RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 DSC1Q08554 894 aa9.13□□□□□ -0.95
SF3B3-212ENST00000568539 TUSC3Q13454 348 aa9.13□□□□□ -0.95
SF3B3-212ENST00000568539 UVSSAQ2YD98 709 aa9.13□□□□□ -0.95
SF3B3-212ENST00000568539 TDRD10Q5VZ19 366 aaKnown RBP9.13□□□□□ -0.95
SF3B3-212ENST00000568539 KRT39Q6A163 491 aa9.13□□□□□ -0.95
SF3B3-212ENST00000568539 SCARA3Q6AZY7 606 aa9.13□□□□□ -0.95
SF3B3-212ENST00000568539 Q7L0L9 218 aa9.13□□□□□ -0.95
SF3B3-212ENST00000568539 TRAPPC11Q7Z392 1133 aa9.13□□□□□ -0.95
SF3B3-212ENST00000568539 ZNF280BQ86YH2 543 aa9.13□□□□□ -0.95
SF3B3-212ENST00000568539 TMEM130Q8N3G9 435 aa9.13□□□□□ -0.95
SF3B3-212ENST00000568539 C1orf127Q8N9H9 656 aa9.13□□□□□ -0.95
SF3B3-212ENST00000568539 BEST2Q8NFU1 509 aa9.13□□□□□ -0.95
SF3B3-212ENST00000568539 CXorf38Q8TB03 319 aa9.13□□□□□ -0.95
SF3B3-212ENST00000568539 CACTINQ8WUQ7 758 aaKnown RBP9.13□□□□□ -0.95
SF3B3-212ENST00000568539 ANKRD36BP1Q96IX9 119 aa9.13□□□□□ -0.95
SF3B3-212ENST00000568539 NAP1L5Q96NT1 182 aaPredicted RBP9.13□□□□□ -0.95
SF3B3-212ENST00000568539 MRPL9Q9BYD2 267 aaKnown RBP9.13□□□□□ -0.95
SF3B3-212ENST00000568539 MMRN2Q9H8L6 949 aa9.13□□□□□ -0.95
SF3B3-212ENST00000568539 DPP3Q9NY33 737 aa9.13□□□□□ -0.95
SF3B3-212ENST00000568539 SIX4Q9UIU6 781 aa9.13□□□□□ -0.95
SF3B3-212ENST00000568539 COQ4Q9Y3A0 265 aa9.13□□□□□ -0.95
SF3B3-212ENST00000568539 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.13□□□□□ -0.95
SF3B3-212ENST00000568539 MYH11P35749 1972 aa9.13□□□□□ -0.95
SF3B3-212ENST00000568539 COL4A6Q14031 1691 aa9.13□□□□□ -0.95
SF3B3-212ENST00000568539 SCN5AQ14524 2016 aa9.12□□□□□ -0.95
SF3B3-212ENST00000568539 ANO9A1A5B4 782 aa9.12□□□□□ -0.95
SF3B3-212ENST00000568539 GOLGA6L3A6NEY3 463 aa9.12□□□□□ -0.95
SF3B3-212ENST00000568539 P4HA2O15460 535 aa9.12□□□□□ -0.95
SF3B3-212ENST00000568539 N4BP1O75113 896 aaKnown RBP9.12□□□□□ -0.95
SF3B3-212ENST00000568539 VNN1O95497 513 aa9.12□□□□□ -0.95
SF3B3-212ENST00000568539 CST3P01034 146 aaPredicted RBP9.12□□□□□ -0.95
SF3B3-212ENST00000568539 ITGB3P05106 788 aa9.12□□□□□ -0.95
SF3B3-212ENST00000568539 MYL7Q01449 175 aa9.12□□□□□ -0.95
SF3B3-212ENST00000568539 RNASELQ05823 741 aaKnown RBP9.12□□□□□ -0.95
SF3B3-212ENST00000568539 BIRC3Q13489 604 aa9.12□□□□□ -0.95
SF3B3-212ENST00000568539 PAN2Q504Q3 1202 aaKnown RBP9.12□□□□□ -0.95
SF3B3-212ENST00000568539 FAM109BQ6ICB4 259 aaPredicted RBP9.12□□□□□ -0.95
SF3B3-212ENST00000568539 SARM1Q6SZW1 724 aa9.12□□□□□ -0.95
SF3B3-212ENST00000568539 COLGALT2Q8IYK4 626 aa9.12□□□□□ -0.95
SF3B3-212ENST00000568539 CMTR2Q8IYT2 770 aaKnown RBP9.12□□□□□ -0.95
SF3B3-212ENST00000568539 LRRC43Q8N309 656 aa9.12□□□□□ -0.95
SF3B3-212ENST00000568539 TAS1R2Q8TE23 839 aa9.12□□□□□ -0.95
SF3B3-212ENST00000568539 YME1L1Q96TA2 773 aa9.12□□□□□ -0.95
SF3B3-212ENST00000568539 RAD9AQ99638 391 aa9.12□□□□□ -0.95
SF3B3-212ENST00000568539 ZBED2Q9BTP6 218 aa9.12□□□□□ -0.95
SF3B3-212ENST00000568539 CWH43Q9H720 699 aa9.12□□□□□ -0.95
SF3B3-212ENST00000568539 NRDE2Q9H7Z3 1164 aa9.12□□□□□ -0.95
SF3B3-212ENST00000568539 GOLGA2P5Q9HBQ8 144 aa9.12□□□□□ -0.95
SF3B3-212ENST00000568539 IFNKQ9P0W0 207 aa9.12□□□□□ -0.95
SF3B3-212ENST00000568539 HCSTQ9UBK5 93 aa9.12□□□□□ -0.95
SF3B3-212ENST00000568539 ITGA11Q9UKX5 1188 aa9.12□□□□□ -0.95
SF3B3-212ENST00000568539 INSL6Q9Y581 213 aa9.12□□□□□ -0.95
SF3B3-212ENST00000568539 GTPBP10A4D1E9 387 aaKnown RBP9.11□□□□□ -0.95
SF3B3-212ENST00000568539 CASTOR2A6NHX0 329 aa9.11□□□□□ -0.95
SF3B3-212ENST00000568539 GRXCR1A8MXD5 290 aa9.11□□□□□ -0.95
SF3B3-212ENST00000568539 PES1O00541 588 aaKnown RBP9.11□□□□□ -0.95
SF3B3-212ENST00000568539 PIRO00625 290 aa9.11□□□□□ -0.95
SF3B3-212ENST00000568539 PPEF2O14830 753 aa9.11□□□□□ -0.95
SF3B3-212ENST00000568539 MAP3K7O43318 606 aa9.11□□□□□ -0.95
SF3B3-212ENST00000568539 PHACTR2O75167 634 aa9.11□□□□□ -0.95
SF3B3-212ENST00000568539 HLA-DRAP01903 254 aa9.11□□□□□ -0.95
SF3B3-212ENST00000568539 LINC00271P0C7V0 271 aa9.11□□□□□ -0.95
SF3B3-212ENST00000568539 POLR2BP30876 1174 aaKnown RBP9.11□□□□□ -0.95
SF3B3-212ENST00000568539 RPL9P32969 192 aaKnown RBP9.11□□□□□ -0.95
SF3B3-212ENST00000568539 CLCNKBP51801 687 aa9.11□□□□□ -0.95
SF3B3-212ENST00000568539 UBASH3AP57075 661 aa9.11□□□□□ -0.95
SF3B3-212ENST00000568539 RBP5P82980 135 aa9.11□□□□□ -0.95
SF3B3-212ENST00000568539 NCOA4Q13772 614 aa9.11□□□□□ -0.95
SF3B3-212ENST00000568539 BTG3Q14201 252 aaPredicted RBP9.11□□□□□ -0.95
SF3B3-212ENST00000568539 NR1I3Q14994 352 aa9.11□□□□□ -0.95
SF3B3-212ENST00000568539 UPP1Q16831 310 aa9.11□□□□□ -0.95
SF3B3-212ENST00000568539 TSR1Q2NL82 804 aaKnown RBP9.11□□□□□ -0.95
SF3B3-212ENST00000568539 FILIP1LQ4L180 1135 aa9.11□□□□□ -0.95
SF3B3-212ENST00000568539 EPC2Q52LR7 807 aa9.11□□□□□ -0.95
SF3B3-212ENST00000568539 FKBP15Q5T1M5 1219 aa9.11□□□□□ -0.95
SF3B3-212ENST00000568539 C9orf57Q5W0N0 161 aa9.11□□□□□ -0.95
SF3B3-212ENST00000568539 LRRC52Q8N7C0 313 aa9.11□□□□□ -0.95
SF3B3-212ENST00000568539 FBXL13Q8NEE6 735 aa9.11□□□□□ -0.95
SF3B3-212ENST00000568539 LMO3Q8TAP4 145 aa9.11□□□□□ -0.95
SF3B3-212ENST00000568539 SEMA4DQ92854 862 aa9.11□□□□□ -0.95
SF3B3-212ENST00000568539 UROC1Q96N76 676 aa9.11□□□□□ -0.95
SF3B3-212ENST00000568539 FAM193BQ96PV7 902 aaPredicted RBP9.11□□□□□ -0.95
SF3B3-212ENST00000568539 PAAF1Q9BRP4 392 aa9.11□□□□□ -0.95
SF3B3-212ENST00000568539 TMUB1Q9BVT8 246 aa9.11□□□□□ -0.95
SF3B3-212ENST00000568539 FAM117AQ9C073 453 aa9.11□□□□□ -0.95
SF3B3-212ENST00000568539 XPO4Q9C0E2 1151 aaKnown RBP9.11□□□□□ -0.95
SF3B3-212ENST00000568539 XYLT2Q9H1B5 865 aa9.11□□□□□ -0.95
SF3B3-212ENST00000568539 GRPEL1Q9HAV7 217 aa9.11□□□□□ -0.95
SF3B3-212ENST00000568539 RAB20Q9NX57 234 aa9.11□□□□□ -0.95
SF3B3-212ENST00000568539 CACNG4Q9UBN1 327 aa9.11□□□□□ -0.95
SF3B3-212ENST00000568539 DNAJB4Q9UDY4 337 aa9.11□□□□□ -0.95
SF3B3-212ENST00000568539 AGAP1Q9UPQ3 857 aa9.11□□□□□ -0.95
SF3B3-212ENST00000568539 MRPL42Q9Y6G3 142 aaKnown RBP9.11□□□□□ -0.95
SF3B3-212ENST00000568539 CDH23Q9H251 3354 aa9.1□□□□□ -0.95
SF3B3-212ENST00000568539 LCHNA4D1U4 455 aa9.1□□□□□ -0.95
SF3B3-212ENST00000568539 PODXLO00592 558 aa9.1□□□□□ -0.95
SF3B3-212ENST00000568539 TEX33O43247 280 aa9.1□□□□□ -0.95
SF3B3-212ENST00000568539 TLL1O43897 1013 aa9.1□□□□□ -0.95
SF3B3-212ENST00000568539 ZC3H11AO75152 810 aaKnown RBP eCLIP9.1□□□□□ -0.95
SF3B3-212ENST00000568539 LRRN2O75325 713 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms