RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 SLC2A13Q96QE2 648 aa3.87□□□□□ -1.79
VPS35-207ENST00000568191 MYOCQ99972 504 aa3.87□□□□□ -1.79
VPS35-207ENST00000568191 UNKLQ9H9P5 680 aaKnown RBP3.87□□□□□ -1.79
VPS35-207ENST00000568191 GNL3LQ9NVN8 582 aaKnown RBP3.87□□□□□ -1.79
VPS35-207ENST00000568191 KCTD5Q9NXV2 234 aa3.87□□□□□ -1.79
VPS35-207ENST00000568191 SIK3Q9Y2K2 1263 aa3.87□□□□□ -1.79
VPS35-207ENST00000568191 XPOTO43592 962 aaKnown RBP3.86□□□□□ -1.79
VPS35-207ENST00000568191 SGTAO43765 313 aa3.86□□□□□ -1.79
VPS35-207ENST00000568191 NDUFS2O75306 463 aa3.86□□□□□ -1.79
VPS35-207ENST00000568191 AMY1AP04745 511 aa3.86□□□□□ -1.79
VPS35-207ENST00000568191 TYRP1P17643 537 aa3.86□□□□□ -1.79
VPS35-207ENST00000568191 CCND1P24385 295 aa3.86□□□□□ -1.79
VPS35-207ENST00000568191 LMO1P25800 156 aa3.86□□□□□ -1.79
VPS35-207ENST00000568191 PLA2G5P39877 138 aa3.86□□□□□ -1.79
VPS35-207ENST00000568191 CACNA2D1P54289 1103 aa3.86□□□□□ -1.79
VPS35-207ENST00000568191 NOMO3P69849 1222 aa3.86□□□□□ -1.79
VPS35-207ENST00000568191 NBPF8Q3BBV2 869 aa3.86□□□□□ -1.79
VPS35-207ENST00000568191 NOMO2Q5JPE7 1267 aa3.86□□□□□ -1.79
VPS35-207ENST00000568191 EGFLAMQ63HQ2 1017 aa3.86□□□□□ -1.79
VPS35-207ENST00000568191 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP3.86□□□□□ -1.79
VPS35-207ENST00000568191 LNX2Q8N448 690 aa3.86□□□□□ -1.79
VPS35-207ENST00000568191 BBC3Q96PG8 261 aaPredicted RBP3.86□□□□□ -1.79
VPS35-207ENST00000568191 PUS7Q96PZ0 661 aaKnown RBP3.86□□□□□ -1.79
VPS35-207ENST00000568191 INTS13Q9NVM9 706 aa3.86□□□□□ -1.79
VPS35-207ENST00000568191 NIPSNAP3AQ9UFN0 247 aaPredicted RBP3.86□□□□□ -1.79
VPS35-207ENST00000568191 PRAMEF33A0A0G2JMD5 474 aa3.85□□□□□ -1.79
VPS35-207ENST00000568191 A0A1W2PS29 197 aa3.85□□□□□ -1.79
VPS35-207ENST00000568191 SHTN1A0MZ66 631 aa3.85□□□□□ -1.79
VPS35-207ENST00000568191 GRM6O15303 877 aa3.85□□□□□ -1.79
VPS35-207ENST00000568191 YY2O15391 372 aa3.85□□□□□ -1.79
VPS35-207ENST00000568191 PRAMEF10O60809 474 aa3.85□□□□□ -1.79
VPS35-207ENST00000568191 AGFG2O95081 481 aa3.85□□□□□ -1.79
VPS35-207ENST00000568191 ANXA1P04083 346 aa3.85□□□□□ -1.79
VPS35-207ENST00000568191 SMARCA1P28370 1054 aa3.85□□□□□ -1.79
VPS35-207ENST00000568191 FOLR3P41439 243 aa3.85□□□□□ -1.79
VPS35-207ENST00000568191 CLK3P49761 638 aaKnown RBP3.85□□□□□ -1.79
VPS35-207ENST00000568191 SIM1P81133 766 aaPredicted RBP3.85□□□□□ -1.79
VPS35-207ENST00000568191 ATP8B2P98198 1209 aa3.85□□□□□ -1.79
VPS35-207ENST00000568191 ITKQ08881 620 aa3.85□□□□□ -1.79
VPS35-207ENST00000568191 UTP14CQ5TAP6 766 aaKnown RBP3.85□□□□□ -1.79
VPS35-207ENST00000568191 KAZNQ674X7 775 aa3.85□□□□□ -1.79
VPS35-207ENST00000568191 TTC7BQ86TV6 843 aa3.85□□□□□ -1.79
VPS35-207ENST00000568191 PNMA8AQ86V59 439 aaPredicted RBP3.85□□□□□ -1.79
VPS35-207ENST00000568191 ARHGEF25Q86VW2 580 aa3.85□□□□□ -1.79
VPS35-207ENST00000568191 DDX42Q86XP3 938 aaKnown RBP eCLIP3.85□□□□□ -1.79
VPS35-207ENST00000568191 ZGPATQ8N5A5 531 aaKnown RBP3.85□□□□□ -1.79
VPS35-207ENST00000568191 C1orf162Q8NEQ5 155 aaPredicted RBP3.85□□□□□ -1.79
VPS35-207ENST00000568191 IL17RDQ8NFM7 739 aa3.85□□□□□ -1.79
VPS35-207ENST00000568191 FBXL20Q96IG2 436 aa3.85□□□□□ -1.79
VPS35-207ENST00000568191 FAXDC2Q96IV6 333 aa3.85□□□□□ -1.79
VPS35-207ENST00000568191 JKAMPQ9P055 326 aa3.85□□□□□ -1.79
VPS35-207ENST00000568191 CALCOCO1Q9P1Z2 691 aa3.85□□□□□ -1.79
VPS35-207ENST00000568191 ATP8A1Q9Y2Q0 1164 aa3.85□□□□□ -1.79
VPS35-207ENST00000568191 PCDHA13Q9Y5I0 950 aa3.85□□□□□ -1.79
VPS35-207ENST00000568191 ALG1L2C9J202 215 aa3.84□□□□□ -1.79
VPS35-207ENST00000568191 MPPED1O15442 326 aa3.84□□□□□ -1.79
VPS35-207ENST00000568191 PROP1O75360 226 aa3.84□□□□□ -1.79
VPS35-207ENST00000568191 PRSS23O95084 383 aa3.84□□□□□ -1.79
VPS35-207ENST00000568191 IGLV2-14P01704 120 aa3.84□□□□□ -1.79
VPS35-207ENST00000568191 GNAI3P08754 354 aa3.84□□□□□ -1.79
VPS35-207ENST00000568191 SRGNP10124 158 aa3.84□□□□□ -1.79
VPS35-207ENST00000568191 MYBL2P10244 700 aa3.84□□□□□ -1.79
VPS35-207ENST00000568191 KCNA2P16389 499 aa3.84□□□□□ -1.79
VPS35-207ENST00000568191 GUCY2FP51841 1108 aa3.84□□□□□ -1.79
VPS35-207ENST00000568191 SOX10P56693 466 aa3.84□□□□□ -1.79
VPS35-207ENST00000568191 GNAI1P63096 354 aa3.84□□□□□ -1.79
VPS35-207ENST00000568191 SCAPQ12770 1279 aa3.84□□□□□ -1.79
VPS35-207ENST00000568191 GEN1Q17RS7 908 aa3.84□□□□□ -1.79
VPS35-207ENST00000568191 FAM153CQ494X1 144 aa3.84□□□□□ -1.79
VPS35-207ENST00000568191 SYDE2Q5VT97 1194 aa3.84□□□□□ -1.79
VPS35-207ENST00000568191 EFCAB2Q5VUJ9 269 aa3.84□□□□□ -1.79
VPS35-207ENST00000568191 OR2I1PQ8NGU4 316 aa3.84□□□□□ -1.79
VPS35-207ENST00000568191 SSH3Q8TE77 659 aa3.84□□□□□ -1.79
VPS35-207ENST00000568191 ZNF384Q8TF68 577 aa3.84□□□□□ -1.79
VPS35-207ENST00000568191 NACC2Q96BF6 587 aa3.84□□□□□ -1.79
VPS35-207ENST00000568191 PGBD1Q96JS3 809 aa3.84□□□□□ -1.79
VPS35-207ENST00000568191 LRFN3Q9BTN0 628 aa3.84□□□□□ -1.79
VPS35-207ENST00000568191 SIK2Q9H0K1 926 aa3.84□□□□□ -1.79
VPS35-207ENST00000568191 R3HDMLQ9H3Y0 253 aa3.84□□□□□ -1.79
VPS35-207ENST00000568191 CDYLQ9Y232 598 aa3.84□□□□□ -1.79
VPS35-207ENST00000568191 CFAP20Q9Y6A4 193 aaKnown RBP3.84□□□□□ -1.79
VPS35-207ENST00000568191 COL11A2P13942 1736 aaPredicted RBP3.84□□□□□ -1.8
VPS35-207ENST00000568191 CCDC195A0A1B0GUA6 201 aa3.83□□□□□ -1.8
VPS35-207ENST00000568191 WNT10BO00744 389 aa3.83□□□□□ -1.8
VPS35-207ENST00000568191 TOR1BO14657 336 aa3.83□□□□□ -1.8
VPS35-207ENST00000568191 SLC43A1O75387 559 aa3.83□□□□□ -1.8
VPS35-207ENST00000568191 ARIH2O95376 493 aa3.83□□□□□ -1.8
VPS35-207ENST00000568191 FCER1AP12319 257 aa3.83□□□□□ -1.8
VPS35-207ENST00000568191 GPD1P21695 349 aa3.83□□□□□ -1.8
VPS35-207ENST00000568191 CYP2C19P33261 490 aa3.83□□□□□ -1.8
VPS35-207ENST00000568191 KRT85P78386 507 aa3.83□□□□□ -1.8
VPS35-207ENST00000568191 KIF23Q02241 960 aaPredicted RBP3.83□□□□□ -1.8
VPS35-207ENST00000568191 SF3B3Q15393 1217 aaKnown RBP3.83□□□□□ -1.8
VPS35-207ENST00000568191 THEMIS2Q5TEJ8 643 aa3.83□□□□□ -1.8
VPS35-207ENST00000568191 ZKSCAN2Q63HK3 967 aa3.83□□□□□ -1.8
VPS35-207ENST00000568191 B3GALNT2Q8NCR0 500 aa3.83□□□□□ -1.8
VPS35-207ENST00000568191 TOR1AIP2Q8NFQ8 470 aa3.83□□□□□ -1.8
VPS35-207ENST00000568191 SNX19Q92543 992 aa3.83□□□□□ -1.8
VPS35-207ENST00000568191 JADE3Q92613 823 aa3.83□□□□□ -1.8
VPS35-207ENST00000568191 TMEM125Q96AQ2 219 aa3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms