RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 AGAP1Q9UPQ3 857 aa22.23■■□□□ 1.15
CLN3-212ENST00000564574 PCDHA11Q9Y5I1 949 aa22.23■■□□□ 1.15
CLN3-212ENST00000564574 FSD2A1L4K1 749 aa22.22■■□□□ 1.15
CLN3-212ENST00000564574 CASTOR2A6NHX0 329 aa22.22■■□□□ 1.15
CLN3-212ENST00000564574 TMEM189-UBE2V1I3L0A0 370 aa22.22■■□□□ 1.15
CLN3-212ENST00000564574 ZC3H11AO75152 810 aaKnown RBP eCLIP22.22■■□□□ 1.15
CLN3-212ENST00000564574 ALDH2P05091 517 aa22.22■■□□□ 1.15
CLN3-212ENST00000564574 CLCNKBP51801 687 aa22.22■■□□□ 1.15
CLN3-212ENST00000564574 UBXN1Q04323 297 aa22.22■■□□□ 1.15
CLN3-212ENST00000564574 NR1I3Q14994 352 aa22.22■■□□□ 1.15
CLN3-212ENST00000564574 UPP1Q16831 310 aa22.22■■□□□ 1.15
CLN3-212ENST00000564574 SGSM1Q2NKQ1 1148 aa22.22■■□□□ 1.15
CLN3-212ENST00000564574 DCLRE1AQ6PJP8 1040 aa22.22■■□□□ 1.15
CLN3-212ENST00000564574 CCDC150Q8NCX0 1101 aa22.22■■□□□ 1.15
CLN3-212ENST00000564574 NAP1L5Q96NT1 182 aaPredicted RBP22.22■■□□□ 1.15
CLN3-212ENST00000564574 IMPG2Q9BZV3 1241 aa22.22■■□□□ 1.15
CLN3-212ENST00000564574 AAASQ9NRG9 546 aa22.22■■□□□ 1.15
CLN3-212ENST00000564574 IFNKQ9P0W0 207 aa22.22■■□□□ 1.15
CLN3-212ENST00000564574 DNAJB4Q9UDY4 337 aa22.22■■□□□ 1.15
CLN3-212ENST00000564574 MRPL42Q9Y6G3 142 aaKnown RBP22.22■■□□□ 1.15
CLN3-212ENST00000564574 B4GALT3O60512 393 aa22.21■■□□□ 1.15
CLN3-212ENST00000564574 CST3P01034 146 aaPredicted RBP22.21■■□□□ 1.15
CLN3-212ENST00000564574 OR1G1P47890 313 aa22.21■■□□□ 1.15
CLN3-212ENST00000564574 TAF6P49848 677 aa22.21■■□□□ 1.15
CLN3-212ENST00000564574 MYO1EQ12965 1108 aa22.21■■□□□ 1.15
CLN3-212ENST00000564574 EXOC3L4Q17RC7 722 aa22.21■■□□□ 1.15
CLN3-212ENST00000564574 SPOUT1Q5T280 376 aaKnown RBP22.21■■□□□ 1.15
CLN3-212ENST00000564574 EHBP1Q8NDI1 1231 aa22.21■■□□□ 1.15
CLN3-212ENST00000564574 ERGIC2Q96RQ1 377 aa22.21■■□□□ 1.15
CLN3-212ENST00000564574 COLEC11Q9BWP8 271 aa22.21■■□□□ 1.15
CLN3-212ENST00000564574 VRTNQ9H8Y1 702 aa22.21■■□□□ 1.15
CLN3-212ENST00000564574 GCNT4Q9P109 453 aa22.21■■□□□ 1.15
CLN3-212ENST00000564574 FAN1Q9Y2M0 1017 aa22.21■■□□□ 1.15
CLN3-212ENST00000564574 RWDD3Q9Y3V2 267 aa22.21■■□□□ 1.15
CLN3-212ENST00000564574 A0A1W2PPC1 479 aa22.2■■□□□ 1.14
CLN3-212ENST00000564574 GALTP07902 379 aa22.2■■□□□ 1.14
CLN3-212ENST00000564574 SLC11A1P49279 550 aa22.2■■□□□ 1.14
CLN3-212ENST00000564574 ALDH7A1P49419 539 aaKnown RBP22.2■■□□□ 1.14
CLN3-212ENST00000564574 BCAR1P56945 870 aa22.2■■□□□ 1.14
CLN3-212ENST00000564574 MYL6P60660 151 aa22.2■■□□□ 1.14
CLN3-212ENST00000564574 PLCB2Q00722 1185 aa22.2■■□□□ 1.14
CLN3-212ENST00000564574 GSE1Q14687 1217 aa22.2■■□□□ 1.14
CLN3-212ENST00000564574 RAB30Q15771 203 aa22.2■■□□□ 1.14
CLN3-212ENST00000564574 SV2CQ496J9 727 aa22.2■■□□□ 1.14
CLN3-212ENST00000564574 WDR44Q5JSH3 913 aa22.2■■□□□ 1.14
CLN3-212ENST00000564574 CLP1Q92989 425 aaKnown RBP22.2■■□□□ 1.14
CLN3-212ENST00000564574 ZNF558Q96NG5 402 aa22.2■■□□□ 1.14
CLN3-212ENST00000564574 A0A1W2PQC6 194 aa22.19■■□□□ 1.14
CLN3-212ENST00000564574 NRP1O14786 923 aa22.19■■□□□ 1.14
CLN3-212ENST00000564574 ASS1P00966 412 aaKnown RBP22.19■■□□□ 1.14
CLN3-212ENST00000564574 RABGGTBP53611 331 aa22.19■■□□□ 1.14
CLN3-212ENST00000564574 ZNF699Q32M78 642 aa22.19■■□□□ 1.14
CLN3-212ENST00000564574 FAM109BQ6ICB4 259 aaPredicted RBP22.19■■□□□ 1.14
CLN3-212ENST00000564574 COLGALT1Q8NBJ5 622 aa22.19■■□□□ 1.14
CLN3-212ENST00000564574 LMO3Q8TAP4 145 aa22.19■■□□□ 1.14
CLN3-212ENST00000564574 SEMA4DQ92854 862 aa22.19■■□□□ 1.14
CLN3-212ENST00000564574 HPDLQ96IR7 371 aa22.19■■□□□ 1.14
CLN3-212ENST00000564574 FAXDC2Q96IV6 333 aa22.19■■□□□ 1.14
CLN3-212ENST00000564574 PAAF1Q9BRP4 392 aa22.19■■□□□ 1.14
CLN3-212ENST00000564574 TRIM5Q9C035 493 aa22.19■■□□□ 1.14
CLN3-212ENST00000564574 XPO4Q9C0E2 1151 aaKnown RBP22.19■■□□□ 1.14
CLN3-212ENST00000564574 INTS2Q9H0H0 1204 aaKnown RBP22.19■■□□□ 1.14
CLN3-212ENST00000564574 GRPEL1Q9HAV7 217 aa22.19■■□□□ 1.14
CLN3-212ENST00000564574 HCSTQ9UBK5 93 aa22.19■■□□□ 1.14
CLN3-212ENST00000564574 GRXCR1A8MXD5 290 aa22.18■■□□□ 1.14
CLN3-212ENST00000564574 PPEF2O14830 753 aa22.18■■□□□ 1.14
CLN3-212ENST00000564574 TEX33O43247 280 aa22.18■■□□□ 1.14
CLN3-212ENST00000564574 B3GAT3O94766 335 aa22.18■■□□□ 1.14
CLN3-212ENST00000564574 KCNT2Q6UVM3 1135 aa22.18■■□□□ 1.14
CLN3-212ENST00000564574 TMEM130Q8N3G9 435 aa22.18■■□□□ 1.14
CLN3-212ENST00000564574 CRACR2AQ9BSW2 395 aa22.18■■□□□ 1.14
CLN3-212ENST00000564574 XYLT2Q9H1B5 865 aa22.18■■□□□ 1.14
CLN3-212ENST00000564574 MSRAQ9UJ68 235 aa22.18■■□□□ 1.14
CLN3-212ENST00000564574 PRG3Q9Y2Y8 225 aaPredicted RBP22.18■■□□□ 1.14
CLN3-212ENST00000564574 NUB1Q9Y5A7 615 aa22.18■■□□□ 1.14
CLN3-212ENST00000564574 PCDHB12Q9Y5F1 795 aa22.18■■□□□ 1.14
CLN3-212ENST00000564574 KIF4AO95239 1232 aa22.17■■□□□ 1.14
CLN3-212ENST00000564574 P4HA1P13674 534 aa22.17■■□□□ 1.14
CLN3-212ENST00000564574 PON1P27169 355 aa22.17■■□□□ 1.14
CLN3-212ENST00000564574 PPM1AP35813 382 aa22.17■■□□□ 1.14
CLN3-212ENST00000564574 LILRA4P59901 499 aa22.17■■□□□ 1.14
CLN3-212ENST00000564574 NOP14P78316 857 aaKnown RBP22.17■■□□□ 1.14
CLN3-212ENST00000564574 KCNMA1Q12791 1236 aa22.17■■□□□ 1.14
CLN3-212ENST00000564574 SYCP1Q15431 976 aa22.17■■□□□ 1.14
CLN3-212ENST00000564574 ZNF667Q5HYK9 610 aa22.17■■□□□ 1.14
CLN3-212ENST00000564574 TRIM65Q6PJ69 517 aa22.17■■□□□ 1.14
CLN3-212ENST00000564574 FAM81BQ96LP2 452 aa22.17■■□□□ 1.14
CLN3-212ENST00000564574 SAMD11Q96NU1 681 aa22.17■■□□□ 1.14
CLN3-212ENST00000564574 NT5C1BQ96P26 610 aa22.17■■□□□ 1.14
CLN3-212ENST00000564574 PLCB1Q9NQ66 1216 aa22.17■■□□□ 1.14
CLN3-212ENST00000564574 CACNG4Q9UBN1 327 aa22.17■■□□□ 1.14
CLN3-212ENST00000564574 ADAM28Q9UKQ2 775 aa22.17■■□□□ 1.14
CLN3-212ENST00000564574 DAAM1Q9Y4D1 1078 aa22.17■■□□□ 1.14
CLN3-212ENST00000564574 TRIOBPQ9H2D6 2365 aa22.17■■□□□ 1.14
CLN3-212ENST00000564574 ARHGEF37A1IGU5 675 aa22.16■■□□□ 1.14
CLN3-212ENST00000564574 LCHNA4D1U4 455 aa22.16■■□□□ 1.14
CLN3-212ENST00000564574 LINC01553A4QN01 128 aa22.16■■□□□ 1.14
CLN3-212ENST00000564574 KPNA7A9QM74 516 aa22.16■■□□□ 1.14
CLN3-212ENST00000564574 AP5Z1O43299 807 aa22.16■■□□□ 1.14
CLN3-212ENST00000564574 TRAPPC3O43617 180 aa22.16■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms