RNA–Protein interactions for RNA: ENST00000565990.2

SF3B3-206, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 967 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-206ENST00000565990 ERVK-21P61565 698 aa13.62□□□□□ -0.23
SF3B3-206ENST00000565990 TFAMQ00059 246 aaKnown RBP13.62□□□□□ -0.23
SF3B3-206ENST00000565990 PPP3CAQ08209 521 aa13.62□□□□□ -0.23
SF3B3-206ENST00000565990 ZACNQ401N2 412 aa13.62□□□□□ -0.23
SF3B3-206ENST00000565990 CCDC40Q4G0X9 1142 aa13.62□□□□□ -0.23
SF3B3-206ENST00000565990 C9orf57Q5W0N0 161 aa13.62□□□□□ -0.23
SF3B3-206ENST00000565990 KCNT2Q6UVM3 1135 aa13.62□□□□□ -0.23
SF3B3-206ENST00000565990 SV2AQ7L0J3 742 aa13.62□□□□□ -0.23
SF3B3-206ENST00000565990 TRAPPC11Q7Z392 1133 aa13.62□□□□□ -0.23
SF3B3-206ENST00000565990 CCDC186Q7Z3E2 898 aa13.62□□□□□ -0.23
SF3B3-206ENST00000565990 AOPEPQ8N6M6 819 aa13.62□□□□□ -0.23
SF3B3-206ENST00000565990 C1orf127Q8N9H9 656 aa13.62□□□□□ -0.23
SF3B3-206ENST00000565990 BEST2Q8NFU1 509 aa13.62□□□□□ -0.23
SF3B3-206ENST00000565990 PAAF1Q9BRP4 392 aa13.62□□□□□ -0.23
SF3B3-206ENST00000565990 COLEC11Q9BWP8 271 aa13.62□□□□□ -0.23
SF3B3-206ENST00000565990 AAASQ9NRG9 546 aa13.62□□□□□ -0.23
SF3B3-206ENST00000565990 LIMA1Q9UHB6 759 aaKnown RBP13.62□□□□□ -0.23
SF3B3-206ENST00000565990 ITGA11Q9UKX5 1188 aa13.62□□□□□ -0.23
SF3B3-206ENST00000565990 FAN1Q9Y2M0 1017 aa13.62□□□□□ -0.23
SF3B3-206ENST00000565990 COQ4Q9Y3A0 265 aa13.62□□□□□ -0.23
SF3B3-206ENST00000565990 RWDD3Q9Y3V2 267 aa13.62□□□□□ -0.23
SF3B3-206ENST00000565990 KCNJ18B7U540 433 aa13.61□□□□□ -0.23
SF3B3-206ENST00000565990 CTIFO43310 598 aaKnown RBP13.61□□□□□ -0.23
SF3B3-206ENST00000565990 PRKCSHP14314 528 aaPredicted RBP13.61□□□□□ -0.23
SF3B3-206ENST00000565990 IGFBP6P24592 240 aaPredicted RBP13.61□□□□□ -0.23
SF3B3-206ENST00000565990 SLC11A1P49279 550 aa13.61□□□□□ -0.23
SF3B3-206ENST00000565990 RBP5P82980 135 aa13.61□□□□□ -0.23
SF3B3-206ENST00000565990 PLCB3Q01970 1234 aa13.61□□□□□ -0.23
SF3B3-206ENST00000565990 KCNH2Q12809 1159 aa13.61□□□□□ -0.23
SF3B3-206ENST00000565990 KCNJ12Q14500 433 aa13.61□□□□□ -0.23
SF3B3-206ENST00000565990 APTXQ7Z2E3 356 aaKnown RBP13.61□□□□□ -0.23
SF3B3-206ENST00000565990 DRC7Q8IY82 874 aa13.61□□□□□ -0.23
SF3B3-206ENST00000565990 SLC39A11Q8N1S5 342 aa13.61□□□□□ -0.23
SF3B3-206ENST00000565990 COLGALT1Q8NBJ5 622 aa13.61□□□□□ -0.23
SF3B3-206ENST00000565990 ANKRD36BP1Q96IX9 119 aa13.61□□□□□ -0.23
SF3B3-206ENST00000565990 CNOT6LQ96LI5 555 aaKnown RBP13.61□□□□□ -0.23
SF3B3-206ENST00000565990 SAMD11Q96NU1 681 aa13.61□□□□□ -0.23
SF3B3-206ENST00000565990 MTMR12Q9C0I1 747 aa13.61□□□□□ -0.23
SF3B3-206ENST00000565990 GOLGA2P5Q9HBQ8 144 aa13.61□□□□□ -0.23
SF3B3-206ENST00000565990 TMEM8AQ9HCN3 771 aa13.61□□□□□ -0.23
SF3B3-206ENST00000565990 PCDHB12Q9Y5F1 795 aa13.61□□□□□ -0.23
SF3B3-206ENST00000565990 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.61□□□□□ -0.23
SF3B3-206ENST00000565990 PLXNA4Q9HCM2 1894 aa13.61□□□□□ -0.23
SF3B3-206ENST00000565990 LAMA3Q16787 3333 aa13.6□□□□□ -0.23
SF3B3-206ENST00000565990 CASTOR2A6NHX0 329 aa13.6□□□□□ -0.23
SF3B3-206ENST00000565990 PODXLO00592 558 aa13.6□□□□□ -0.23
SF3B3-206ENST00000565990 TRANK1O15050 2925 aa13.6□□□□□ -0.23
SF3B3-206ENST00000565990 P4HA2O15460 535 aa13.6□□□□□ -0.23
SF3B3-206ENST00000565990 ZC3H11AO75152 810 aaKnown RBP eCLIP13.6□□□□□ -0.23
SF3B3-206ENST00000565990 STAU1O95793 577 aaKnown RBP13.6□□□□□ -0.23
SF3B3-206ENST00000565990 TNNC2P02585 160 aa13.6□□□□□ -0.23
SF3B3-206ENST00000565990 TRIM49P0CI25 452 aa13.6□□□□□ -0.23
SF3B3-206ENST00000565990 TRIM49CP0CI26 452 aa13.6□□□□□ -0.23
SF3B3-206ENST00000565990 DNAJB2P25686 324 aa13.6□□□□□ -0.23
SF3B3-206ENST00000565990 LILRA4P59901 499 aa13.6□□□□□ -0.23
SF3B3-206ENST00000565990 MIIPQ5JXC2 388 aa13.6□□□□□ -0.23
SF3B3-206ENST00000565990 TDRD10Q5VZ19 366 aaKnown RBP13.6□□□□□ -0.23
SF3B3-206ENST00000565990 LMBRD2Q68DH5 695 aaPredicted RBP13.6□□□□□ -0.23
SF3B3-206ENST00000565990 KRT39Q6A163 491 aa13.6□□□□□ -0.23
SF3B3-206ENST00000565990 RNF168Q8IYW5 571 aaPredicted RBP13.6□□□□□ -0.23
SF3B3-206ENST00000565990 TMEM130Q8N3G9 435 aa13.6□□□□□ -0.23
SF3B3-206ENST00000565990 CCDC150Q8NCX0 1101 aa13.6□□□□□ -0.23
SF3B3-206ENST00000565990 TIFAQ96CG3 184 aa13.6□□□□□ -0.23
SF3B3-206ENST00000565990 IGSF21Q96ID5 467 aa13.6□□□□□ -0.23
SF3B3-206ENST00000565990 ZNF558Q96NG5 402 aa13.6□□□□□ -0.23
SF3B3-206ENST00000565990 TGS1Q96RS0 853 aaKnown RBP13.6□□□□□ -0.23
SF3B3-206ENST00000565990 TUBGCP2Q9BSJ2 902 aa13.6□□□□□ -0.23
SF3B3-206ENST00000565990 NKX2-4Q9H2Z4 354 aa13.6□□□□□ -0.23
SF3B3-206ENST00000565990 SLC28A3Q9HAS3 691 aa13.6□□□□□ -0.23
SF3B3-206ENST00000565990 MARCH5Q9NX47 278 aa13.6□□□□□ -0.23
SF3B3-206ENST00000565990 SPG21Q9NZD8 308 aa13.6□□□□□ -0.23
SF3B3-206ENST00000565990 MAGEC2Q9UBF1 373 aaPredicted RBP13.6□□□□□ -0.23
SF3B3-206ENST00000565990 CACNG4Q9UBN1 327 aa13.6□□□□□ -0.23
SF3B3-206ENST00000565990 PYCARDQ9ULZ3 195 aa13.6□□□□□ -0.23
SF3B3-206ENST00000565990 CHD7Q9P2D1 2997 aa13.6□□□□□ -0.23
SF3B3-206ENST00000565990 CCP110O43303 1012 aa13.59□□□□□ -0.23
SF3B3-206ENST00000565990 VNN1O95497 513 aa13.59□□□□□ -0.23
SF3B3-206ENST00000565990 ITGB3P05106 788 aa13.59□□□□□ -0.23
SF3B3-206ENST00000565990 ITGB1P05556 798 aa13.59□□□□□ -0.23
SF3B3-206ENST00000565990 TMEM191BP0C7N4 346 aa13.59□□□□□ -0.23
SF3B3-206ENST00000565990 OR1G1P47890 313 aa13.59□□□□□ -0.23
SF3B3-206ENST00000565990 GCLMP48507 274 aa13.59□□□□□ -0.23
SF3B3-206ENST00000565990 FMO5P49326 533 aa13.59□□□□□ -0.23
SF3B3-206ENST00000565990 AARSP49588 968 aaKnown RBP eCLIP13.59□□□□□ -0.23
SF3B3-206ENST00000565990 GUCY2FP51841 1108 aa13.59□□□□□ -0.23
SF3B3-206ENST00000565990 MAN2A1Q16706 1144 aa13.59□□□□□ -0.23
SF3B3-206ENST00000565990 SGSM1Q2NKQ1 1148 aa13.59□□□□□ -0.23
SF3B3-206ENST00000565990 CBWD6Q4V339 395 aa13.59□□□□□ -0.23
SF3B3-206ENST00000565990 VWA3BQ502W6 1294 aa13.59□□□□□ -0.23
SF3B3-206ENST00000565990 EPC2Q52LR7 807 aa13.59□□□□□ -0.23
SF3B3-206ENST00000565990 CBWD3Q5JTY5 395 aa13.59□□□□□ -0.23
SF3B3-206ENST00000565990 CBWD5Q5RIA9 395 aa13.59□□□□□ -0.23
SF3B3-206ENST00000565990 DDX53Q86TM3 631 aaKnown RBP13.59□□□□□ -0.23
SF3B3-206ENST00000565990 LRRC52Q8N7C0 313 aa13.59□□□□□ -0.23
SF3B3-206ENST00000565990 SPC24Q8NBT2 197 aa13.59□□□□□ -0.23
SF3B3-206ENST00000565990 C3orf58Q8NDZ4 430 aa13.59□□□□□ -0.23
SF3B3-206ENST00000565990 FAM84AQ96KN4 292 aa13.59□□□□□ -0.23
SF3B3-206ENST00000565990 C17orf80Q9BSJ5 609 aa13.59□□□□□ -0.23
SF3B3-206ENST00000565990 VRTNQ9H8Y1 702 aa13.59□□□□□ -0.23
SF3B3-206ENST00000565990 AGAP1Q9UPQ3 857 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms