RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 MTCH2Q9Y6C9 303 aa10.59□□□□□ -0.71
CLK3-208ENST00000562626 MYO16Q9Y6X6 1858 aa10.58□□□□□ -0.72
CLK3-208ENST00000562626 HIDE1A8MVS5 230 aa10.58□□□□□ -0.72
CLK3-208ENST00000562626 TMEM189-UBE2V1I3L0A0 370 aa10.58□□□□□ -0.72
CLK3-208ENST00000562626 CETN3O15182 167 aa10.58□□□□□ -0.72
CLK3-208ENST00000562626 MAPK13O15264 365 aa10.58□□□□□ -0.72
CLK3-208ENST00000562626 B3GAT3O94766 335 aa10.58□□□□□ -0.72
CLK3-208ENST00000562626 VNN1O95497 513 aa10.58□□□□□ -0.72
CLK3-208ENST00000562626 CST3P01034 146 aaPredicted RBP10.58□□□□□ -0.72
CLK3-208ENST00000562626 C4BPAP04003 597 aaKnown RBP10.58□□□□□ -0.72
CLK3-208ENST00000562626 TNNI1P19237 187 aa10.58□□□□□ -0.72
CLK3-208ENST00000562626 TKTP29401 623 aaKnown RBP10.58□□□□□ -0.72
CLK3-208ENST00000562626 POLR2BP30876 1174 aaKnown RBP10.58□□□□□ -0.72
CLK3-208ENST00000562626 GTF2F1P35269 517 aaKnown RBP eCLIP10.58□□□□□ -0.72
CLK3-208ENST00000562626 PSMC2P35998 433 aaKnown RBP10.58□□□□□ -0.72
CLK3-208ENST00000562626 VAMP7P51809 220 aa10.58□□□□□ -0.72
CLK3-208ENST00000562626 RBM10P98175 930 aaKnown RBP10.58□□□□□ -0.72
CLK3-208ENST00000562626 BFSP1Q12934 665 aa10.58□□□□□ -0.72
CLK3-208ENST00000562626 NCAPHQ15003 741 aa10.58□□□□□ -0.72
CLK3-208ENST00000562626 STX1AQ16623 288 aa10.58□□□□□ -0.72
CLK3-208ENST00000562626 ZSCAN23Q3MJ62 389 aa10.58□□□□□ -0.72
CLK3-208ENST00000562626 ANO6Q4KMQ2 910 aa10.58□□□□□ -0.72
CLK3-208ENST00000562626 RTP2Q5QGT7 225 aa10.58□□□□□ -0.72
CLK3-208ENST00000562626 PLPP4Q5VZY2 271 aa10.58□□□□□ -0.72
CLK3-208ENST00000562626 DCLRE1AQ6PJP8 1040 aa10.58□□□□□ -0.72
CLK3-208ENST00000562626 FOXR2Q6PJQ5 311 aa10.58□□□□□ -0.72
CLK3-208ENST00000562626 TRAPPC11Q7Z392 1133 aa10.58□□□□□ -0.72
CLK3-208ENST00000562626 DDX53Q86TM3 631 aaKnown RBP10.58□□□□□ -0.72
CLK3-208ENST00000562626 WDR49Q8IV35 697 aa10.58□□□□□ -0.72
CLK3-208ENST00000562626 CSGALNACT2Q8N6G5 542 aa10.58□□□□□ -0.72
CLK3-208ENST00000562626 FEZF2Q8TBJ5 459 aa10.58□□□□□ -0.72
CLK3-208ENST00000562626 RSPH1Q8WYR4 309 aa10.58□□□□□ -0.72
CLK3-208ENST00000562626 TMEM169Q96HH4 297 aa10.58□□□□□ -0.72
CLK3-208ENST00000562626 MKNK1Q9BUB5 465 aa10.58□□□□□ -0.72
CLK3-208ENST00000562626 HERC2P3Q9BVR0 1158 aa10.58□□□□□ -0.72
CLK3-208ENST00000562626 COLEC11Q9BWP8 271 aa10.58□□□□□ -0.72
CLK3-208ENST00000562626 GTPBP4Q9BZE4 634 aaKnown RBP10.58□□□□□ -0.72
CLK3-208ENST00000562626 HSD3B7Q9H2F3 369 aa10.58□□□□□ -0.72
CLK3-208ENST00000562626 SAMSN1Q9NSI8 373 aaKnown RBP10.58□□□□□ -0.72
CLK3-208ENST00000562626 AGAP1Q9UPQ3 857 aa10.58□□□□□ -0.72
CLK3-208ENST00000562626 PRUNE2Q8WUY3 3088 aa10.57□□□□□ -0.72
CLK3-208ENST00000562626 ANAPC1Q9H1A4 1944 aa10.57□□□□□ -0.72
CLK3-208ENST00000562626 VCANP13611 3396 aa10.57□□□□□ -0.72
CLK3-208ENST00000562626 BICDL2A1A5D9 508 aa10.57□□□□□ -0.72
CLK3-208ENST00000562626 ADAM12O43184 909 aa10.57□□□□□ -0.72
CLK3-208ENST00000562626 HCRTO43612 131 aa10.57□□□□□ -0.72
CLK3-208ENST00000562626 LILRB3O75022 631 aa10.57□□□□□ -0.72
CLK3-208ENST00000562626 TMEM191BP0C7N4 346 aa10.57□□□□□ -0.72
CLK3-208ENST00000562626 RPL13P26373 211 aaKnown RBP10.57□□□□□ -0.72
CLK3-208ENST00000562626 RPL9P32969 192 aaKnown RBP10.57□□□□□ -0.72
CLK3-208ENST00000562626 PPM1AP35813 382 aa10.57□□□□□ -0.72
CLK3-208ENST00000562626 PPP1R2P41236 205 aa10.57□□□□□ -0.72
CLK3-208ENST00000562626 GCLMP48507 274 aa10.57□□□□□ -0.72
CLK3-208ENST00000562626 AARSP49588 968 aaKnown RBP eCLIP10.57□□□□□ -0.72
CLK3-208ENST00000562626 LILRA4P59901 499 aa10.57□□□□□ -0.72
CLK3-208ENST00000562626 CBWD6Q4V339 395 aa10.57□□□□□ -0.72
CLK3-208ENST00000562626 CBWD3Q5JTY5 395 aa10.57□□□□□ -0.72
CLK3-208ENST00000562626 CBWD5Q5RIA9 395 aa10.57□□□□□ -0.72
CLK3-208ENST00000562626 FAM171A1Q5VUB5 890 aa10.57□□□□□ -0.72
CLK3-208ENST00000562626 KIAA0319Q5VV43 1072 aa10.57□□□□□ -0.72
CLK3-208ENST00000562626 SASS6Q6UVJ0 657 aa10.57□□□□□ -0.72
CLK3-208ENST00000562626 PRSS55Q6UWB4 352 aaPredicted RBP10.57□□□□□ -0.72
CLK3-208ENST00000562626 RSPO2Q6UXX9 243 aaPredicted RBP10.57□□□□□ -0.72
CLK3-208ENST00000562626 FILIP1Q7Z7B0 1213 aa10.57□□□□□ -0.72
CLK3-208ENST00000562626 NT5DC4Q86YG4 428 aa10.57□□□□□ -0.72
CLK3-208ENST00000562626 VPS52Q8N1B4 723 aa10.57□□□□□ -0.72
CLK3-208ENST00000562626 BEST2Q8NFU1 509 aa10.57□□□□□ -0.72
CLK3-208ENST00000562626 TMC2Q8TDI7 906 aa10.57□□□□□ -0.72
CLK3-208ENST00000562626 SEMA4DQ92854 862 aa10.57□□□□□ -0.72
CLK3-208ENST00000562626 SLC35C1Q96A29 364 aa10.57□□□□□ -0.72
CLK3-208ENST00000562626 CEP63Q96MT8 703 aa10.57□□□□□ -0.72
CLK3-208ENST00000562626 UROC1Q96N76 676 aa10.57□□□□□ -0.72
CLK3-208ENST00000562626 MMRN2Q9H8L6 949 aa10.57□□□□□ -0.72
CLK3-208ENST00000562626 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.57□□□□□ -0.721e-7■■■■■ 115.4
CLK3-208ENST00000562626 TLR9Q9NR96 1032 aa10.57□□□□□ -0.72
CLK3-208ENST00000562626 CHST7Q9NS84 486 aa10.57□□□□□ -0.72
CLK3-208ENST00000562626 FRMD4BQ9Y2L6 1034 aa10.57□□□□□ -0.72
CLK3-208ENST00000562626 NME7Q9Y5B8 376 aa10.57□□□□□ -0.72
CLK3-208ENST00000562626 TIMM13Q9Y5L4 95 aaPredicted RBP10.57□□□□□ -0.72
CLK3-208ENST00000562626 SPTBN5Q9NRC6 3674 aaKnown RBP10.56□□□□□ -0.72
CLK3-208ENST00000562626 C2CD2LO14523 706 aa10.56□□□□□ -0.72
CLK3-208ENST00000562626 SLC16A3O15427 465 aaKnown RBP10.56□□□□□ -0.72
CLK3-208ENST00000562626 TADA2AO75478 443 aa10.56□□□□□ -0.72
CLK3-208ENST00000562626 SOD2P04179 222 aa10.56□□□□□ -0.72
CLK3-208ENST00000562626 KRT19P08727 400 aa10.56□□□□□ -0.72
CLK3-208ENST00000562626 CTSAP10619 480 aa10.56□□□□□ -0.72
CLK3-208ENST00000562626 EPB41P11171 864 aaKnown RBP10.56□□□□□ -0.72
CLK3-208ENST00000562626 RPL17P18621 184 aaKnown RBP10.56□□□□□ -0.72
CLK3-208ENST00000562626 POU3F3P20264 500 aaPredicted RBP10.56□□□□□ -0.72
CLK3-208ENST00000562626 PTMSP20962 102 aa10.56□□□□□ -0.72
CLK3-208ENST00000562626 FGFR3P22607 806 aa10.56□□□□□ -0.72
CLK3-208ENST00000562626 IGFBP4P22692 258 aa10.56□□□□□ -0.72
CLK3-208ENST00000562626 ERCC5P28715 1186 aaPredicted RBP10.56□□□□□ -0.72
CLK3-208ENST00000562626 MYL6P60660 151 aa10.56□□□□□ -0.72
CLK3-208ENST00000562626 SURF1Q15526 300 aa10.56□□□□□ -0.72
CLK3-208ENST00000562626 PTPN14Q15678 1187 aa10.56□□□□□ -0.72
CLK3-208ENST00000562626 ZACNQ401N2 412 aa10.56□□□□□ -0.72
CLK3-208ENST00000562626 INTS8Q75QN2 995 aaKnown RBP10.56□□□□□ -0.72
CLK3-208ENST00000562626 SV2AQ7L0J3 742 aa10.56□□□□□ -0.72
CLK3-208ENST00000562626 TRIM59Q8IWR1 403 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms