RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 TRIM11Q96F44 468 aa21.65■■□□□ 1.06
CLN3-230ENST00000568076 PCYOX1Q9UHG3 505 aa21.65■■□□□ 1.06
CLN3-230ENST00000568076 NFS1Q9Y697 457 aa21.65■■□□□ 1.06
CLN3-230ENST00000568076 ASB14A6NK59 587 aa21.64■■□□□ 1.05
CLN3-230ENST00000568076 HBP1O60381 514 aa21.64■■□□□ 1.05
CLN3-230ENST00000568076 HOXC6P09630 235 aa21.64■■□□□ 1.05
CLN3-230ENST00000568076 HNRNPH2P55795 449 aaKnown RBP21.64■■□□□ 1.05
CLN3-230ENST00000568076 MYL6P60660 151 aa21.64■■□□□ 1.05
CLN3-230ENST00000568076 TMC3Q7Z5M5 1100 aa21.64■■□□□ 1.05
CLN3-230ENST00000568076 SH2D3CQ8N5H7 860 aa21.64■■□□□ 1.05
CLN3-230ENST00000568076 C11orf70Q9BRQ4 267 aa21.64■■□□□ 1.05
CLN3-230ENST00000568076 MINDY3Q9H8M7 445 aa21.64■■□□□ 1.05
CLN3-230ENST00000568076 LOC102724159A0A0B4J2E5 919 aa21.63■■□□□ 1.05
CLN3-230ENST00000568076 ACKR2O00590 384 aa21.63■■□□□ 1.05
CLN3-230ENST00000568076 RARAP10276 462 aa21.63■■□□□ 1.05
CLN3-230ENST00000568076 ARHGAP1Q07960 439 aa21.63■■□□□ 1.05
CLN3-230ENST00000568076 PWP2Q15269 919 aaKnown RBP21.63■■□□□ 1.05
CLN3-230ENST00000568076 ZSCAN26Q16670 478 aa21.63■■□□□ 1.05
CLN3-230ENST00000568076 CYP1B1Q16678 543 aa21.63■■□□□ 1.05
CLN3-230ENST00000568076 ATF7IP2Q5U623 682 aa21.63■■□□□ 1.05
CLN3-230ENST00000568076 KCTD16Q68DU8 428 aa21.63■■□□□ 1.05
CLN3-230ENST00000568076 MPZL3Q6UWV2 235 aa21.63■■□□□ 1.05
CLN3-230ENST00000568076 TRIM72Q6ZMU5 477 aa21.63■■□□□ 1.05
CLN3-230ENST00000568076 CDR2LQ86X02 465 aaPredicted RBP21.63■■□□□ 1.05
CLN3-230ENST00000568076 CEP120Q8N960 986 aa21.63■■□□□ 1.05
CLN3-230ENST00000568076 ZDHHC18Q9NUE0 388 aa21.63■■□□□ 1.05
CLN3-230ENST00000568076 INO80B-WBP1J3KQ70 363 aa21.63■■□□□ 1.05
CLN3-230ENST00000568076 THAP12O43422 761 aa21.63■■□□□ 1.05
CLN3-230ENST00000568076 C22orf31O95567 290 aa21.63■■□□□ 1.05
CLN3-230ENST00000568076 IQCF3P0C7M6 154 aa21.63■■□□□ 1.05
CLN3-230ENST00000568076 PTP4A2Q12974 167 aa21.63■■□□□ 1.05
CLN3-230ENST00000568076 EEF1DP3Q658K8 133 aa21.63■■□□□ 1.05
CLN3-230ENST00000568076 TAPT1Q6NXT6 567 aa21.63■■□□□ 1.05
CLN3-230ENST00000568076 EFCAB13Q8IY85 973 aa21.63■■□□□ 1.05
CLN3-230ENST00000568076 THNSL1Q8IYQ7 743 aa21.63■■□□□ 1.05
CLN3-230ENST00000568076 SLC10A4Q96EP9 437 aa21.63■■□□□ 1.05
CLN3-230ENST00000568076 JPH2Q9BR39 696 aaPredicted RBP21.63■■□□□ 1.05
CLN3-230ENST00000568076 IMPG2Q9BZV3 1241 aa21.63■■□□□ 1.05
CLN3-230ENST00000568076 INO80BQ9C086 356 aaPredicted RBP21.63■■□□□ 1.05
CLN3-230ENST00000568076 ADAM22Q9P0K1 906 aa21.63■■□□□ 1.05
CLN3-230ENST00000568076 SHOX2O60902 331 aaPredicted RBP21.62■■□□□ 1.05
CLN3-230ENST00000568076 MBTD1Q05BQ5 628 aa21.62■■□□□ 1.05
CLN3-230ENST00000568076 LLGL1Q15334 1064 aa21.62■■□□□ 1.05
CLN3-230ENST00000568076 DUOXA2Q1HG44 320 aa21.62■■□□□ 1.05
CLN3-230ENST00000568076 ZNF792Q3KQV3 632 aa21.62■■□□□ 1.05
CLN3-230ENST00000568076 DAB2IPQ5VWQ8 1189 aa21.62■■□□□ 1.05
CLN3-230ENST00000568076 CCDC137Q6PK04 289 aaKnown RBP21.62■■□□□ 1.05
CLN3-230ENST00000568076 MAMDC4Q6UXC1 1216 aa21.62■■□□□ 1.05
CLN3-230ENST00000568076 LRIG3Q6UXM1 1119 aa21.62■■□□□ 1.05
CLN3-230ENST00000568076 PHF13Q86YI8 300 aaPredicted RBP21.62■■□□□ 1.05
CLN3-230ENST00000568076 OR2W6PQ8NHA6 318 aa21.62■■□□□ 1.05
CLN3-230ENST00000568076 ZNF606Q8WXB4 792 aa21.62■■□□□ 1.05
CLN3-230ENST00000568076 SNX24Q9Y343 169 aa21.62■■□□□ 1.05
CLN3-230ENST00000568076 MYO1FO00160 1098 aa21.61■■□□□ 1.05
CLN3-230ENST00000568076 OSTNP61366 133 aa21.61■■□□□ 1.05
CLN3-230ENST00000568076 MAMLD1Q13495 774 aa21.61■■□□□ 1.05
CLN3-230ENST00000568076 TFDP1Q14186 410 aa21.61■■□□□ 1.05
CLN3-230ENST00000568076 ZNF568Q3ZCX4 644 aa21.61■■□□□ 1.05
CLN3-230ENST00000568076 ZDHHC24Q6UX98 284 aa21.61■■□□□ 1.05
CLN3-230ENST00000568076 MMS22LQ6ZRQ5 1243 aa21.61■■□□□ 1.05
CLN3-230ENST00000568076 GPRC5AQ8NFJ5 357 aa21.61■■□□□ 1.05
CLN3-230ENST00000568076 TXLNGYQ9BZA5 131 aa21.61■■□□□ 1.05
CLN3-230ENST00000568076 ERAP1Q9NZ08 941 aa21.61■■□□□ 1.05
CLN3-230ENST00000568076 FSCN2O14926 492 aa21.61■■□□□ 1.05
CLN3-230ENST00000568076 RPS6KA5O75582 802 aa21.61■■□□□ 1.05
CLN3-230ENST00000568076 COILP38432 576 aaPredicted RBP21.61■■□□□ 1.05
CLN3-230ENST00000568076 SLC1A1P43005 524 aa21.61■■□□□ 1.05
CLN3-230ENST00000568076 DRG2P55039 364 aaKnown RBP21.61■■□□□ 1.05
CLN3-230ENST00000568076 CEP85LQ5SZL2 805 aa21.61■■□□□ 1.05
CLN3-230ENST00000568076 LRRC31Q6UY01 552 aa21.61■■□□□ 1.05
CLN3-230ENST00000568076 TMEM192Q8IY95 271 aa21.61■■□□□ 1.05
CLN3-230ENST00000568076 FMO2Q99518 471 aa21.61■■□□□ 1.05
CLN3-230ENST00000568076 GRHL1Q9NZI5 618 aa21.61■■□□□ 1.05
CLN3-230ENST00000568076 PNMA3Q9UL41 463 aa21.61■■□□□ 1.05
CLN3-230ENST00000568076 LGALS2P05162 132 aa21.6■■□□□ 1.05
CLN3-230ENST00000568076 CD58P19256 250 aa21.6■■□□□ 1.05
CLN3-230ENST00000568076 ADORA2AP29274 412 aa21.6■■□□□ 1.05
CLN3-230ENST00000568076 IGBP1P78318 339 aa21.6■■□□□ 1.05
CLN3-230ENST00000568076 TFAMQ00059 246 aaKnown RBP21.6■■□□□ 1.05
CLN3-230ENST00000568076 DHX9Q08211 1270 aaKnown RBP21.6■■□□□ 1.05
CLN3-230ENST00000568076 SURF1Q15526 300 aa21.6■■□□□ 1.05
CLN3-230ENST00000568076 DNAJC21Q5F1R6 531 aaKnown RBP21.6■■□□□ 1.05
CLN3-230ENST00000568076 PLEKHA7Q6IQ23 1121 aa21.6■■□□□ 1.05
CLN3-230ENST00000568076 LEKR1Q6ZMV7 388 aa21.6■■□□□ 1.05
CLN3-230ENST00000568076 C12orf50Q8NA57 414 aaPredicted RBP21.6■■□□□ 1.05
CLN3-230ENST00000568076 UBLCP1Q8WVY7 318 aaPredicted RBP21.6■■□□□ 1.05
CLN3-230ENST00000568076 DDX27Q96GQ7 796 aaKnown RBP21.6■■□□□ 1.05
CLN3-230ENST00000568076 VCPIP1Q96JH7 1222 aa21.6■■□□□ 1.05
CLN3-230ENST00000568076 HERPUD2Q9BSE4 406 aa21.6■■□□□ 1.05
CLN3-230ENST00000568076 NIF3L1Q9GZT8 377 aa21.6■■□□□ 1.05
CLN3-230ENST00000568076 RASAL2Q9UJF2 1139 aa21.6■■□□□ 1.05
CLN3-230ENST00000568076 MTUS1Q9ULD2 1270 aa21.6■■□□□ 1.05
CLN3-230ENST00000568076 GLTPD2A6NH11 291 aa21.59■■□□□ 1.05
CLN3-230ENST00000568076 O00370 1275 aa21.59■■□□□ 1.05
CLN3-230ENST00000568076 PROSCO94903 275 aa21.59■■□□□ 1.05
CLN3-230ENST00000568076 INSRRP14616 1297 aa21.59■■□□□ 1.05
CLN3-230ENST00000568076 KCNJ1P48048 391 aa21.59■■□□□ 1.05
CLN3-230ENST00000568076 C1QBPQ07021 282 aaKnown RBP21.59■■□□□ 1.05
CLN3-230ENST00000568076 SGSM1Q2NKQ1 1148 aa21.59■■□□□ 1.05
CLN3-230ENST00000568076 LIN9Q5TKA1 542 aa21.59■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms