnown RBP18.13■□□□□ 0.49
VPS53-215ENST00000573028 SKAP2O75563 359 aaPredicted RBP18.13■□□□□ 0.49
VPS53-215ENST00000573028 PROSCO94903 275 aa18.13■□□□□ 0.49
VPS53-215ENST00000573028 FDX1P10109 184 aa18.13■□□□□ 0.49
VPS53-215ENST00000573028 TCF4P15884 667 aa18.13■□□□□ 0.49
VPS53-215ENST00000573028 TAC1P20366 129 aa18.13■□□□□ 0.49
VPS53-215ENST00000573028 GALNTL6Q49A17 601 aa18.13■□□□□ 0.49
VPS53-215ENST00000573028 LIN9Q5TKA1 542 aa18.13■□□□□ 0.49
VPS53-215ENST00000573028 RHOT1Q8IXI2 618 aa18.13■□□□□ 0.49
VPS53-215ENST00000573028 SLC17A8Q8NDX2 589 aa18.13■□□□□ 0.49
VPS53-215ENST00000573028 GADD45GIP1Q8TAE8 222 aaPredicted RBP18.13■□□□□ 0.49
VPS53-215ENST00000573028 TMEM237Q96Q45 408 aa18.13■□□□□ 0.49
VPS53-215ENST00000573028 NRXN2Q9P2S2 1712 aa18.13■□□□□ 0.49
VPS53-215ENST00000573028 WDR4P57081 412 aaKnown RBP18.13■□□□□ 0.49
VPS53-215ENST00000573028 FKBP1AP62942 108 aaKnown RBP18.13■□□□□ 0.49
VPS53-215ENST00000573028 LACTBP83111 547 aaPredicted RBP18.13■□□□□ 0.49
VPS53-215ENST00000573028 ARHGEF16Q5VV41 709 aa18.13■□□□□ 0.49
VPS53-215ENST00000573028 MIS18BP1Q6P0N0 1132 aa18.13■□□□□ 0.49
VPS53-215ENST00000573028 ZNF449Q6P9G9 518 aa18.13■□□□□ 0.49
VPS53-215ENST00000573028 ANKRD35Q8N283 1001 aa18.13■□□□□ 0.49
VPS53-215ENST00000573028 ERP27Q96DN0 273 aa18.13■□□□□ 0.49
VPS53-215ENST00000573028 MAGEB18Q96M61 343 aa18.13■□□□□ 0.49
VPS53-215ENST00000573028 NOP53Q9NZM5 478 aaKnown RBP18.13■□□□□ 0.49
VPS53-215ENST00000573028 FAM47DPA6NHR8 397 aa18.13■□□□□ 0.49
VPS53-215ENST00000573028 HLA-DRAP01903 254 aa18.13■□□□□ 0.49
VPS53-215ENST00000573028 PSMC4P43686 418 aa18.13■□□□□ 0.49
VPS53-215ENST00000573028 WNT7BP56706 349 aa18.13■□□□□ 0.49
VPS53-215ENST00000573028 CAV1Q03135 178 aa18.13■□□□□ 0.49
VPS53-215ENST00000573028 SEZ6Q53EL9 994 aa18.13■□□□□ 0.49
VPS53-215ENST00000573028 PCNX4Q63HM2 1172 aa18.13■□□□□ 0.49
VPS53-215ENST00000573028 SEPT9Q9UHD8 586 aaPredicted RBP18.13■□□□□ 0.49
VPS53-215ENST00000573028 DNPEPQ9ULA0 475 aa18.13■□□□□ 0.49
VPS53-215ENST00000573028 C15orf41Q9Y2V0 281 aa18.13■□□□□ 0.49
VPS53-215ENST00000573028 SLC1A1P43005 524 aa18.12■□□□□ 0.49
VPS53-215ENST00000573028 LIG4P49917 911 aa18.12■□□□□ 0.49
VPS53-215ENST00000573028 PGM5Q15124 567 aa18.12■□□□□ 0.49
VPS53-215ENST00000573028 TMEM63BQ5T3F8 832 aa18.12■□□□□ 0.49
VPS53-215ENST00000573028 PPP1R21Q6ZMI0 780 aa18.12■□□□□ 0.49
VPS53-215ENST00000573028 SYDE1Q6ZW31 735 aaPredicted RBP18.12■□□□□ 0.49
VPS53-215ENST00000573028 RPAINQ86UA6 219 aa18.12■□□□□ 0.49
VPS53-215ENST00000573028 MCF2L2Q86YR7 1114 aa18.12■□□□□ 0.49
VPS53-215ENST00000573028 MFSD14AQ96MC6 490 aa18.12■□□□□ 0.49
VPS53-215ENST00000573028 ST6GALNAC4Q9H4F1 302 aa18.12■□□□□ 0.49
VPS53-215ENST00000573028 NEU2Q9Y3R4 380 aa18.12■□□□□ 0.49
VPS53-215ENST00000573028 CEP83Q9Y592 693 aa18.12■□□□□ 0.49
VPS53-215ENST00000573028 SLX4Q8IY92 1834 aa18.12■□□□□ 0.49
VPS53-215ENST00000573028 BANF1O75531 89 aa18.12■□□□□ 0.49
VPS53-215ENST00000573028 TARSP26639 723 aaKnown RBP18.12■□□□□ 0.49
VPS53-215ENST00000573028 RNASELQ05823 741 aaKnown RBP18.12■□□□□ 0.49
VPS53-215ENST00000573028 GPS1Q13098 491 aa18.12■□□□□ 0.49
VPS53-215ENST00000573028 STAT4Q14765 748 aa18.12■□□□□ 0.49
VPS53-215ENST00000573028 SWSAP1Q6NVH7 229 aa18.12■□□□□ 0.49
VPS53-215ENST00000573028 NLRX1Q86UT6 975 aa18.12■□□□□ 0.49
VPS53-215ENST00000573028 TMC2Q8TDI7 906 aa18.12■□□□□ 0.49
VPS53-215ENST00000573028 FBF1Q8TES7 1133 aa18.12■□□□□ 0.49
VPS53-215ENST00000573028 C7orf43Q8WVR3 580 aa18.12■□□□□ 0.49
VPS53-215ENST00000573028 MIEF2Q96C03 454 aa18.12■□□□□ 0.49
VPS53-215ENST00000573028 WDR91A4D1P6 747 aa18.11■□□□□ 0.49
VPS53-215ENST00000573028 CA4P22748 312 aa18.11■□□□□ 0.49
VPS53-215ENST00000573028 GNA15P30679 374 aa18.11■□□□□ 0.49
VPS53-215ENST00000573028 PTGER2P43116 358 aa18.11■□□□□ 0.49
VPS53-215ENST00000573028 ARSEP51690 589 aa18.11■□□□□ 0.49
VPS53-215ENST00000573028 RPL7AP62424 266 aaKnown RBP18.11■□□□□ 0.49
VPS53-215ENST00000573028 ATP11AP98196 1134 aa18.11■□□□□ 0.49
VPS53-215ENST00000573028 RIPK1Q13546 671 aa18.11■□□□□ 0.49
VPS53-215ENST00000573028 PKN2Q16513 984 aaKnown RBP18.11■□□□□ 0.49
VPS53-215ENST00000573028 CCNG2Q16589 344 aa18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms