RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 GJA8P48165 433 aa14.12□□□□□ -0.15
CLK3-206ENST00000562078 ACVR2BQ13705 512 aa14.12□□□□□ -0.15
CLK3-206ENST00000562078 KPNB1Q14974 876 aaKnown RBP14.12□□□□□ -0.15
CLK3-206ENST00000562078 SUPT20HL1Q3ZLR7 823 aa14.12□□□□□ -0.15
CLK3-206ENST00000562078 ARSHQ5FYA8 562 aa14.12□□□□□ -0.15
CLK3-206ENST00000562078 HERC4Q5GLZ8 1057 aaPredicted RBP14.12□□□□□ -0.15
CLK3-206ENST00000562078 SLC30A10Q6XR72 485 aa14.12□□□□□ -0.15
CLK3-206ENST00000562078 PEX26Q7Z412 305 aa14.12□□□□□ -0.15
CLK3-206ENST00000562078 NELFCDQ8IXH7 590 aa14.12□□□□□ -0.15
CLK3-206ENST00000562078 RIBC1Q8N443 379 aaPredicted RBP14.12□□□□□ -0.15
CLK3-206ENST00000562078 SH3TC2Q8TF17 1288 aa14.12□□□□□ -0.15
CLK3-206ENST00000562078 DAAM1Q9Y4D1 1078 aa14.12□□□□□ -0.15
CLK3-206ENST00000562078 RIPK2O43353 540 aa14.11□□□□□ -0.15
CLK3-206ENST00000562078 FGFR1OPO95684 399 aaKnown RBP14.11□□□□□ -0.15
CLK3-206ENST00000562078 POLR2MP0CAP2 368 aa14.11□□□□□ -0.15
CLK3-206ENST00000562078 MARK3P27448 753 aa14.11□□□□□ -0.15
CLK3-206ENST00000562078 BTG3Q14201 252 aaPredicted RBP14.11□□□□□ -0.15
CLK3-206ENST00000562078 ZCWPW2Q504Y3 356 aa14.11□□□□□ -0.15
CLK3-206ENST00000562078 SPATA24Q86W54 205 aa14.11□□□□□ -0.15
CLK3-206ENST00000562078 STKLD1Q8NE28 680 aa14.11□□□□□ -0.15
CLK3-206ENST00000562078 CENPKQ9BS16 269 aa14.11□□□□□ -0.15
CLK3-206ENST00000562078 WDR18Q9BV38 432 aa14.11□□□□□ -0.15
CLK3-206ENST00000562078 PITPNM3Q9BZ71 974 aa14.11□□□□□ -0.15
CLK3-206ENST00000562078 ERVK-5Q9HDB9 667 aa14.11□□□□□ -0.15
CLK3-206ENST00000562078 KRT82Q9NSB4 513 aa14.11□□□□□ -0.15
CLK3-206ENST00000562078 COL11A1P12107 1806 aaPredicted RBP14.11□□□□□ -0.15
CLK3-206ENST00000562078 GLTPD2A6NH11 291 aa14.1□□□□□ -0.15
CLK3-206ENST00000562078 ADM5C9JUS6 153 aa14.1□□□□□ -0.15
CLK3-206ENST00000562078 STX2P32856 288 aa14.1□□□□□ -0.15
CLK3-206ENST00000562078 EPHX2P34913 555 aa14.1□□□□□ -0.15
CLK3-206ENST00000562078 SLC34A1Q06495 639 aa14.1□□□□□ -0.15
CLK3-206ENST00000562078 KLHL30Q0D2K2 578 aa14.1□□□□□ -0.15
CLK3-206ENST00000562078 ACSBG2Q5FVE4 666 aa14.1□□□□□ -0.15
CLK3-206ENST00000562078 HS2ST1Q7LGA3 356 aa14.1□□□□□ -0.15
CLK3-206ENST00000562078 NAT14Q8WUY8 206 aa14.1□□□□□ -0.15
CLK3-206ENST00000562078 ZNF184Q99676 751 aaPredicted RBP14.1□□□□□ -0.15
CLK3-206ENST00000562078 MIPEPQ99797 713 aa14.1□□□□□ -0.15
CLK3-206ENST00000562078 GINM1Q9NU53 330 aa14.1□□□□□ -0.15
CLK3-206ENST00000562078 AIPL1Q9NZN9 384 aa14.1□□□□□ -0.15
CLK3-206ENST00000562078 CIDEBQ9UHD4 219 aa14.1□□□□□ -0.15
CLK3-206ENST00000562078 PCDHA2Q9Y5H9 948 aa14.1□□□□□ -0.15
CLK3-206ENST00000562078 SCN4AP35499 1836 aa14.1□□□□□ -0.15
CLK3-206ENST00000562078 SSC5DA1L4H1 1573 aa14.1□□□□□ -0.15
CLK3-206ENST00000562078 EML1O00423 815 aa14.1□□□□□ -0.15
CLK3-206ENST00000562078 PAX3P23760 479 aa14.1□□□□□ -0.15
CLK3-206ENST00000562078 HOXA7P31268 230 aaPredicted RBP14.1□□□□□ -0.15
CLK3-206ENST00000562078 FOXN2P32314 431 aa14.1□□□□□ -0.15
CLK3-206ENST00000562078 CDK7P50613 346 aa14.1□□□□□ -0.15
CLK3-206ENST00000562078 HPCAP84074 193 aa14.1□□□□□ -0.15
CLK3-206ENST00000562078 PRPF4BQ13523 1007 aaKnown RBP14.1□□□□□ -0.15
CLK3-206ENST00000562078 SH2D4BQ5SQS7 431 aa14.1□□□□□ -0.15
CLK3-206ENST00000562078 FAM160B2Q86V87 743 aa14.1□□□□□ -0.15
CLK3-206ENST00000562078 SCYL3Q8IZE3 742 aa14.1□□□□□ -0.15
CLK3-206ENST00000562078 SMYD1Q8NB12 490 aa14.1□□□□□ -0.15
CLK3-206ENST00000562078 TPCN2Q8NHX9 752 aa14.1□□□□□ -0.15
CLK3-206ENST00000562078 NMD3Q96D46 503 aaKnown RBP14.1□□□□□ -0.15
CLK3-206ENST00000562078 MPP4Q96JB8 637 aa14.1□□□□□ -0.15
CLK3-206ENST00000562078 LSM14BQ9BX40 385 aaKnown RBP14.1□□□□□ -0.15
CLK3-206ENST00000562078 CEP72Q9P209 647 aa14.1□□□□□ -0.15
CLK3-206ENST00000562078 PAIP2BQ9ULR5 123 aaKnown RBP14.1□□□□□ -0.15
CLK3-206ENST00000562078 DNM3Q9UQ16 869 aa14.1□□□□□ -0.15
CLK3-206ENST00000562078 TRAF5O00463 557 aa14.09□□□□□ -0.15
CLK3-206ENST00000562078 KIAA0391O15091 583 aaKnown RBP14.09□□□□□ -0.15
CLK3-206ENST00000562078 MAGEB3O15480 346 aa14.09□□□□□ -0.15
CLK3-206ENST00000562078 MAP3K7O43318 606 aa14.09□□□□□ -0.15
CLK3-206ENST00000562078 CHMP2AO43633 222 aa14.09□□□□□ -0.15
CLK3-206ENST00000562078 AP1B1Q10567 949 aa14.09□□□□□ -0.15
CLK3-206ENST00000562078 EAPPQ56P03 285 aaPredicted RBP14.09□□□□□ -0.15
CLK3-206ENST00000562078 MFSD5Q6N075 450 aa14.09□□□□□ -0.15
CLK3-206ENST00000562078 DLK2Q6UY11 383 aa14.09□□□□□ -0.15
CLK3-206ENST00000562078 USP50Q70EL3 339 aaPredicted RBP14.09□□□□□ -0.15
CLK3-206ENST00000562078 LDHDQ86WU2 507 aa14.09□□□□□ -0.15
CLK3-206ENST00000562078 CYP4X1Q8N118 509 aa14.09□□□□□ -0.15
CLK3-206ENST00000562078 WDR60Q8WVS4 1066 aa14.09□□□□□ -0.15
CLK3-206ENST00000562078 LZICQ8WZA0 190 aa14.09□□□□□ -0.15
CLK3-206ENST00000562078 CORO1BQ9BR76 489 aa14.09□□□□□ -0.15
CLK3-206ENST00000562078 REEP2Q9BRK0 252 aa14.09□□□□□ -0.15
CLK3-206ENST00000562078 TMEM109Q9BVC6 243 aa14.09□□□□□ -0.15
CLK3-206ENST00000562078 ASCC2Q9H1I8 757 aaPredicted RBP14.09□□□□□ -0.15
CLK3-206ENST00000562078 PCDH18Q9HCL0 1135 aa14.09□□□□□ -0.15
CLK3-206ENST00000562078 GRHL1Q9NZI5 618 aa14.09□□□□□ -0.15
CLK3-206ENST00000562078 SPATA7Q9P0W8 599 aa14.09□□□□□ -0.15
CLK3-206ENST00000562078 FEM1BQ9UK73 627 aa14.09□□□□□ -0.15
CLK3-206ENST00000562078 BARX2Q9UMQ3 279 aaPredicted RBP14.09□□□□□ -0.15
CLK3-206ENST00000562078 WDR37Q9Y2I8 494 aa14.09□□□□□ -0.15
CLK3-206ENST00000562078 MRPL11Q9Y3B7 192 aaKnown RBP14.09□□□□□ -0.15
CLK3-206ENST00000562078 ABCB11O95342 1321 aa14.09□□□□□ -0.15
CLK3-206ENST00000562078 PASKQ96RG2 1323 aa14.09□□□□□ -0.15
CLK3-206ENST00000562078 EYA4O95677 639 aa14.09□□□□□ -0.15
CLK3-206ENST00000562078 VAV1P15498 845 aa14.09□□□□□ -0.15
CLK3-206ENST00000562078 TAC1P20366 129 aa14.09□□□□□ -0.15
CLK3-206ENST00000562078 SERPINB3P29508 390 aa14.09□□□□□ -0.15
CLK3-206ENST00000562078 PTENP60484 403 aa14.09□□□□□ -0.15
CLK3-206ENST00000562078 TMED1Q13445 227 aa14.09□□□□□ -0.15
CLK3-206ENST00000562078 NCCRP1Q6ZVX7 275 aaPredicted RBP14.09□□□□□ -0.15
CLK3-206ENST00000562078 JAMLQ86YT9 394 aa14.09□□□□□ -0.15
CLK3-206ENST00000562078 KSR1Q8IVT5 923 aa14.09□□□□□ -0.15
CLK3-206ENST00000562078 PPFIBP2Q8ND30 876 aa14.09□□□□□ -0.15
CLK3-206ENST00000562078 SCFD1Q8WVM8 642 aa14.09□□□□□ -0.15
CLK3-206ENST00000562078 EIF2AK1Q9BQI3 630 aaKnown RBP14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms