RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 XXYLT1Q8NBI6 393 aa14.12□□□□□ -0.15
VPS4A-204ENST00000566354 DNERQ8NFT8 737 aa14.12□□□□□ -0.15
VPS4A-204ENST00000566354 GIMAP7Q8NHV1 300 aa14.12□□□□□ -0.15
VPS4A-204ENST00000566354 EPS8L1Q8TE68 723 aa14.12□□□□□ -0.15
VPS4A-204ENST00000566354 ACCSQ96QU6 501 aa14.12□□□□□ -0.15
VPS4A-204ENST00000566354 PCIF1Q9H4Z3 704 aa14.12□□□□□ -0.15
VPS4A-204ENST00000566354 LRRC19Q9H756 370 aa14.12□□□□□ -0.15
VPS4A-204ENST00000566354 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.12□□□□□ -0.154e-7■■■■□ 25.6
VPS4A-204ENST00000566354 MORF4L1Q9UBU8 362 aa14.12□□□□□ -0.15
VPS4A-204ENST00000566354 MCM8Q9UJA3 840 aa14.12□□□□□ -0.15
VPS4A-204ENST00000566354 MCM3APO60318 1980 aa14.11□□□□□ -0.15
VPS4A-204ENST00000566354 LOXHD1Q8IVV2 1947 aa14.11□□□□□ -0.15
VPS4A-204ENST00000566354 TCRBV7S2A1N4TA0A589 114 aa14.11□□□□□ -0.15
VPS4A-204ENST00000566354 ECM2O94769 699 aaPredicted RBP14.11□□□□□ -0.15
VPS4A-204ENST00000566354 SGPL1O95470 568 aa14.11□□□□□ -0.15
VPS4A-204ENST00000566354 ECEL1O95672 775 aa14.11□□□□□ -0.15
VPS4A-204ENST00000566354 CYP1A2P05177 515 aa14.11□□□□□ -0.15
VPS4A-204ENST00000566354 RWDD2BP57060 319 aa14.11□□□□□ -0.15
VPS4A-204ENST00000566354 BIRC2Q13490 618 aa14.11□□□□□ -0.15
VPS4A-204ENST00000566354 PPP1R7Q15435 360 aa14.11□□□□□ -0.15
VPS4A-204ENST00000566354 SIX1Q15475 284 aaPredicted RBP14.11□□□□□ -0.15
VPS4A-204ENST00000566354 XRRA1Q6P2D8 792 aa14.11□□□□□ -0.15
VPS4A-204ENST00000566354 NOP9Q86U38 636 aaKnown RBP14.11□□□□□ -0.15
VPS4A-204ENST00000566354 SHCBP1Q8NEM2 672 aa14.11□□□□□ -0.15
VPS4A-204ENST00000566354 UHMK1Q8TAS1 419 aaKnown RBP14.11□□□□□ -0.15
VPS4A-204ENST00000566354 ZNF564Q8TBZ8 553 aaPredicted RBP14.11□□□□□ -0.15
VPS4A-204ENST00000566354 SLCO2A1Q92959 643 aa14.11□□□□□ -0.15
VPS4A-204ENST00000566354 FGD4Q96M96 766 aa14.11□□□□□ -0.15
VPS4A-204ENST00000566354 SCLT1Q96NL6 688 aa14.11□□□□□ -0.15
VPS4A-204ENST00000566354 RIT2Q99578 217 aa14.11□□□□□ -0.15
VPS4A-204ENST00000566354 PLVAPQ9BX97 442 aa14.11□□□□□ -0.15
VPS4A-204ENST00000566354 UVRAGQ9P2Y5 699 aa14.11□□□□□ -0.15
VPS4A-204ENST00000566354 PTPN22Q9Y2R2 807 aa14.11□□□□□ -0.15
VPS4A-204ENST00000566354 CFAP73A6NFT4 308 aa14.1□□□□□ -0.15
VPS4A-204ENST00000566354 DHX15O43143 795 aaKnown RBP14.1□□□□□ -0.15
VPS4A-204ENST00000566354 ZNF568Q3ZCX4 644 aa14.1□□□□□ -0.15
VPS4A-204ENST00000566354 C1orf220Q5T0J3 134 aa14.1□□□□□ -0.15
VPS4A-204ENST00000566354 UBAP2Q5T6F2 1119 aaKnown RBP14.1□□□□□ -0.15
VPS4A-204ENST00000566354 CYP4F22Q6NT55 531 aa14.1□□□□□ -0.15
VPS4A-204ENST00000566354 HIBCHQ6NVY1 386 aaPredicted RBP14.1□□□□□ -0.15
VPS4A-204ENST00000566354 ZNF784Q8NCA9 323 aaPredicted RBP14.1□□□□□ -0.15
VPS4A-204ENST00000566354 NUP85Q9BW27 656 aa14.1□□□□□ -0.15
VPS4A-204ENST00000566354 WHRNQ9P202 907 aa14.1□□□□□ -0.15
VPS4A-204ENST00000566354 CPA4Q9UI42 421 aa14.1□□□□□ -0.15
VPS4A-204ENST00000566354 DBR1Q9UK59 544 aaKnown RBP14.1□□□□□ -0.15
VPS4A-204ENST00000566354 GTF3C4Q9UKN8 822 aa14.1□□□□□ -0.15
VPS4A-204ENST00000566354 DOCK5Q9H7D0 1870 aa14.1□□□□□ -0.15
VPS4A-204ENST00000566354 DNAJC25-GNG10A0A024R161 153 aa14.1□□□□□ -0.15
VPS4A-204ENST00000566354 ANKRD63C9JTQ0 380 aa14.1□□□□□ -0.15
VPS4A-204ENST00000566354 ATP5DP30049 168 aa14.1□□□□□ -0.15
VPS4A-204ENST00000566354 MXI1P50539 228 aa14.1□□□□□ -0.15
VPS4A-204ENST00000566354 SNRPFP62306 86 aaKnown RBP14.1□□□□□ -0.15
VPS4A-204ENST00000566354 CCNA1P78396 465 aa14.1□□□□□ -0.15
VPS4A-204ENST00000566354 TAF1CQ15572 869 aaPredicted RBP14.1□□□□□ -0.15
VPS4A-204ENST00000566354 EXOC3L1Q86VI1 746 aa14.1□□□□□ -0.15
VPS4A-204ENST00000566354 IFNL1Q8IU54 200 aa14.1□□□□□ -0.15
VPS4A-204ENST00000566354 CCDC63Q8NA47 563 aa14.1□□□□□ -0.15
VPS4A-204ENST00000566354 SERPINB12Q96P63 405 aa14.1□□□□□ -0.15
VPS4A-204ENST00000566354 IWS1Q96ST2 819 aa14.1□□□□□ -0.15
VPS4A-204ENST00000566354 CBWD1Q9BRT8 395 aa14.1□□□□□ -0.15
VPS4A-204ENST00000566354 CCDC113Q9H0I3 377 aa14.1□□□□□ -0.15
VPS4A-204ENST00000566354 CHORDC1Q9UHD1 332 aaPredicted RBP14.1□□□□□ -0.15
VPS4A-204ENST00000566354 PLXNB2O15031 1838 aa14.1□□□□□ -0.15
VPS4A-204ENST00000566354 DOCK3Q8IZD9 2030 aa14.1□□□□□ -0.15
VPS4A-204ENST00000566354 SNX3O60493 162 aa14.09□□□□□ -0.15
VPS4A-204ENST00000566354 ITIH2P19823 946 aa14.09□□□□□ -0.15
VPS4A-204ENST00000566354 KCNJ1P48048 391 aa14.09□□□□□ -0.15
VPS4A-204ENST00000566354 IFNAR2P48551 515 aa14.09□□□□□ -0.15
VPS4A-204ENST00000566354 MFAP3P55082 362 aa14.09□□□□□ -0.15
VPS4A-204ENST00000566354 FAM110CQ1W6H9 321 aa14.09□□□□□ -0.15
VPS4A-204ENST00000566354 CCDC25Q86WR0 208 aa14.09□□□□□ -0.15
VPS4A-204ENST00000566354 HSPBP1Q9NZL4 362 aa14.09□□□□□ -0.15
VPS4A-204ENST00000566354 TISP43B9A030 160 aa14.09□□□□□ -0.15
VPS4A-204ENST00000566354 FSCN2O14926 492 aa14.09□□□□□ -0.15
VPS4A-204ENST00000566354 CYP26A1O43174 497 aa14.09□□□□□ -0.15
VPS4A-204ENST00000566354 ATMINO43313 823 aaPredicted RBP14.09□□□□□ -0.15
VPS4A-204ENST00000566354 ATP6V1G2O95670 118 aa14.09□□□□□ -0.15
VPS4A-204ENST00000566354 YY1P25490 414 aa14.09□□□□□ -0.15
VPS4A-204ENST00000566354 MCCD1P59942 119 aaPredicted RBP14.09□□□□□ -0.15
VPS4A-204ENST00000566354 FMO1Q01740 532 aa14.09□□□□□ -0.15
VPS4A-204ENST00000566354 RIPK1Q13546 671 aa14.09□□□□□ -0.15
VPS4A-204ENST00000566354 STXBP2Q15833 593 aa14.09□□□□□ -0.15
VPS4A-204ENST00000566354 DYDC1Q8WWB3 177 aa14.09□□□□□ -0.15
VPS4A-204ENST00000566354 SHC3Q92529 594 aa14.09□□□□□ -0.15
VPS4A-204ENST00000566354 KAT5Q92993 513 aa14.09□□□□□ -0.15
VPS4A-204ENST00000566354 ZNF653Q96CK0 615 aa14.09□□□□□ -0.15
VPS4A-204ENST00000566354 TMEM117Q9H0C3 514 aa14.09□□□□□ -0.15
VPS4A-204ENST00000566354 ADGRA2Q96PE1 1338 aa14.08□□□□□ -0.15
VPS4A-204ENST00000566354 P4HBP07237 508 aaKnown RBP14.08□□□□□ -0.16
VPS4A-204ENST00000566354 PLS3P13797 630 aa14.08□□□□□ -0.16
VPS4A-204ENST00000566354 EDNRBP24530 442 aa14.08□□□□□ -0.16
VPS4A-204ENST00000566354 MAEAQ7L5Y9 396 aa14.08□□□□□ -0.16
VPS4A-204ENST00000566354 EEPD1Q7L9B9 569 aa14.08□□□□□ -0.16
VPS4A-204ENST00000566354 NLRX1Q86UT6 975 aa14.08□□□□□ -0.16
VPS4A-204ENST00000566354 SLC47A2Q86VL8 602 aa14.08□□□□□ -0.16
VPS4A-204ENST00000566354 PPM1KQ8N3J5 372 aa14.08□□□□□ -0.16
VPS4A-204ENST00000566354 ZNF513Q8N8E2 541 aaPredicted RBP14.08□□□□□ -0.16
VPS4A-204ENST00000566354 ARHGEF2Q92974 986 aaKnown RBP14.08□□□□□ -0.16
VPS4A-204ENST00000566354 GPRASP2Q96D09 838 aa14.08□□□□□ -0.16
VPS4A-204ENST00000566354 KREMEN1Q96MU8 473 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms