RNA–Protein interactions for RNA: ENST00000563226.1

SMPD3-203, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 1 (best) BASIC

Gene SMPD3, Length 2,093 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-203ENST00000563226 KAT6AQ92794 2004 aa20.44■□□□□ 0.86
SMPD3-203ENST00000563226 H3BRB1 525 aa20.43■□□□□ 0.86
SMPD3-203ENST00000563226 PHKA2P46019 1235 aa20.43■□□□□ 0.86
SMPD3-203ENST00000563226 ZNF132P52740 706 aa20.43■□□□□ 0.86
SMPD3-203ENST00000563226 GPS2Q13227 327 aa20.43■□□□□ 0.86
SMPD3-203ENST00000563226 ACVR2BQ13705 512 aa20.43■□□□□ 0.86
SMPD3-203ENST00000563226 DUSP28Q4G0W2 176 aa20.43■□□□□ 0.86
SMPD3-203ENST00000563226 CST9Q5W186 159 aa20.43■□□□□ 0.86
SMPD3-203ENST00000563226 EMBQ6PCB8 327 aa20.43■□□□□ 0.86
SMPD3-203ENST00000563226 CPB2Q96IY4 423 aa20.43■□□□□ 0.86
SMPD3-203ENST00000563226 TUT1Q9H6E5 874 aaKnown RBP20.43■□□□□ 0.86
SMPD3-203ENST00000563226 PRMT7Q9NVM4 692 aaPredicted RBP20.43■□□□□ 0.86
SMPD3-203ENST00000563226 CPA4Q9UI42 421 aa20.43■□□□□ 0.86
SMPD3-203ENST00000563226 MROH7Q68CQ1 1323 aa20.43■□□□□ 0.86
SMPD3-203ENST00000563226 MAGEB2O15479 319 aa20.42■□□□□ 0.86
SMPD3-203ENST00000563226 PPFIA4O75335 1185 aa20.42■□□□□ 0.86
SMPD3-203ENST00000563226 MMP3P08254 477 aa20.42■□□□□ 0.86
SMPD3-203ENST00000563226 CD58P19256 250 aa20.42■□□□□ 0.86
SMPD3-203ENST00000563226 AARSP49588 968 aaKnown RBP eCLIP20.42■□□□□ 0.86
SMPD3-203ENST00000563226 NOMO3P69849 1222 aa20.42■□□□□ 0.86
SMPD3-203ENST00000563226 MTHFD1LQ6UB35 978 aa20.42■□□□□ 0.86
SMPD3-203ENST00000563226 MON1BQ7L1V2 547 aa20.42■□□□□ 0.86
SMPD3-203ENST00000563226 UBL4BQ8N7F7 174 aa20.42■□□□□ 0.86
SMPD3-203ENST00000563226 OR6J1Q8NGC5 347 aa20.42■□□□□ 0.86
SMPD3-203ENST00000563226 RIN2Q8WYP3 895 aaPredicted RBP20.42■□□□□ 0.86
SMPD3-203ENST00000563226 CAVIN3Q969G5 261 aa20.42■□□□□ 0.86
SMPD3-203ENST00000563226 CELF4Q9BZC1 486 aaKnown RBP20.42■□□□□ 0.86
SMPD3-203ENST00000563226 ANAPC7Q9UJX3 599 aa20.42■□□□□ 0.86
SMPD3-203ENST00000563226 AGPSO00116 658 aa20.42■□□□□ 0.86
SMPD3-203ENST00000563226 THAP12O43422 761 aa20.42■□□□□ 0.86
SMPD3-203ENST00000563226 SPOPO43791 374 aa20.42■□□□□ 0.86
SMPD3-203ENST00000563226 SYF2O95926 243 aaKnown RBP20.42■□□□□ 0.86
SMPD3-203ENST00000563226 TMEM191BP0C7N4 346 aa20.42■□□□□ 0.86
SMPD3-203ENST00000563226 NSFP46459 744 aaKnown RBP20.42■□□□□ 0.86
SMPD3-203ENST00000563226 POU5F1Q01860 360 aaKnown RBP20.42■□□□□ 0.86
SMPD3-203ENST00000563226 SURF1Q15526 300 aa20.42■□□□□ 0.86
SMPD3-203ENST00000563226 MARCH8Q5T0T0 291 aa20.42■□□□□ 0.86
SMPD3-203ENST00000563226 SCARA5Q6ZMJ2 495 aa20.42■□□□□ 0.86
SMPD3-203ENST00000563226 FAN1Q9Y2M0 1017 aa20.42■□□□□ 0.86
SMPD3-203ENST00000563226 COL1A2P08123 1366 aa20.41■□□□□ 0.86
SMPD3-203ENST00000563226 BHMG1C9JSJ3 638 aaPredicted RBP20.41■□□□□ 0.86
SMPD3-203ENST00000563226 TTI1O43156 1089 aa20.41■□□□□ 0.86
SMPD3-203ENST00000563226 B4GALT4O60513 344 aa20.41■□□□□ 0.86
SMPD3-203ENST00000563226 MAPK4P31152 587 aa20.41■□□□□ 0.86
SMPD3-203ENST00000563226 CTNNA1P35221 906 aaKnown RBP20.41■□□□□ 0.86
SMPD3-203ENST00000563226 PAK2Q13177 524 aa20.41■□□□□ 0.86
SMPD3-203ENST00000563226 FAM187BQ17R55 369 aa20.41■□□□□ 0.86
SMPD3-203ENST00000563226 DDX42Q86XP3 938 aaKnown RBP eCLIP20.41■□□□□ 0.86
SMPD3-203ENST00000563226 PPP1R13LQ8WUF5 828 aa20.41■□□□□ 0.86
SMPD3-203ENST00000563226 C11orf70Q9BRQ4 267 aa20.41■□□□□ 0.86
SMPD3-203ENST00000563226 NIF3L1Q9GZT8 377 aa20.41■□□□□ 0.86
SMPD3-203ENST00000563226 XYLT2Q9H1B5 865 aa20.41■□□□□ 0.86
SMPD3-203ENST00000563226 WNT8AQ9H1J5 351 aa20.41■□□□□ 0.86
SMPD3-203ENST00000563226 ACBD3Q9H3P7 528 aa20.41■□□□□ 0.86
SMPD3-203ENST00000563226 ABHD16BQ9H3Z7 469 aa20.41■□□□□ 0.86
SMPD3-203ENST00000563226 PDZD7Q9H5P4 517 aa20.41■□□□□ 0.86
SMPD3-203ENST00000563226 AVENQ9NQS1 362 aaPredicted RBP20.41■□□□□ 0.86
SMPD3-203ENST00000563226 ZNF236Q9UL36 1845 aa20.41■□□□□ 0.86
SMPD3-203ENST00000563226 NFICP08651 508 aa20.41■□□□□ 0.86
SMPD3-203ENST00000563226 PYGMP11217 842 aa20.41■□□□□ 0.86
SMPD3-203ENST00000563226 ECHS1P30084 290 aa20.41■□□□□ 0.86
SMPD3-203ENST00000563226 POU5F1BQ06416 359 aa20.41■□□□□ 0.86
SMPD3-203ENST00000563226 PPFIA1Q13136 1202 aa20.41■□□□□ 0.86
SMPD3-203ENST00000563226 TRPC3Q13507 836 aa20.41■□□□□ 0.86
SMPD3-203ENST00000563226 GRIK4Q16099 956 aa20.41■□□□□ 0.86
SMPD3-203ENST00000563226 ZNF394Q53GI3 561 aa20.41■□□□□ 0.86
SMPD3-203ENST00000563226 PRAMEF19Q5SWL8 479 aa20.41■□□□□ 0.86
SMPD3-203ENST00000563226 IFNLR1Q8IU57 520 aaPredicted RBP20.41■□□□□ 0.86
SMPD3-203ENST00000563226 ZDHHC14Q8IZN3 488 aa20.41■□□□□ 0.86
SMPD3-203ENST00000563226 SLITRK6Q9H5Y7 841 aa20.41■□□□□ 0.86
SMPD3-203ENST00000563226 RPF1Q9H9Y2 349 aaKnown RBP20.41■□□□□ 0.86
SMPD3-203ENST00000563226 WEE2P0C1S8 567 aa20.4■□□□□ 0.86
SMPD3-203ENST00000563226 HOXD8P13378 290 aaPredicted RBP20.4■□□□□ 0.86
SMPD3-203ENST00000563226 GGCXP38435 758 aa20.4■□□□□ 0.86
SMPD3-203ENST00000563226 GUCY2FP51841 1108 aa20.4■□□□□ 0.86
SMPD3-203ENST00000563226 FAM193AP78312 1265 aa20.4■□□□□ 0.86
SMPD3-203ENST00000563226 SGSM1Q2NKQ1 1148 aa20.4■□□□□ 0.86
SMPD3-203ENST00000563226 ZNF699Q32M78 642 aa20.4■□□□□ 0.86
SMPD3-203ENST00000563226 CISHQ9NSE2 258 aa20.4■□□□□ 0.86
SMPD3-203ENST00000563226 VPS18Q9P253 973 aa20.4■□□□□ 0.86
SMPD3-203ENST00000563226 POLIQ9UNA4 740 aa20.4■□□□□ 0.86
SMPD3-203ENST00000563226 TNNC2P02585 160 aa20.39■□□□□ 0.86
SMPD3-203ENST00000563226 STAG3L1P0CL83 205 aa20.39■□□□□ 0.86
SMPD3-203ENST00000563226 ARF4P18085 180 aaPredicted RBP20.39■□□□□ 0.86
SMPD3-203ENST00000563226 CTNNA2P26232 953 aa20.39■□□□□ 0.86
SMPD3-203ENST00000563226 ASPAP45381 313 aa20.39■□□□□ 0.86
SMPD3-203ENST00000563226 ZNF606Q8WXB4 792 aa20.39■□□□□ 0.86
SMPD3-203ENST00000563226 ANKRD36BP1Q96IX9 119 aa20.39■□□□□ 0.86
SMPD3-203ENST00000563226 SIX4Q9UIU6 781 aa20.39■□□□□ 0.86
SMPD3-203ENST00000563226 PCDHA3Q9Y5H8 950 aa20.39■□□□□ 0.86
SMPD3-203ENST00000563226 SLC15A5A6NIM6 579 aa20.39■□□□□ 0.85
SMPD3-203ENST00000563226 LACTBL1A8MY62 500 aa20.39■□□□□ 0.85
SMPD3-203ENST00000563226 IGF2BP3O00425 579 aaKnown RBP eCLIP20.39■□□□□ 0.85
SMPD3-203ENST00000563226 MYBL1P10243 752 aa20.39■□□□□ 0.85
SMPD3-203ENST00000563226 BRD2P25440 801 aaKnown RBP20.39■□□□□ 0.85
SMPD3-203ENST00000563226 PTP4A2Q12974 167 aa20.39■□□□□ 0.85
SMPD3-203ENST00000563226 TRIM72Q6ZMU5 477 aa20.39■□□□□ 0.85
SMPD3-203ENST00000563226 MMS22LQ6ZRQ5 1243 aa20.39■□□□□ 0.85
SMPD3-203ENST00000563226 FAM71BQ8TC56 605 aa20.39■□□□□ 0.85
SMPD3-203ENST00000563226 NLRP7Q8WX94 980 aa20.39■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms