RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 USP15Q9Y4E8 981 aaPredicted RBP14.57□□□□□ -0.08
CLK3-218ENST00000566926 NUB1Q9Y5A7 615 aa14.57□□□□□ -0.08
CLK3-218ENST00000566926 BDP1A6H8Y1 2624 aa14.57□□□□□ -0.08
CLK3-218ENST00000566926 VCANP13611 3396 aa14.56□□□□□ -0.08
CLK3-218ENST00000566926 SMTNL1A8MU46 457 aa14.56□□□□□ -0.08
CLK3-218ENST00000566926 BECN2A8MW95 431 aa14.56□□□□□ -0.08
CLK3-218ENST00000566926 LACTBL1A8MY62 500 aa14.56□□□□□ -0.08
CLK3-218ENST00000566926 EIF3DO15371 548 aaKnown RBP eCLIP14.56□□□□□ -0.08
CLK3-218ENST00000566926 TEX28O15482 410 aa14.56□□□□□ -0.08
CLK3-218ENST00000566926 FAM189A1O60320 539 aa14.56□□□□□ -0.08
CLK3-218ENST00000566926 GLUD1P00367 558 aa14.56□□□□□ -0.08
CLK3-218ENST00000566926 MYBP10242 640 aa14.56□□□□□ -0.08
CLK3-218ENST00000566926 EPCAMP16422 314 aa14.56□□□□□ -0.08
CLK3-218ENST00000566926 PAX3P23760 479 aa14.56□□□□□ -0.08
CLK3-218ENST00000566926 ERCC5P28715 1186 aaPredicted RBP14.56□□□□□ -0.08
CLK3-218ENST00000566926 SSTR3P32745 418 aaPredicted RBP14.56□□□□□ -0.08
CLK3-218ENST00000566926 TPM4P67936 248 aa14.56□□□□□ -0.08
CLK3-218ENST00000566926 SOX4Q06945 474 aaPredicted RBP14.56□□□□□ -0.08
CLK3-218ENST00000566926 STIM1Q13586 685 aa14.56□□□□□ -0.08
CLK3-218ENST00000566926 ENOX2Q16206 610 aaKnown RBP14.56□□□□□ -0.08
CLK3-218ENST00000566926 DPCR1Q3MIW9 517 aa14.56□□□□□ -0.08
CLK3-218ENST00000566926 COBLL1Q53SF7 1204 aa14.56□□□□□ -0.08
CLK3-218ENST00000566926 FAM26FQ5R3K3 315 aa14.56□□□□□ -0.08
CLK3-218ENST00000566926 SYCE2Q6PIF2 218 aa14.56□□□□□ -0.08
CLK3-218ENST00000566926 GJD3Q8N144 294 aa14.56□□□□□ -0.08
CLK3-218ENST00000566926 BEST2Q8NFU1 509 aa14.56□□□□□ -0.08
CLK3-218ENST00000566926 FAM212AQ96EL1 285 aa14.56□□□□□ -0.08
CLK3-218ENST00000566926 RIPOR3Q96MK2 946 aa14.56□□□□□ -0.08
CLK3-218ENST00000566926 NECAB3Q96P71 396 aaPredicted RBP14.56□□□□□ -0.08
CLK3-218ENST00000566926 PHF7Q9BWX1 381 aaPredicted RBP14.56□□□□□ -0.08
CLK3-218ENST00000566926 DNAJC25Q9H1X3 360 aa14.56□□□□□ -0.08
CLK3-218ENST00000566926 S1PR5Q9H228 398 aa14.56□□□□□ -0.08
CLK3-218ENST00000566926 BLZF1Q9H2G9 400 aa14.56□□□□□ -0.08
CLK3-218ENST00000566926 ADAM7Q9H2U9 754 aa14.56□□□□□ -0.08
CLK3-218ENST00000566926 SFXN1Q9H9B4 322 aa14.56□□□□□ -0.08
CLK3-218ENST00000566926 DERAQ9Y315 318 aa14.56□□□□□ -0.08
CLK3-218ENST00000566926 C2orf16Q68DN1 1984 aa14.56□□□□□ -0.08
CLK3-218ENST00000566926 MYO10Q9HD67 2058 aa14.55□□□□□ -0.08
CLK3-218ENST00000566926 GOLGA6L19H0YKK7 550 aa14.55□□□□□ -0.08
CLK3-218ENST00000566926 BIN1O00499 593 aa14.55□□□□□ -0.08
CLK3-218ENST00000566926 IKBKBO14920 756 aa14.55□□□□□ -0.08
CLK3-218ENST00000566926 PRPF6O94906 941 aaKnown RBP14.55□□□□□ -0.08
CLK3-218ENST00000566926 KIF20AO95235 890 aa14.55□□□□□ -0.08
CLK3-218ENST00000566926 IL18RAPO95256 599 aa14.55□□□□□ -0.08
CLK3-218ENST00000566926 FGFR3P22607 806 aa14.55□□□□□ -0.08
CLK3-218ENST00000566926 LRPAP1P30533 357 aa14.55□□□□□ -0.08
CLK3-218ENST00000566926 MTHFRP42898 656 aa14.55□□□□□ -0.08
CLK3-218ENST00000566926 ACOT2P49753 483 aa14.55□□□□□ -0.08
CLK3-218ENST00000566926 CASP5P51878 434 aa14.55□□□□□ -0.08
CLK3-218ENST00000566926 CBX2Q14781 532 aaPredicted RBP14.55□□□□□ -0.08
CLK3-218ENST00000566926 ZBTB6Q15916 424 aa14.55□□□□□ -0.08
CLK3-218ENST00000566926 PSMD5Q16401 504 aa14.55□□□□□ -0.08
CLK3-218ENST00000566926 RTP2Q5QGT7 225 aa14.55□□□□□ -0.08
CLK3-218ENST00000566926 CYP26C1Q6V0L0 522 aa14.55□□□□□ -0.08
CLK3-218ENST00000566926 ANKS3Q6ZW76 656 aa14.55□□□□□ -0.08
CLK3-218ENST00000566926 NT5DC4Q86YG4 428 aa14.55□□□□□ -0.08
CLK3-218ENST00000566926 SUSD6Q92537 303 aa14.55□□□□□ -0.08
CLK3-218ENST00000566926 ERCC4Q92889 916 aaPredicted RBP14.55□□□□□ -0.08
CLK3-218ENST00000566926 C18orf25Q96B23 403 aaPredicted RBP14.55□□□□□ -0.08
CLK3-218ENST00000566926 RBSNQ9H1K0 784 aa14.55□□□□□ -0.08
CLK3-218ENST00000566926 PLEKHA4Q9H4M7 779 aa14.55□□□□□ -0.08
CLK3-218ENST00000566926 UBE4BO95155 1302 aa14.55□□□□□ -0.08
CLK3-218ENST00000566926 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.54□□□□□ -0.08
CLK3-218ENST00000566926 SYN3O14994 580 aa14.54□□□□□ -0.08
CLK3-218ENST00000566926 MEFVO15553 781 aaPredicted RBP14.54□□□□□ -0.08
CLK3-218ENST00000566926 ADSSP30520 456 aa14.54□□□□□ -0.08
CLK3-218ENST00000566926 SNRPFP62306 86 aaKnown RBP14.54□□□□□ -0.08
CLK3-218ENST00000566926 ZP2Q05996 745 aa14.54□□□□□ -0.08
CLK3-218ENST00000566926 KCNA1Q09470 495 aa14.54□□□□□ -0.08
CLK3-218ENST00000566926 TMEM132DQ14C87 1099 aa14.54□□□□□ -0.08
CLK3-218ENST00000566926 KMT5BQ4FZB7 885 aa14.54□□□□□ -0.08
CLK3-218ENST00000566926 ATAT1Q5SQI0 421 aa14.54□□□□□ -0.08
CLK3-218ENST00000566926 ZBTB41Q5SVQ8 909 aa14.54□□□□□ -0.08
CLK3-218ENST00000566926 RARS2Q5T160 578 aaKnown RBP14.54□□□□□ -0.08
CLK3-218ENST00000566926 ARMCX5Q6P1M9 558 aa14.54□□□□□ -0.08
CLK3-218ENST00000566926 APPL2Q8NEU8 664 aa14.54□□□□□ -0.08
CLK3-218ENST00000566926 LNX1Q8TBB1 728 aaPredicted RBP14.54□□□□□ -0.08
CLK3-218ENST00000566926 ZNF507Q8TCN5 953 aa14.54□□□□□ -0.08
CLK3-218ENST00000566926 B3GALT6Q96L58 329 aa14.54□□□□□ -0.08
CLK3-218ENST00000566926 C2CD2Q9Y426 696 aa14.54□□□□□ -0.08
CLK3-218ENST00000566926 SCN1AP35498 2009 aa14.54□□□□□ -0.08
CLK3-218ENST00000566926 ARHGEF37A1IGU5 675 aa14.53□□□□□ -0.08
CLK3-218ENST00000566926 C19orf67A6NJJ6 358 aa14.53□□□□□ -0.08
CLK3-218ENST00000566926 TISP43B9A030 160 aa14.53□□□□□ -0.08
CLK3-218ENST00000566926 H7C4K7 107 aa14.53□□□□□ -0.08
CLK3-218ENST00000566926 KLRC4O43908 158 aa14.53□□□□□ -0.08
CLK3-218ENST00000566926 BRCC3P46736 316 aa14.53□□□□□ -0.08
CLK3-218ENST00000566926 MYL5Q02045 173 aa14.53□□□□□ -0.08
CLK3-218ENST00000566926 SPAG1Q07617 926 aa14.53□□□□□ -0.08
CLK3-218ENST00000566926 SPATA1Q5VX52 437 aa14.53□□□□□ -0.08
CLK3-218ENST00000566926 JADE1Q6IE81 842 aa14.53□□□□□ -0.08
CLK3-218ENST00000566926 FOXR2Q6PJQ5 311 aa14.53□□□□□ -0.08
CLK3-218ENST00000566926 PRSS55Q6UWB4 352 aaPredicted RBP14.53□□□□□ -0.08
CLK3-218ENST00000566926 CD300LGQ6UXG3 332 aa14.53□□□□□ -0.08
CLK3-218ENST00000566926 C15orf39Q6ZRI6 1047 aa14.53□□□□□ -0.08
CLK3-218ENST00000566926 PALB2Q86YC2 1186 aa14.53□□□□□ -0.08
CLK3-218ENST00000566926 RNF214Q8ND24 703 aa14.53□□□□□ -0.08
CLK3-218ENST00000566926 C3orf58Q8NDZ4 430 aa14.53□□□□□ -0.08
CLK3-218ENST00000566926 CMASQ8NFW8 434 aaPredicted RBP14.53□□□□□ -0.08
CLK3-218ENST00000566926 SUSD3Q96L08 255 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms